Wall clock time and date at job start Tue Mar 31 2020 20:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.52490 * 2 1 4 4 C 1.53043 * 109.49949 * 239.92491 * 2 1 3 5 5 C 1.53043 * 109.53538 * 301.41054 * 4 2 1 6 6 C 1.53620 * 109.24245 * 298.51211 * 5 4 2 7 7 N 1.46927 * 108.54661 * 54.85615 * 6 5 4 8 8 C 1.34777 * 120.63037 * 126.36447 * 7 6 5 9 9 O 1.21610 * 119.99833 * 199.43810 * 8 7 6 10 10 C 1.47103 * 119.99968 * 19.44622 * 8 7 6 11 11 C 1.32085 * 118.87133 * 196.08855 * 10 8 7 12 12 C 1.50272 * 122.57145 * 180.39190 * 11 10 8 13 13 O 1.42885 * 110.09710 * 344.35075 * 12 11 10 14 14 C 1.43281 * 113.09776 * 50.53032 * 13 12 11 15 15 C 1.50412 * 118.87654 * 16.10675 * 10 8 7 16 16 C 1.46927 * 118.73690 * 306.09748 * 7 6 5 17 17 H 1.09009 * 109.58524 * 293.93025 * 16 7 6 18 18 C 1.52995 * 109.58674 * 173.64714 * 16 7 6 19 19 C 1.53002 * 109.47223 * 176.20135 * 18 16 7 20 20 C 1.52999 * 109.47359 * 175.70656 * 19 18 16 21 21 N 1.46500 * 109.47094 * 180.02562 * 20 19 18 22 22 C 1.36935 * 119.99777 * 180.02562 * 21 20 19 23 23 H 1.07996 * 119.99928 * 359.97438 * 22 21 20 24 24 C 1.38817 * 119.99963 * 179.97438 * 22 21 20 25 25 N 1.31617 * 120.00089 * 179.97438 * 24 22 21 26 26 Si 1.86804 * 119.99726 * 0.02562 * 24 22 21 27 27 H 1.48496 * 109.47084 * 89.99998 * 26 24 22 28 28 H 1.48500 * 109.46922 * 209.99867 * 26 24 22 29 29 H 1.48497 * 109.47255 * 329.99694 * 26 24 22 30 30 H 1.08989 * 109.47081 * 299.91269 * 1 2 3 31 31 H 1.08997 * 109.46858 * 59.91833 * 1 2 3 32 32 H 1.09000 * 109.46475 * 179.91544 * 1 2 3 33 33 H 1.09002 * 109.46266 * 61.43060 * 4 2 1 34 34 H 1.08997 * 109.46148 * 181.39307 * 4 2 1 35 35 H 1.09008 * 109.49617 * 58.58630 * 5 4 2 36 36 H 1.09002 * 109.50034 * 178.65150 * 5 4 2 37 37 H 1.08996 * 109.74020 * 295.11715 * 6 5 4 38 38 H 1.09004 * 109.66647 * 174.55183 * 6 5 4 39 39 H 1.08000 * 118.71541 * 0.36859 * 11 10 8 40 40 H 1.08998 * 109.36270 * 224.15976 * 12 11 10 41 41 H 1.09006 * 109.26162 * 104.48300 * 12 11 10 42 42 H 1.08999 * 109.63305 * 171.47081 * 14 13 12 43 43 H 1.08997 * 109.80554 * 50.95478 * 14 13 12 44 44 H 1.08998 * 109.45610 * 43.29134 * 15 10 8 45 45 H 1.09000 * 109.45956 * 283.35307 * 15 10 8 46 46 H 1.08999 * 109.47150 * 296.19686 * 18 16 7 47 47 H 1.08996 * 109.47246 * 56.19696 * 18 16 7 48 48 H 1.09005 * 109.46979 * 295.70731 * 19 18 16 49 49 H 1.09002 * 109.47056 * 55.70115 * 19 18 16 50 50 H 1.09003 * 109.46639 * 299.99812 * 20 19 18 51 51 H 1.08996 * 109.47077 * 59.99708 * 20 19 18 52 52 H 0.96998 * 120.00263 * 359.97438 * 21 20 19 53 53 H 0.97001 * 119.99715 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0409 -0.7230 -1.2484 5 6 1.5031 -2.1557 -1.2661 6 6 2.0190 -2.9054 -0.0285 7 7 1.6517 -2.1382 1.1695 8 6 0.9749 -2.7222 2.1781 9 8 0.3732 -2.0376 2.9832 10 6 0.9641 -4.1877 2.3052 11 6 0.0576 -4.7540 3.0813 12 6 -0.0235 -6.2415 3.2780 13 8 0.7320 -6.9123 2.2676 14 6 2.0644 -6.4034 2.1311 15 6 1.9860 -4.9900 1.5473 16 6 2.0413 -0.7238 1.2495 17 1 3.1275 -0.6464 1.3005 18 6 1.4230 -0.0914 2.4978 19 6 1.9064 1.3543 2.6300 20 6 1.2060 2.0199 3.8162 21 7 1.6685 3.4043 3.9423 22 6 1.1768 4.2021 4.9407 23 1 0.4478 3.8109 5.6349 24 6 1.6154 5.5137 5.0606 25 7 1.1424 6.2807 6.0199 26 14 2.8758 6.1904 3.8593 27 1 2.1770 6.7924 2.6955 28 1 3.6962 7.2277 4.5348 29 1 3.7561 5.0893 3.3929 30 1 -0.3633 0.5124 0.8907 31 1 -0.3633 0.5151 -0.8892 32 1 -0.3632 -1.0277 -0.0015 33 1 1.6988 -0.1957 -2.1390 34 1 3.1306 -0.7443 -1.2354 35 1 0.4133 -2.1354 -1.2542 36 1 1.8477 -2.6626 -2.1675 37 1 3.1033 -3.0022 -0.0822 38 1 1.5637 -3.8948 0.0173 39 1 -0.6528 -4.1232 3.5948 40 1 -1.0651 -6.5575 3.2201 41 1 0.3777 -6.4970 4.2588 42 1 2.6349 -7.0458 1.4603 43 1 2.5489 -6.3704 3.1069 44 1 2.9603 -4.5084 1.6305 45 1 1.6978 -5.0464 0.4976 46 1 0.3365 -0.1046 2.4116 47 1 1.7244 -0.6573 3.3792 48 1 2.9842 1.3635 2.7925 49 1 1.6721 1.9007 1.7163 50 1 0.1282 2.0107 3.6536 51 1 1.4403 1.4735 4.7298 52 1 2.3235 3.7555 3.3190 53 1 1.4487 7.1973 6.1033 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689122188.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:29 Heat of formation + Delta-G solvation = -52.147490 kcal Electronic energy + Delta-G solvation = -30717.358131 eV Core-core repulsion = 26782.590639 eV Total energy + Delta-G solvation = -3934.767492 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -42.10706 -40.17299 -38.77939 -37.49889 -35.89821 -34.64796 -34.09624 -33.33973 -32.07369 -31.31154 -28.74566 -27.56995 -26.93938 -25.46722 -25.15658 -24.41439 -23.06873 -22.00093 -21.75835 -19.89110 -19.65609 -19.23409 -17.90581 -17.47168 -17.01754 -16.85580 -16.60577 -16.53188 -16.10087 -15.92415 -15.74283 -15.59228 -15.20824 -14.91683 -14.79678 -14.51306 -14.37146 -14.14078 -13.91539 -13.73763 -13.56321 -13.39055 -13.29739 -12.97788 -12.80069 -12.77103 -12.51942 -12.46750 -12.18461 -12.11681 -11.95667 -11.87656 -11.77798 -11.65345 -11.48927 -11.28269 -11.16937 -11.00319 -10.73505 -10.15511 -10.05458 -9.42299 -9.36629 -8.07313 -5.42465 0.30579 1.34302 1.39967 1.47566 1.97896 2.12799 2.45435 2.92037 3.22940 3.35835 3.59252 3.69638 3.75734 3.80133 3.84876 3.89570 4.09118 4.10951 4.18183 4.19870 4.27517 4.33544 4.45502 4.47930 4.53875 4.55526 4.59191 4.64065 4.67002 4.73342 4.76220 4.79252 4.84201 4.85954 4.94129 4.98196 5.06117 5.08813 5.14015 5.21161 5.23838 5.26988 5.29817 5.39469 5.43901 5.49110 5.59070 5.69216 5.78228 6.10578 6.16563 6.48990 7.02246 7.17144 7.76708 8.00336 9.14558 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015686 B = 0.002665 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.571366 B =10505.300267 C =11698.033463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.104 4.104 3 H 0.080 0.920 4 C -0.111 4.111 5 C -0.135 4.135 6 C 0.078 3.922 7 N -0.603 5.603 8 C 0.542 3.458 9 O -0.568 6.568 10 C -0.179 4.179 11 C -0.118 4.118 12 C 0.088 3.912 13 O -0.391 6.391 14 C 0.052 3.948 15 C -0.119 4.119 16 C 0.157 3.843 17 H 0.084 0.916 18 C -0.092 4.092 19 C -0.119 4.119 20 C 0.160 3.840 21 N -0.757 5.757 22 C -0.245 4.245 23 H 0.048 0.952 24 C -0.066 4.066 25 N -0.985 5.985 26 Si 0.965 3.035 27 H -0.274 1.274 28 H -0.291 1.291 29 H -0.249 1.249 30 H 0.035 0.965 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.057 0.943 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.122 0.878 39 H 0.115 0.885 40 H 0.127 0.873 41 H 0.086 0.914 42 H 0.126 0.874 43 H 0.057 0.943 44 H 0.099 0.901 45 H 0.119 0.881 46 H 0.067 0.933 47 H 0.051 0.949 48 H 0.066 0.934 49 H 0.072 0.928 50 H 0.012 0.988 51 H 0.010 0.990 52 H 0.368 0.632 53 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.483 -31.855 -20.441 38.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.123 4.123 3 H 0.099 0.901 4 C -0.148 4.148 5 C -0.173 4.173 6 C -0.043 4.043 7 N -0.335 5.335 8 C 0.333 3.667 9 O -0.449 6.449 10 C -0.182 4.182 11 C -0.138 4.138 12 C 0.011 3.989 13 O -0.310 6.310 14 C -0.024 4.024 15 C -0.155 4.155 16 C 0.054 3.946 17 H 0.102 0.898 18 C -0.130 4.130 19 C -0.158 4.158 20 C 0.034 3.966 21 N -0.403 5.403 22 C -0.376 4.376 23 H 0.066 0.934 24 C -0.258 4.258 25 N -0.635 5.635 26 Si 0.791 3.209 27 H -0.200 1.200 28 H -0.217 1.217 29 H -0.174 1.174 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.118 0.882 37 H 0.108 0.892 38 H 0.139 0.861 39 H 0.133 0.867 40 H 0.144 0.856 41 H 0.103 0.897 42 H 0.144 0.856 43 H 0.075 0.925 44 H 0.118 0.882 45 H 0.136 0.864 46 H 0.085 0.915 47 H 0.069 0.931 48 H 0.085 0.915 49 H 0.091 0.909 50 H 0.030 0.970 51 H 0.028 0.972 52 H 0.202 0.798 53 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.980 -31.616 -19.973 37.727 hybrid contribution 0.159 1.606 0.538 1.701 sum 5.139 -30.010 -19.435 36.121 Atomic orbital electron populations 1.21807 0.95788 1.01207 1.00965 1.21554 0.95921 0.99907 0.94946 0.90135 1.21543 1.01120 0.95752 0.96412 1.22065 1.00965 0.95903 0.98383 1.22999 1.01955 0.96768 0.82549 1.47941 1.56167 1.10798 1.18581 1.18983 0.78089 0.88866 0.80803 1.90870 1.43291 1.65108 1.45603 1.21092 1.01355 0.92216 1.03537 1.23848 0.96320 0.98964 0.94659 1.21687 0.98642 0.86238 0.92282 1.88118 1.26008 1.59132 1.57740 1.22926 0.83631 0.94169 1.01720 1.21711 0.98056 0.95311 1.00443 1.21260 0.98567 0.79923 0.94858 0.89768 1.21821 1.01341 0.93016 0.96853 1.21792 1.00095 0.96370 0.97507 1.20654 0.96029 0.83452 0.96507 1.42700 1.51528 1.10435 1.35664 1.19047 1.18880 0.93510 1.06170 0.93435 1.25644 1.02789 0.96551 1.00781 1.69908 1.49011 1.08236 1.36313 0.85269 0.79038 0.78225 0.78417 1.19954 1.21711 1.17359 0.94548 0.92138 0.93114 0.91065 0.90534 0.92471 0.88202 0.89180 0.86071 0.86673 0.85553 0.89657 0.85636 0.92451 0.88226 0.86417 0.91461 0.93070 0.91488 0.90910 0.97042 0.97230 0.79811 0.93113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 8.21 71.98 0.59 -2.59 16 2 C -0.10 -2.00 2.41 -10.71 -0.03 -2.02 16 3 H 0.08 1.63 6.75 -2.39 -0.02 1.61 16 4 C -0.11 -1.38 5.43 30.62 0.17 -1.22 16 5 C -0.14 -1.35 5.75 30.82 0.18 -1.17 16 6 C 0.08 0.79 4.77 86.51 0.41 1.20 16 7 N -0.60 -11.38 2.39 -798.44 -1.91 -13.29 16 8 C 0.54 13.09 7.15 86.57 0.62 13.71 16 9 O -0.57 -19.00 11.95 -4.06 -0.05 -19.05 16 10 C -0.18 -3.17 5.52 -18.59 -0.10 -3.28 16 11 C -0.12 -2.08 9.56 24.59 0.24 -1.85 16 12 C 0.09 1.06 7.04 71.10 0.50 1.57 16 13 O -0.39 -5.27 10.83 -148.98 -1.61 -6.88 16 14 C 0.05 0.45 6.88 72.02 0.50 0.95 16 15 C -0.12 -1.13 4.24 29.80 0.13 -1.01 16 16 C 0.16 3.43 2.67 44.97 0.12 3.55 16 17 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 18 C -0.09 -2.81 2.76 30.59 0.08 -2.73 16 19 C -0.12 -3.96 5.17 30.59 0.16 -3.80 16 20 C 0.16 7.14 6.26 86.38 0.54 7.68 16 21 N -0.76 -39.19 5.41 -343.45 -1.86 -41.05 16 22 C -0.25 -15.27 10.47 84.03 0.88 -14.39 16 23 H 0.05 3.27 8.06 -2.91 -0.02 3.25 16 24 C -0.07 -4.13 5.50 84.86 0.47 -3.67 16 25 N -0.98 -65.98 13.97 21.65 0.30 -65.67 16 26 Si 0.96 47.13 27.74 68.60 1.90 49.03 16 27 H -0.27 -12.88 7.11 99.48 0.71 -12.18 16 28 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 29 H -0.25 -10.92 6.52 99.48 0.65 -10.27 16 30 H 0.04 1.03 6.26 -2.39 -0.01 1.01 16 31 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.05 1.17 5.97 -2.39 -0.01 1.15 16 33 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.06 0.76 6.33 -2.38 -0.02 0.74 16 36 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.09 0.57 8.05 -2.39 -0.02 0.55 16 38 H 0.12 0.92 3.50 -2.38 -0.01 0.92 16 39 H 0.12 2.47 7.40 -2.91 -0.02 2.44 16 40 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 42 H 0.13 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.06 0.50 8.10 -2.39 -0.02 0.49 16 44 H 0.10 0.77 7.52 -2.39 -0.02 0.75 16 45 H 0.12 0.71 5.40 -2.39 -0.01 0.70 16 46 H 0.07 2.37 4.87 -2.39 -0.01 2.36 16 47 H 0.05 1.78 6.62 -2.39 -0.02 1.77 16 48 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 49 H 0.07 2.25 6.49 -2.39 -0.02 2.24 16 50 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 51 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 52 H 0.37 17.60 5.53 -92.71 -0.51 17.09 16 53 H 0.26 16.40 8.31 -92.71 -0.77 15.63 16 Total: -1.00 -81.38 387.53 2.56 -78.82 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: 0.34 Total: 27.18 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: 5.45 Total: -9.08 kcal Atomic # 7 Polarization: -116.54 SS G_CDS: -3.47 Total: -120.01 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -1.66 Total: -25.93 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 1.90 Total: 49.03 kcal Total: -81.38 2.56 -78.82 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689122188.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.668 kcal (2) G-P(sol) polarization free energy of solvation -81.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds