Wall clock time and date at job start Tue Mar 31 2020 21:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 110.67649 * 2 1 4 4 O 1.44381 * 110.62246 * 122.96902 * 2 1 3 5 5 C 1.43746 * 106.97585 * 158.55946 * 4 2 1 6 6 C 1.54098 * 107.29179 * 333.48608 * 5 4 2 7 7 C 1.54810 * 104.19101 * 2.03336 * 6 5 4 8 8 H 1.09002 * 110.90580 * 262.67690 * 7 6 5 9 9 C 1.50702 * 110.90729 * 139.11390 * 7 6 5 10 10 O 1.21282 * 119.99756 * 241.45159 * 9 7 6 11 11 N 1.34774 * 120.00343 * 61.44815 * 9 7 6 12 12 C 1.46921 * 120.62968 * 359.72501 * 11 9 7 13 13 C 1.53628 * 108.54542 * 126.36339 * 12 11 9 14 14 C 1.53045 * 109.23941 * 54.85805 * 13 12 11 15 15 N 1.46496 * 109.45994 * 178.49175 * 14 13 12 16 16 C 1.36942 * 120.00039 * 60.06476 * 15 14 13 17 17 H 1.07998 * 119.99957 * 15.95499 * 16 15 14 18 18 C 1.38811 * 120.00067 * 195.95699 * 16 15 14 19 19 N 1.31622 * 120.00030 * 21.40290 * 18 16 15 20 20 Si 1.86803 * 120.00195 * 201.39976 * 18 16 15 21 21 H 1.48500 * 109.46915 * 90.00303 * 20 18 16 22 22 H 1.48496 * 109.47114 * 210.00193 * 20 18 16 23 23 H 1.48498 * 109.47014 * 330.00209 * 20 18 16 24 24 C 1.46498 * 119.99940 * 240.06561 * 15 14 13 25 25 C 1.53007 * 109.46959 * 84.11422 * 24 15 14 26 26 C 1.53000 * 117.49496 * 243.61858 * 25 24 15 27 27 C 1.52998 * 117.49499 * 174.99990 * 25 24 15 28 28 C 1.53046 * 109.53401 * 298.50778 * 14 13 12 29 29 C 1.46921 * 120.62907 * 179.97438 * 11 9 7 30 30 H 1.09008 * 109.46751 * 298.48324 * 1 2 3 31 31 H 1.08997 * 109.47396 * 58.48052 * 1 2 3 32 32 H 1.08994 * 109.47353 * 178.48563 * 1 2 3 33 33 H 1.08998 * 109.87609 * 92.91220 * 5 4 2 34 34 H 1.09002 * 109.87804 * 213.91382 * 5 4 2 35 35 H 1.09006 * 110.48179 * 120.71034 * 6 5 4 36 36 H 1.08996 * 110.48880 * 243.35070 * 6 5 4 37 37 H 1.08995 * 109.58921 * 246.19980 * 12 11 9 38 38 H 1.09002 * 109.59073 * 6.62474 * 12 11 9 39 39 H 1.08999 * 109.63339 * 294.86645 * 13 12 11 40 40 H 1.09002 * 109.42956 * 174.72220 * 13 12 11 41 41 H 1.08990 * 109.46276 * 58.52997 * 14 13 12 42 42 H 0.96992 * 120.00462 * 179.97438 * 19 18 16 43 43 H 1.09002 * 109.47271 * 204.11340 * 24 15 14 44 44 H 1.08998 * 109.46898 * 324.11276 * 24 15 14 45 45 H 1.08991 * 115.55169 * 29.32905 * 25 24 15 46 46 H 1.09004 * 117.50057 * 0.02562 * 26 25 24 47 47 H 1.08999 * 117.49630 * 145.02233 * 26 25 24 48 48 H 1.09002 * 117.49964 * 214.97579 * 27 25 24 49 49 H 1.08996 * 117.50389 * 359.97438 * 27 25 24 50 50 H 1.08998 * 109.50227 * 301.41699 * 28 14 13 51 51 H 1.09001 * 109.52111 * 181.33127 * 28 14 13 52 52 H 1.09000 * 109.59290 * 353.37701 * 29 11 9 53 53 H 1.08996 * 109.58633 * 113.80426 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 8 2.0385 -0.7354 1.1337 5 6 3.3840 -1.1255 0.8116 6 6 3.4794 -1.2167 -0.7237 7 6 2.0757 -0.7892 -1.2172 8 1 1.4548 -1.6604 -1.4261 9 6 2.1795 0.0974 -2.4314 10 8 1.7553 1.2329 -2.3911 11 7 2.7437 -0.3714 -3.5620 12 6 3.2676 -1.7426 -3.6243 13 6 2.6325 -2.4541 -4.8287 14 6 2.8834 -1.6279 -6.0923 15 7 2.3109 -2.3199 -7.2496 16 6 0.9687 -2.5882 -7.2920 17 1 0.2947 -2.0789 -6.6191 18 6 0.4744 -3.5148 -8.1997 19 7 1.2745 -4.4256 -8.7120 20 14 -1.3265 -3.4692 -8.6940 21 1 -1.4922 -2.5903 -9.8795 22 1 -1.7830 -4.8422 -9.0280 23 1 -2.1357 -2.9388 -7.5675 24 6 3.1743 -2.7250 -8.3617 25 6 3.8241 -4.0720 -8.0383 26 6 5.3477 -4.1066 -7.9020 27 6 4.6751 -4.7256 -9.1289 28 6 2.2266 -0.2535 -5.9439 29 6 2.8515 0.4808 -4.7539 30 1 -0.3633 0.4901 0.9034 31 1 -0.3634 0.5372 -0.8760 32 1 -0.3634 -1.0272 -0.0272 33 1 4.0854 -0.3783 1.1829 34 1 3.6054 -2.0953 1.2572 35 1 4.2406 -0.5331 -1.0998 36 1 3.6974 -2.2390 -1.0323 37 1 4.3508 -1.7150 -3.7422 38 1 3.0112 -2.2738 -2.7076 39 1 1.5593 -2.5577 -4.6688 40 1 3.0806 -3.4410 -4.9445 41 1 3.9564 -1.5037 -6.2379 42 1 0.9291 -5.0734 -9.3460 43 1 2.5781 -2.8179 -9.2694 44 1 3.9499 -1.9741 -8.5117 45 1 3.2454 -4.7295 -7.3897 46 1 5.8870 -3.1698 -8.0423 47 1 5.7715 -4.7870 -7.1634 48 1 4.6565 -5.8133 -9.1975 49 1 4.7717 -4.1964 -10.0769 50 1 1.1572 -0.3778 -5.7735 51 1 2.3852 0.3261 -6.8533 52 1 2.3205 1.4173 -4.5829 53 1 3.9014 0.6865 -4.9623 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670989417.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:25 Heat of formation + Delta-G solvation = -43.034508 kcal Electronic energy + Delta-G solvation = -31215.603555 eV Core-core repulsion = 27281.231232 eV Total energy + Delta-G solvation = -3934.372323 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -41.77318 -40.00279 -39.00038 -37.85324 -36.12532 -34.17593 -33.41405 -32.51779 -31.70601 -31.36704 -28.02008 -27.63885 -26.24080 -24.22151 -24.05404 -22.95879 -22.79486 -22.62342 -21.30230 -21.00950 -20.05509 -18.59206 -17.98014 -17.42784 -17.11107 -16.97340 -16.26915 -16.11695 -16.04399 -15.65574 -15.47278 -15.24843 -15.03398 -14.85854 -14.64691 -14.42696 -14.08693 -13.62332 -13.60338 -13.37584 -13.27069 -13.12510 -13.00170 -12.88262 -12.67848 -12.47577 -12.30880 -12.25480 -12.21201 -12.12645 -12.04704 -11.98120 -11.79367 -11.68425 -11.45278 -11.24728 -10.89391 -10.73186 -10.60380 -10.49865 -10.09912 -9.62920 -8.66183 -7.72539 -5.07583 1.44989 1.50518 1.53809 1.54546 1.97822 2.56272 2.79150 3.36045 3.38011 3.42084 3.56038 3.61633 3.63939 3.88699 4.08049 4.15254 4.18623 4.20506 4.27399 4.31309 4.37793 4.41039 4.46451 4.49645 4.57873 4.59873 4.69356 4.70727 4.79139 4.83210 4.87187 4.88186 4.89805 4.94688 4.96216 5.03107 5.06457 5.10166 5.16751 5.19788 5.21227 5.44452 5.46851 5.53665 5.59719 5.66420 5.74207 5.83959 5.89902 6.04225 6.41096 6.44134 7.10823 7.29256 8.03367 8.43002 9.28385 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013082 B = 0.003350 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.906760 B = 8355.596402 C = 9334.419708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.095 3.905 3 H 0.067 0.933 4 O -0.391 6.391 5 C 0.043 3.957 6 C -0.141 4.141 7 C -0.140 4.140 8 H 0.118 0.882 9 C 0.524 3.476 10 O -0.581 6.581 11 N -0.601 5.601 12 C 0.111 3.889 13 C -0.128 4.128 14 C 0.178 3.822 15 N -0.600 5.600 16 C -0.240 4.240 17 H 0.059 0.941 18 C -0.040 4.040 19 N -0.904 5.904 20 Si 0.936 3.064 21 H -0.295 1.295 22 H -0.300 1.300 23 H -0.282 1.282 24 C 0.212 3.788 25 C -0.097 4.097 26 C -0.189 4.189 27 C -0.186 4.186 28 C -0.130 4.130 29 C 0.121 3.879 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.107 0.893 35 H 0.084 0.916 36 H 0.112 0.888 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.038 0.962 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.242 0.758 43 H 0.042 0.958 44 H 0.026 0.974 45 H 0.073 0.927 46 H 0.094 0.906 47 H 0.089 0.911 48 H 0.075 0.925 49 H 0.080 0.920 50 H 0.036 0.964 51 H 0.066 0.934 52 H 0.074 0.926 53 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.685 4.454 14.098 17.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.037 3.963 3 H 0.085 0.915 4 O -0.310 6.310 5 C -0.033 4.033 6 C -0.179 4.179 7 C -0.161 4.161 8 H 0.136 0.864 9 C 0.313 3.687 10 O -0.462 6.462 11 N -0.333 5.333 12 C -0.011 4.011 13 C -0.168 4.168 14 C 0.071 3.929 15 N -0.320 5.320 16 C -0.371 4.371 17 H 0.076 0.924 18 C -0.236 4.236 19 N -0.550 5.550 20 Si 0.767 3.233 21 H -0.223 1.223 22 H -0.228 1.228 23 H -0.208 1.208 24 C 0.087 3.913 25 C -0.118 4.118 26 C -0.226 4.226 27 C -0.223 4.223 28 C -0.170 4.170 29 C -0.002 4.002 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.125 0.875 35 H 0.103 0.897 36 H 0.131 0.869 37 H 0.113 0.887 38 H 0.122 0.878 39 H 0.057 0.943 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.052 0.948 43 H 0.060 0.940 44 H 0.044 0.956 45 H 0.091 0.909 46 H 0.112 0.888 47 H 0.108 0.892 48 H 0.094 0.906 49 H 0.098 0.902 50 H 0.055 0.945 51 H 0.084 0.916 52 H 0.093 0.907 53 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.312 4.878 14.179 17.651 hybrid contribution -1.484 -0.355 -1.158 1.915 sum 7.828 4.523 13.021 15.852 Atomic orbital electron populations 1.21734 0.92581 1.03006 1.02711 1.22828 0.95790 0.94723 0.82941 0.91462 1.88874 1.29210 1.73868 1.39094 1.23343 0.83654 1.01962 0.94371 1.23104 0.94202 1.04660 0.95899 1.22919 1.00709 0.99451 0.93015 0.86397 1.20603 0.76318 0.87276 0.84510 1.90657 1.50076 1.21177 1.84288 1.48192 1.58543 1.14924 1.11641 1.22195 0.99291 0.80173 0.99468 1.22282 1.00063 0.99282 0.95219 1.20401 0.95840 0.90202 0.86412 1.44284 1.04268 1.66326 1.17101 1.19109 0.84132 1.16650 1.17184 0.92357 1.25200 0.99191 0.96681 1.02549 1.70307 1.34377 1.16740 1.33606 0.85748 0.83589 0.75880 0.78047 1.22319 1.22757 1.20810 1.20094 0.90453 0.90272 0.90526 1.22549 0.89280 0.99618 1.00329 1.23124 0.96881 1.02362 1.00275 1.22636 1.07064 0.98944 0.93691 1.22227 0.99654 0.97900 0.97245 1.21563 1.01686 0.93516 0.83424 0.91055 0.91782 0.91383 0.91463 0.87510 0.89701 0.86919 0.88734 0.87831 0.94307 0.91708 0.91178 0.94839 0.93969 0.95594 0.90916 0.88790 0.89243 0.90621 0.90188 0.94537 0.91566 0.90715 0.89385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 9.66 71.98 0.70 -2.48 16 2 C 0.09 2.17 3.03 31.28 0.09 2.26 16 3 H 0.07 1.72 7.53 -2.38 -0.02 1.71 16 4 O -0.39 -8.58 11.22 -148.98 -1.67 -10.25 16 5 C 0.04 0.64 7.70 72.35 0.56 1.20 16 6 C -0.14 -2.03 5.22 31.58 0.16 -1.86 16 7 C -0.14 -2.92 1.98 -10.24 -0.02 -2.94 16 8 H 0.12 2.38 7.74 -2.39 -0.02 2.36 16 9 C 0.52 14.14 6.99 87.66 0.61 14.75 16 10 O -0.58 -19.72 15.12 -3.04 -0.05 -19.77 16 11 N -0.60 -15.21 2.97 -818.16 -2.43 -17.63 16 12 C 0.11 2.37 5.70 86.51 0.49 2.86 16 13 C -0.13 -3.98 5.32 30.82 0.16 -3.81 16 14 C 0.18 6.12 2.59 45.02 0.12 6.23 16 15 N -0.60 -26.33 2.47 -677.88 -1.67 -28.00 16 16 C -0.24 -12.12 8.42 84.03 0.71 -11.42 16 17 H 0.06 3.03 6.91 -2.91 -0.02 3.01 16 18 C -0.04 -2.10 4.89 84.86 0.41 -1.68 16 19 N -0.90 -48.61 9.05 21.65 0.20 -48.42 16 20 Si 0.94 44.19 29.61 68.60 2.03 46.22 16 21 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 22 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 23 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 24 C 0.21 9.21 5.09 86.38 0.44 9.65 16 25 C -0.10 -3.94 4.45 -10.79 -0.05 -3.99 16 26 C -0.19 -5.96 10.18 30.59 0.31 -5.65 16 27 C -0.19 -6.65 10.25 30.59 0.31 -6.33 16 28 C -0.13 -4.27 5.30 30.66 0.16 -4.11 16 29 C 0.12 3.25 6.43 86.35 0.55 3.81 16 30 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.06 1.58 8.04 -2.39 -0.02 1.56 16 32 H 0.07 1.40 8.13 -2.39 -0.02 1.38 16 33 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.08 1.19 7.85 -2.38 -0.02 1.17 16 36 H 0.11 1.13 6.85 -2.39 -0.02 1.11 16 37 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.10 1.76 4.40 -2.39 -0.01 1.75 16 39 H 0.04 1.43 7.68 -2.39 -0.02 1.41 16 40 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.07 2.18 7.87 -2.39 -0.02 2.16 16 42 H 0.24 13.09 8.31 -92.71 -0.77 12.31 16 43 H 0.04 2.14 6.32 -2.39 -0.02 2.13 16 44 H 0.03 1.01 7.78 -2.39 -0.02 1.00 16 45 H 0.07 3.54 7.49 -2.39 -0.02 3.52 16 46 H 0.09 2.65 8.03 -2.39 -0.02 2.63 16 47 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 48 H 0.08 2.67 8.14 -2.39 -0.02 2.66 16 49 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 50 H 0.04 1.41 7.08 -2.39 -0.02 1.39 16 51 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 52 H 0.07 2.21 7.01 -2.39 -0.02 2.19 16 53 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -61.94 401.37 3.02 -58.92 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: 0.87 Total: 22.43 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: 5.73 Total: -3.51 kcal Atomic # 7 Polarization: -90.15 SS G_CDS: -3.91 Total: -94.05 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -1.72 Total: -30.02 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -61.94 3.02 -58.92 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670989417.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.888 kcal (2) G-P(sol) polarization free energy of solvation -61.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds