Wall clock time and date at job start Tue Mar 31 2020 21:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.86402 * 2 1 4 4 O 1.43738 * 109.87668 * 121.16176 * 2 1 3 5 5 C 1.44383 * 106.97085 * 145.93623 * 4 2 1 6 6 C 1.54986 * 103.49351 * 319.93861 * 5 4 2 7 7 C 1.54100 * 109.87513 * 238.99580 * 2 1 3 8 8 H 1.09001 * 110.48807 * 119.73988 * 7 2 1 9 9 C 1.50701 * 110.49277 * 357.21898 * 7 2 1 10 10 O 1.21281 * 120.00026 * 273.99694 * 9 7 2 11 11 N 1.34771 * 120.00075 * 93.99442 * 9 7 2 12 12 C 1.46998 * 120.61255 * 355.33633 * 11 9 7 13 13 C 1.53198 * 108.73891 * 126.38880 * 12 11 9 14 14 C 1.53037 * 109.33822 * 54.61932 * 13 12 11 15 15 N 1.46506 * 109.45934 * 178.59961 * 14 13 12 16 16 C 1.36930 * 119.99658 * 60.00342 * 15 14 13 17 17 H 1.07997 * 120.00752 * 20.47065 * 16 15 14 18 18 C 1.38816 * 119.99429 * 200.46889 * 16 15 14 19 19 N 1.31618 * 120.00353 * 4.39888 * 18 16 15 20 20 Si 1.86801 * 119.99800 * 184.39878 * 18 16 15 21 21 H 1.48495 * 109.47288 * 59.99681 * 20 18 16 22 22 H 1.48500 * 109.47377 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46922 * 299.99991 * 20 18 16 24 24 C 1.46502 * 119.99805 * 239.99836 * 15 14 13 25 25 C 1.53006 * 109.46869 * 84.86019 * 24 15 14 26 26 C 1.52996 * 117.50042 * 243.62140 * 25 24 15 27 27 C 1.52998 * 117.49814 * 174.99775 * 25 24 15 28 28 C 1.53038 * 109.54145 * 298.61973 * 14 13 12 29 29 C 1.46924 * 120.63524 * 175.31451 * 11 9 7 30 30 H 1.09005 * 109.47082 * 185.85549 * 1 2 3 31 31 H 1.08996 * 109.47192 * 305.85633 * 1 2 3 32 32 H 1.09002 * 109.47340 * 65.85932 * 1 2 3 33 33 H 1.09005 * 110.61747 * 78.44146 * 5 4 2 34 34 H 1.09005 * 110.61903 * 201.27329 * 5 4 2 35 35 H 1.09005 * 110.91053 * 278.82375 * 6 5 4 36 36 H 1.09008 * 110.91072 * 155.21886 * 6 5 4 37 37 H 1.08994 * 109.63209 * 6.59962 * 12 11 9 38 38 H 1.08997 * 109.58135 * 246.14808 * 12 11 9 39 39 H 1.09005 * 109.49516 * 294.65601 * 13 12 11 40 40 H 1.08998 * 109.50040 * 174.59219 * 13 12 11 41 41 H 1.09001 * 109.46113 * 58.63993 * 14 13 12 42 42 H 0.97000 * 120.00179 * 179.97438 * 19 18 16 43 43 H 1.08993 * 109.46972 * 204.85717 * 24 15 14 44 44 H 1.08995 * 109.47239 * 324.86388 * 24 15 14 45 45 H 1.09004 * 115.54527 * 29.32833 * 25 24 15 46 46 H 1.09000 * 117.50032 * 359.97438 * 26 25 24 47 47 H 1.09002 * 117.50170 * 145.02091 * 26 25 24 48 48 H 1.09004 * 117.49378 * 214.97846 * 27 25 24 49 49 H 1.08995 * 117.50099 * 359.97438 * 27 25 24 50 50 H 1.08999 * 109.49873 * 181.31038 * 28 14 13 51 51 H 1.08991 * 109.49896 * 301.38316 * 28 14 13 52 52 H 1.08999 * 109.58667 * 113.83714 * 29 11 9 53 53 H 1.09003 * 109.58435 * 353.41779 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 8 2.0188 -0.6995 1.1567 5 6 3.2379 -1.3652 0.7628 6 6 2.9195 -1.8905 -0.6602 7 6 2.0540 -0.7465 -1.2422 8 1 2.6600 -0.0827 -1.8588 9 6 0.9073 -1.3077 -2.0430 10 8 0.4463 -2.3939 -1.7629 11 7 0.3941 -0.6025 -3.0704 12 6 0.8729 0.7572 -3.3582 13 6 1.3044 0.8266 -4.8265 14 6 0.1482 0.3653 -5.7168 15 7 0.5466 0.4623 -7.1233 16 6 1.6219 -0.2512 -7.5811 17 1 1.9709 -1.1136 -7.0326 18 6 2.2635 0.1340 -8.7503 19 7 1.8941 1.2336 -9.3721 20 14 3.6512 -0.9084 -9.4410 21 1 3.1440 -2.2711 -9.7423 22 1 4.1661 -0.2847 -10.6865 23 1 4.7472 -0.9976 -8.4430 24 6 -0.2057 1.3227 -8.0400 25 6 0.3202 2.7561 -7.9412 26 6 -0.6434 3.8284 -7.4289 27 6 -0.2592 3.7894 -8.9093 28 6 -0.2048 -1.0866 -5.3859 29 6 -0.6539 -1.1782 -3.9242 30 1 -0.3633 -1.0224 0.1048 31 1 -0.3633 0.6019 0.8329 32 1 -0.3634 0.4203 -0.9378 33 1 4.0685 -0.6598 0.7346 34 1 3.4600 -2.1910 1.4387 35 1 2.3540 -2.8212 -0.6138 36 1 3.8332 -2.0207 -1.2403 37 1 1.7225 0.9898 -2.7164 38 1 0.0703 1.4727 -3.1791 39 1 2.1659 0.1775 -4.9836 40 1 1.5712 1.8528 -5.0793 41 1 -0.7208 0.9994 -5.5411 42 1 2.3426 1.5029 -10.1889 43 1 -0.0836 0.9605 -9.0607 44 1 -1.2619 1.3039 -7.7715 45 1 1.3718 2.8534 -7.6711 46 1 -1.6522 3.5128 -7.1626 47 1 -0.2260 4.6315 -6.8215 48 1 0.4111 4.5669 -9.2759 49 1 -1.0147 3.4480 -9.6169 50 1 -1.0127 -1.4218 -6.0363 51 1 0.6706 -1.7177 -5.5382 52 1 -1.5810 -0.6206 -3.7910 53 1 -0.8115 -2.2227 -3.6551 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670989418.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:29 Heat of formation + Delta-G solvation = -37.101499 kcal Electronic energy + Delta-G solvation = -31416.658594 eV Core-core repulsion = 27482.543546 eV Total energy + Delta-G solvation = -3934.115049 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.90947 -39.98475 -38.94200 -37.82396 -36.09027 -34.13867 -33.38717 -32.44908 -31.82965 -31.32119 -27.97859 -27.50491 -26.27572 -24.31820 -23.93580 -23.13360 -22.94368 -22.63491 -21.23624 -20.94312 -19.62453 -18.62583 -18.03038 -17.54413 -17.12382 -16.97100 -16.61119 -16.09750 -16.04008 -15.77922 -15.44074 -15.22579 -15.02297 -14.84169 -14.57216 -14.23972 -13.86373 -13.63022 -13.46242 -13.30222 -13.23246 -13.18354 -12.96756 -12.85244 -12.66822 -12.51297 -12.32828 -12.21731 -12.19877 -12.07958 -11.99876 -11.96951 -11.79936 -11.75590 -11.42863 -11.23900 -10.98670 -10.84774 -10.53146 -10.45599 -10.04062 -9.61135 -8.57821 -7.64792 -5.11878 1.47156 1.50281 1.53781 1.55228 2.00460 2.56335 2.85847 3.31713 3.38585 3.45694 3.53703 3.62783 3.78250 3.88305 4.09483 4.16986 4.19507 4.24534 4.28659 4.31428 4.35385 4.42810 4.47418 4.51364 4.54498 4.58876 4.63074 4.72903 4.80387 4.83987 4.88458 4.90259 4.91162 4.92315 4.97057 4.98015 5.08802 5.13756 5.18132 5.19435 5.22323 5.45654 5.48200 5.58842 5.61716 5.68378 5.76188 5.90788 5.93216 6.03744 6.43452 6.51248 7.15483 7.33298 8.05380 8.45377 9.32002 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013583 B = 0.003399 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.881632 B = 8234.799135 C = 9205.559274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.093 3.907 3 H 0.105 0.895 4 O -0.394 6.394 5 C 0.050 3.950 6 C -0.145 4.145 7 C -0.148 4.148 8 H 0.127 0.873 9 C 0.529 3.471 10 O -0.583 6.583 11 N -0.604 5.604 12 C 0.111 3.889 13 C -0.128 4.128 14 C 0.179 3.821 15 N -0.602 5.602 16 C -0.238 4.238 17 H 0.058 0.942 18 C -0.043 4.043 19 N -0.912 5.912 20 Si 0.946 3.054 21 H -0.290 1.290 22 H -0.298 1.298 23 H -0.286 1.286 24 C 0.212 3.788 25 C -0.089 4.089 26 C -0.194 4.194 27 C -0.184 4.184 28 C -0.130 4.130 29 C 0.122 3.878 30 H 0.042 0.958 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.104 0.896 35 H 0.068 0.932 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.093 0.907 39 H 0.042 0.958 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.241 0.759 43 H 0.056 0.944 44 H 0.016 0.984 45 H 0.067 0.933 46 H 0.092 0.908 47 H 0.088 0.912 48 H 0.074 0.926 49 H 0.079 0.921 50 H 0.063 0.937 51 H 0.037 0.963 52 H 0.085 0.915 53 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.481 2.964 16.215 16.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.035 3.965 3 H 0.123 0.877 4 O -0.313 6.313 5 C -0.026 4.026 6 C -0.183 4.183 7 C -0.169 4.169 8 H 0.145 0.855 9 C 0.319 3.681 10 O -0.463 6.463 11 N -0.336 5.336 12 C -0.012 4.012 13 C -0.168 4.168 14 C 0.072 3.928 15 N -0.323 5.323 16 C -0.369 4.369 17 H 0.076 0.924 18 C -0.238 4.238 19 N -0.559 5.559 20 Si 0.777 3.223 21 H -0.217 1.217 22 H -0.225 1.225 23 H -0.213 1.213 24 C 0.086 3.914 25 C -0.109 4.109 26 C -0.231 4.231 27 C -0.221 4.221 28 C -0.170 4.170 29 C -0.001 4.001 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.122 0.878 35 H 0.087 0.913 36 H 0.117 0.883 37 H 0.122 0.878 38 H 0.111 0.889 39 H 0.060 0.940 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.051 0.949 43 H 0.074 0.926 44 H 0.034 0.966 45 H 0.086 0.914 46 H 0.110 0.890 47 H 0.107 0.893 48 H 0.093 0.907 49 H 0.097 0.903 50 H 0.082 0.918 51 H 0.056 0.944 52 H 0.103 0.897 53 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.772 2.454 16.377 16.655 hybrid contribution 1.138 -0.762 -1.485 2.020 sum -0.634 1.692 14.892 15.001 Atomic orbital electron populations 1.22099 0.94069 1.02262 1.03404 1.22703 0.95164 0.96112 0.82552 0.87690 1.88868 1.40971 1.68088 1.33407 1.23703 0.87350 0.97194 0.94344 1.23161 1.00035 0.97813 0.97284 1.22984 0.95959 0.99976 0.98011 0.85542 1.20523 0.83616 0.84102 0.79902 1.90643 1.62905 1.23319 1.69468 1.48254 1.39047 1.16894 1.29379 1.22045 1.01105 0.81874 0.96138 1.22188 0.99252 1.01290 0.94035 1.20396 0.95438 0.93582 0.83425 1.44218 1.32447 1.51260 1.04326 1.19122 1.05692 1.05722 1.06330 0.92375 1.25410 1.00339 0.97813 1.00269 1.70266 1.43011 1.23521 1.19067 0.85677 0.80858 0.78373 0.77350 1.21710 1.22469 1.21269 1.20187 0.89042 0.87755 0.94401 1.22495 0.96079 0.91827 1.00525 1.23141 1.00598 1.03189 0.96169 1.22610 1.03635 1.03287 0.92603 1.22233 1.00470 0.99372 0.94891 1.21532 0.90276 0.99517 0.88758 0.93860 0.90450 0.90330 0.89577 0.87781 0.91292 0.88292 0.87776 0.88919 0.93962 0.91623 0.91460 0.94900 0.92583 0.96583 0.91428 0.88988 0.89344 0.90694 0.90260 0.91821 0.94390 0.89677 0.90964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.32 8.41 71.98 0.61 -2.71 16 2 C 0.09 1.77 4.05 30.97 0.13 1.90 16 3 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 4 O -0.39 -8.79 11.19 -148.98 -1.67 -10.46 16 5 C 0.05 0.84 7.72 72.66 0.56 1.40 16 6 C -0.14 -2.95 6.65 31.89 0.21 -2.74 16 7 C -0.15 -3.08 2.63 -10.55 -0.03 -3.10 16 8 H 0.13 2.10 6.15 -2.39 -0.01 2.09 16 9 C 0.53 14.58 4.63 87.66 0.41 14.99 16 10 O -0.58 -20.56 14.52 -3.03 -0.04 -20.60 16 11 N -0.60 -15.49 2.52 -818.73 -2.06 -17.56 16 12 C 0.11 2.38 5.79 86.35 0.50 2.88 16 13 C -0.13 -3.91 5.30 30.67 0.16 -3.75 16 14 C 0.18 6.17 2.59 45.02 0.12 6.29 16 15 N -0.60 -26.54 2.47 -677.89 -1.67 -28.22 16 16 C -0.24 -11.92 8.49 84.04 0.71 -11.21 16 17 H 0.06 2.97 6.80 -2.91 -0.02 2.95 16 18 C -0.04 -2.23 5.25 84.86 0.45 -1.79 16 19 N -0.91 -48.56 8.43 21.65 0.18 -48.37 16 20 Si 0.95 43.76 29.56 68.60 2.03 45.79 16 21 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 22 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 23 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 24 C 0.21 9.31 5.09 86.38 0.44 9.75 16 25 C -0.09 -3.63 4.37 -10.79 -0.05 -3.68 16 26 C -0.19 -6.25 10.18 30.59 0.31 -5.94 16 27 C -0.18 -6.68 10.25 30.59 0.31 -6.37 16 28 C -0.13 -4.30 5.31 30.67 0.16 -4.13 16 29 C 0.12 3.38 6.42 86.36 0.55 3.93 16 30 H 0.04 1.15 7.22 -2.38 -0.02 1.13 16 31 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.08 1.50 6.45 -2.39 -0.02 1.49 16 33 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 34 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 35 H 0.07 1.80 6.91 -2.38 -0.02 1.78 16 36 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16 37 H 0.10 1.72 5.40 -2.39 -0.01 1.71 16 38 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.04 1.52 7.71 -2.38 -0.02 1.50 16 40 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.07 2.15 7.86 -2.39 -0.02 2.13 16 42 H 0.24 12.97 8.31 -92.71 -0.77 12.20 16 43 H 0.06 2.89 6.14 -2.39 -0.01 2.88 16 44 H 0.02 0.65 7.76 -2.39 -0.02 0.63 16 45 H 0.07 3.28 7.61 -2.39 -0.02 3.27 16 46 H 0.09 2.69 8.03 -2.39 -0.02 2.67 16 47 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 48 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 49 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 50 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 51 H 0.04 1.46 7.04 -2.39 -0.02 1.45 16 52 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 53 H 0.07 2.21 7.03 -2.39 -0.02 2.19 16 Total: -1.00 -62.45 397.25 3.20 -59.25 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: 0.88 Total: 24.43 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: 5.55 Total: -4.27 kcal Atomic # 7 Polarization: -90.59 SS G_CDS: -3.55 Total: -94.15 kcal Atomic # 8 Polarization: -29.34 SS G_CDS: -1.71 Total: -31.05 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -62.45 3.20 -59.25 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670989418.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.149 kcal (2) G-P(sol) polarization free energy of solvation -62.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds