Wall clock time and date at job start Tue Mar 31 2020 21:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09009 * 109.99279 * 2 1 4 4 O 1.44048 * 109.92805 * 238.75771 * 2 1 3 5 5 C 1.44373 * 106.98446 * 214.02272 * 4 2 1 6 6 C 1.54992 * 103.49235 * 40.13408 * 5 4 2 7 7 C 1.54096 * 109.88539 * 121.08866 * 2 1 3 8 8 H 1.09001 * 110.49096 * 240.26474 * 7 2 1 9 9 C 1.50702 * 110.48594 * 2.77710 * 7 2 1 10 10 O 1.21278 * 120.00027 * 89.55437 * 9 7 2 11 11 N 1.34781 * 119.99879 * 269.28288 * 9 7 2 12 12 C 1.46925 * 120.62955 * 355.64931 * 11 9 7 13 13 C 1.53620 * 108.54503 * 126.37473 * 12 11 9 14 14 C 1.53034 * 109.24528 * 54.84888 * 13 12 11 15 15 N 1.46502 * 109.46050 * 178.49346 * 14 13 12 16 16 C 1.36940 * 119.99851 * 60.07289 * 15 14 13 17 17 H 1.07995 * 119.99808 * 320.22255 * 16 15 14 18 18 C 1.38816 * 119.99782 * 140.22905 * 16 15 14 19 19 N 1.31612 * 119.99750 * 158.07913 * 18 16 15 20 20 Si 1.86801 * 120.00134 * 338.07047 * 18 16 15 21 21 H 1.48503 * 109.46785 * 93.93988 * 20 18 16 22 22 H 1.48496 * 109.47165 * 213.94243 * 20 18 16 23 23 H 1.48497 * 109.47198 * 333.94699 * 20 18 16 24 24 C 1.46500 * 119.99989 * 240.06990 * 15 14 13 25 25 C 1.52999 * 109.47151 * 84.70956 * 24 15 14 26 26 C 1.53001 * 117.49808 * 243.62009 * 25 24 15 27 27 C 1.53001 * 60.00020 * 252.50831 * 26 25 24 28 28 C 1.53039 * 109.54134 * 298.51468 * 14 13 12 29 29 C 1.46924 * 120.63078 * 175.92851 * 11 9 7 30 30 H 1.09005 * 109.46811 * 299.41418 * 1 2 3 31 31 H 1.08995 * 109.47648 * 59.41381 * 1 2 3 32 32 H 1.09000 * 109.47015 * 179.42463 * 1 2 3 33 33 H 1.09002 * 110.61631 * 281.63348 * 5 4 2 34 34 H 1.08998 * 110.75889 * 158.70181 * 5 4 2 35 35 H 1.08999 * 110.90892 * 204.78277 * 6 5 4 36 36 H 1.08997 * 110.91128 * 81.17899 * 6 5 4 37 37 H 1.09005 * 109.58113 * 246.20128 * 12 11 9 38 38 H 1.08995 * 109.59286 * 6.62447 * 12 11 9 39 39 H 1.09000 * 109.62932 * 294.86201 * 13 12 11 40 40 H 1.09004 * 109.46208 * 174.74169 * 13 12 11 41 41 H 1.08998 * 109.44757 * 58.53205 * 14 13 12 42 42 H 0.96996 * 120.00040 * 179.97438 * 19 18 16 43 43 H 1.09003 * 109.47107 * 204.70889 * 24 15 14 44 44 H 1.09000 * 109.47197 * 324.70628 * 24 15 14 45 45 H 1.08997 * 115.54787 * 29.32987 * 25 24 15 46 46 H 1.08993 * 117.49960 * 0.02562 * 26 25 24 47 47 H 1.09000 * 117.49472 * 145.01556 * 26 25 24 48 48 H 1.08996 * 117.50016 * 252.50861 * 27 26 25 49 49 H 1.09002 * 117.49264 * 107.48714 * 27 26 25 50 50 H 1.08993 * 109.49873 * 301.41592 * 28 14 13 51 51 H 1.09004 * 109.52656 * 181.32573 * 28 14 13 52 52 H 1.08998 * 109.58500 * 353.37534 * 29 11 9 53 53 H 1.09003 * 109.58552 * 113.79309 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0244 0.0000 4 8 2.0209 -0.7024 -1.1578 5 6 3.2405 -1.3662 -0.7626 6 6 2.9217 -1.8914 0.6603 7 6 2.0541 -0.7483 1.2410 8 1 2.6601 -0.0853 1.8585 9 6 0.9075 -1.3106 2.0411 10 8 0.4887 -2.4232 1.8012 11 7 0.3511 -0.5792 3.0270 12 6 0.9112 0.7278 3.3968 13 6 -0.2125 1.7739 3.3430 14 6 -1.3726 1.3141 4.2289 15 7 -2.4322 2.3256 4.2093 16 6 -3.0343 2.6637 3.0268 17 1 -2.4441 2.7540 2.1269 18 6 -4.4031 2.8905 2.9849 19 7 -4.9212 3.6116 2.0134 20 14 -5.5099 2.1721 4.3071 21 1 -5.7119 3.1759 5.3826 22 1 -6.8223 1.8125 3.7126 23 1 -4.8751 0.9567 4.8774 24 6 -2.8478 2.9753 5.4549 25 6 -1.9197 4.1557 5.7487 26 6 -1.0659 4.0846 7.0163 27 6 -2.2596 5.0394 6.9506 28 6 -1.9244 -0.0125 3.7021 29 6 -0.8234 -1.0764 3.7564 30 1 -0.3633 0.5047 0.8953 31 1 -0.3634 0.5229 -0.8846 32 1 -0.3633 -1.0276 -0.0103 33 1 4.0702 -0.6598 -0.7341 34 1 3.4656 -2.1936 -1.4356 35 1 3.8350 -2.0200 1.2412 36 1 2.3574 -2.8228 0.6139 37 1 1.3195 0.6779 4.4063 38 1 1.6994 0.9996 2.6948 39 1 -0.5608 1.8846 2.3160 40 1 0.1644 2.7307 3.7044 41 1 -1.0177 1.1798 5.2507 42 1 -5.8777 3.7698 1.9838 43 1 -3.8718 3.3347 5.3532 44 1 -2.7942 2.2583 6.2741 45 1 -1.4845 4.6403 4.8748 46 1 -1.1650 3.1967 7.6407 47 1 -0.0684 4.5223 6.9764 48 1 -2.0474 6.1053 6.8675 49 1 -3.1443 4.7798 7.5320 50 1 -2.2564 0.1150 2.6718 51 1 -2.7657 -0.3279 4.3192 52 1 -1.1801 -1.9955 3.2915 53 1 -0.5536 -1.2705 4.7945 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670989416.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:20 Heat of formation + Delta-G solvation = -45.988710 kcal Electronic energy + Delta-G solvation = -31740.999849 eV Core-core repulsion = 27806.499422 eV Total energy + Delta-G solvation = -3934.500427 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -41.92893 -39.99986 -39.07624 -37.97226 -36.25980 -34.13618 -33.59677 -32.45509 -32.01855 -31.80834 -28.02282 -27.55601 -26.50284 -24.40286 -24.03672 -23.13105 -23.10688 -22.63164 -21.52345 -21.02266 -19.71061 -18.59921 -18.34270 -17.47550 -17.16644 -16.86540 -16.67298 -16.59956 -16.10366 -15.80553 -15.65123 -15.34957 -15.07650 -14.87660 -14.57221 -14.44967 -14.21830 -13.91277 -13.63068 -13.52349 -13.40169 -13.37090 -13.16037 -12.95733 -12.70479 -12.53941 -12.38377 -12.23076 -12.19401 -12.14738 -12.03026 -11.99234 -11.94213 -11.78354 -11.46398 -11.31192 -11.00617 -10.89139 -10.67385 -10.54667 -10.42708 -9.59678 -8.64038 -8.14930 -5.52648 1.28930 1.40410 1.48660 1.55017 2.01428 2.44300 2.84909 2.97142 3.17609 3.32608 3.35915 3.52738 3.76539 3.89389 4.03007 4.06388 4.14600 4.17966 4.21548 4.24628 4.25669 4.27777 4.33654 4.40175 4.46857 4.53118 4.56811 4.58125 4.67112 4.78008 4.81178 4.84639 4.84908 4.87663 4.92792 4.93058 4.95763 5.01399 5.07608 5.12995 5.16897 5.17731 5.22340 5.35825 5.46575 5.51231 5.62446 5.67546 5.91181 6.02946 6.28359 6.44464 7.08992 7.16269 7.72182 8.14210 9.05081 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014211 B = 0.003664 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.798221 B = 7640.391814 C = 8284.065803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.095 3.905 3 H 0.101 0.899 4 O -0.400 6.400 5 C 0.044 3.956 6 C -0.139 4.139 7 C -0.142 4.142 8 H 0.142 0.858 9 C 0.527 3.473 10 O -0.585 6.585 11 N -0.605 5.605 12 C 0.110 3.890 13 C -0.132 4.132 14 C 0.179 3.821 15 N -0.606 5.606 16 C -0.228 4.228 17 H 0.044 0.956 18 C -0.018 4.018 19 N -0.951 5.951 20 Si 0.927 3.073 21 H -0.278 1.278 22 H -0.319 1.319 23 H -0.256 1.256 24 C 0.162 3.838 25 C -0.171 4.171 26 C -0.155 4.155 27 C -0.191 4.191 28 C -0.133 4.133 29 C 0.123 3.877 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.040 0.960 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.114 0.886 36 H 0.067 0.933 37 H 0.100 0.900 38 H 0.106 0.894 39 H 0.041 0.959 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.258 0.742 43 H 0.032 0.968 44 H 0.057 0.943 45 H 0.083 0.917 46 H 0.101 0.899 47 H 0.104 0.896 48 H 0.096 0.904 49 H 0.088 0.912 50 H 0.036 0.964 51 H 0.056 0.944 52 H 0.067 0.933 53 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.888 -5.413 6.839 21.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.038 3.962 3 H 0.119 0.881 4 O -0.320 6.320 5 C -0.031 4.031 6 C -0.177 4.177 7 C -0.163 4.163 8 H 0.160 0.840 9 C 0.317 3.683 10 O -0.465 6.465 11 N -0.337 5.337 12 C -0.012 4.012 13 C -0.172 4.172 14 C 0.073 3.927 15 N -0.327 5.327 16 C -0.359 4.359 17 H 0.062 0.938 18 C -0.214 4.214 19 N -0.596 5.596 20 Si 0.757 3.243 21 H -0.205 1.205 22 H -0.248 1.248 23 H -0.180 1.180 24 C 0.037 3.963 25 C -0.192 4.192 26 C -0.192 4.192 27 C -0.229 4.229 28 C -0.173 4.173 29 C -0.001 4.001 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.108 0.892 34 H 0.121 0.879 35 H 0.133 0.867 36 H 0.086 0.914 37 H 0.118 0.882 38 H 0.124 0.876 39 H 0.060 0.940 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.067 0.933 43 H 0.050 0.950 44 H 0.075 0.925 45 H 0.102 0.898 46 H 0.119 0.881 47 H 0.122 0.878 48 H 0.114 0.886 49 H 0.106 0.894 50 H 0.055 0.945 51 H 0.074 0.926 52 H 0.085 0.915 53 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 19.423 -5.943 6.471 21.318 hybrid contribution -1.830 -0.004 0.062 1.831 sum 17.592 -5.947 6.533 19.686 Atomic orbital electron populations 1.22104 0.95458 1.01555 1.02938 1.22656 0.93798 0.96275 0.83512 0.88099 1.88946 1.41306 1.68201 1.33534 1.23779 0.87144 0.97250 0.94973 1.23161 1.00247 0.97437 0.96859 1.22963 0.95919 1.00102 0.97366 0.84021 1.20602 0.84064 0.84539 0.79121 1.90644 1.65147 1.21757 1.68981 1.48232 1.30044 1.20373 1.35012 1.22156 0.95796 0.80143 1.03127 1.22293 0.95742 0.98734 1.00435 1.20519 0.87957 0.86320 0.97894 1.44269 1.42409 1.42681 1.03331 1.18439 0.89223 1.39809 0.88401 0.93836 1.26027 0.98426 0.98827 0.98072 1.69984 1.12278 1.40381 1.36953 0.86100 0.77986 0.80300 0.79890 1.20542 1.24842 1.18027 1.20832 0.95325 0.92285 0.87812 1.22926 1.03477 1.00582 0.92203 1.23016 0.95469 1.01373 0.99297 1.22969 1.00255 0.97439 1.02219 1.22233 0.97510 0.96581 1.00974 1.21521 0.84976 0.96486 0.97072 0.90825 0.92268 0.94070 0.89222 0.87909 0.86730 0.91437 0.88212 0.87582 0.93974 0.90343 0.90090 0.93336 0.95029 0.92488 0.89820 0.88112 0.87759 0.88597 0.89373 0.94549 0.92571 0.91451 0.89154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.15 8.41 71.98 0.61 -4.55 16 2 C 0.10 2.30 4.07 30.96 0.13 2.43 16 3 H 0.10 1.97 8.14 -2.38 -0.02 1.96 16 4 O -0.40 -10.50 11.20 -148.98 -1.67 -12.17 16 5 C 0.04 0.76 7.72 72.66 0.56 1.32 16 6 C -0.14 -2.52 6.65 31.89 0.21 -2.31 16 7 C -0.14 -2.88 2.61 -10.55 -0.03 -2.91 16 8 H 0.14 1.76 6.17 -2.39 -0.01 1.75 16 9 C 0.53 14.60 4.65 87.66 0.41 15.01 16 10 O -0.58 -21.08 14.51 -3.02 -0.04 -21.12 16 11 N -0.60 -15.31 2.38 -818.07 -1.94 -17.25 16 12 C 0.11 2.12 6.06 86.51 0.52 2.65 16 13 C -0.13 -3.71 5.22 30.81 0.16 -3.55 16 14 C 0.18 5.83 2.59 45.02 0.12 5.95 16 15 N -0.61 -25.23 1.97 -677.89 -1.34 -26.57 16 16 C -0.23 -12.01 8.65 84.03 0.73 -11.28 16 17 H 0.04 2.57 7.07 -2.91 -0.02 2.55 16 18 C -0.02 -1.00 5.26 84.86 0.45 -0.56 16 19 N -0.95 -58.95 13.97 21.65 0.30 -58.65 16 20 Si 0.93 45.63 25.19 68.60 1.73 47.36 16 21 H -0.28 -13.13 6.64 99.48 0.66 -12.47 16 22 H -0.32 -16.43 7.11 99.48 0.71 -15.72 16 23 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 24 C 0.16 6.25 4.54 86.38 0.39 6.64 16 25 C -0.17 -5.60 6.01 -10.79 -0.06 -5.67 16 26 C -0.15 -3.63 10.18 30.60 0.31 -3.32 16 27 C -0.19 -5.21 10.25 30.60 0.31 -4.89 16 28 C -0.13 -4.61 5.31 30.67 0.16 -4.44 16 29 C 0.12 3.45 6.42 86.36 0.55 4.00 16 30 H 0.07 2.44 5.31 -2.38 -0.01 2.43 16 31 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.04 1.49 7.01 -2.39 -0.02 1.48 16 33 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.10 1.53 8.14 -2.39 -0.02 1.52 16 35 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.07 1.66 6.86 -2.39 -0.02 1.64 16 37 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 38 H 0.11 1.51 5.44 -2.39 -0.01 1.50 16 39 H 0.04 1.48 5.59 -2.39 -0.01 1.46 16 40 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 41 H 0.08 2.23 7.86 -2.39 -0.02 2.21 16 42 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 43 H 0.03 1.42 3.78 -2.39 -0.01 1.41 16 44 H 0.06 1.93 7.77 -2.39 -0.02 1.91 16 45 H 0.08 3.12 8.14 -2.39 -0.02 3.10 16 46 H 0.10 2.10 8.03 -2.39 -0.02 2.08 16 47 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 48 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 49 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 50 H 0.04 1.54 7.71 -2.39 -0.02 1.52 16 51 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 52 H 0.07 2.17 7.03 -2.39 -0.02 2.15 16 53 H 0.09 2.04 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -72.88 394.44 3.41 -69.48 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: 0.84 Total: 24.42 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: 5.53 Total: -5.48 kcal Atomic # 7 Polarization: -99.49 SS G_CDS: -2.98 Total: -102.47 kcal Atomic # 8 Polarization: -31.59 SS G_CDS: -1.71 Total: -33.30 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 1.73 Total: 47.36 kcal Total: -72.88 3.41 -69.48 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670989416.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.488 kcal (2) G-P(sol) polarization free energy of solvation -72.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds