Wall clock time and date at job start Tue Mar 31 2020 19:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.20767 * 119.99751 * 2 1 4 4 C 1.50692 * 120.00388 * 180.02562 * 2 1 3 5 5 C 1.52999 * 109.47600 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.47573 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47165 * 180.02562 * 6 5 4 8 8 O 1.21281 * 119.99897 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99592 * 179.97438 * 7 6 5 10 10 C 1.47578 * 125.63228 * 359.69378 * 9 7 6 11 11 C 1.54365 * 104.65922 * 156.56788 * 10 9 7 12 12 C 1.54394 * 102.36741 * 36.42003 * 11 10 9 13 13 C 1.47088 * 125.62450 * 179.97438 * 9 7 6 14 14 H 1.08998 * 109.87677 * 300.41713 * 13 9 7 15 15 C 1.53006 * 109.87565 * 61.41753 * 13 9 7 16 16 C 1.52103 * 110.58517 * 154.16004 * 11 10 9 17 17 C 1.53346 * 109.44559 * 183.27557 * 16 11 10 18 18 N 1.46931 * 108.68692 * 306.70482 * 17 16 11 19 19 C 1.36934 * 120.55212 * 234.32248 * 18 17 16 20 20 H 1.08001 * 120.00261 * 27.98833 * 19 18 17 21 21 C 1.38811 * 120.00135 * 207.97909 * 19 18 17 22 22 N 1.31622 * 119.99640 * 17.48161 * 21 19 18 23 23 Si 1.86794 * 120.00345 * 197.47311 * 21 19 18 24 24 H 1.48504 * 109.47217 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47356 * 120.00578 * 23 21 19 26 26 H 1.48509 * 109.47138 * 240.00632 * 23 21 19 27 27 C 1.46941 * 118.89517 * 54.34578 * 18 17 16 28 28 C 1.52104 * 110.91087 * 278.52736 * 11 10 9 29 29 H 1.08997 * 109.47173 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47629 * 59.99678 * 1 2 3 31 31 H 1.09005 * 109.47397 * 299.99453 * 1 2 3 32 32 H 1.09005 * 109.46994 * 299.99826 * 4 2 1 33 33 H 1.09000 * 109.47552 * 59.99506 * 4 2 1 34 34 H 1.09005 * 109.46979 * 300.00048 * 5 4 2 35 35 H 1.09000 * 109.46898 * 59.99318 * 5 4 2 36 36 H 1.09005 * 109.47004 * 300.00029 * 6 5 4 37 37 H 1.08996 * 109.47242 * 59.99369 * 6 5 4 38 38 H 1.08998 * 110.37157 * 275.50182 * 10 9 7 39 39 H 1.08998 * 110.37323 * 37.84831 * 10 9 7 40 40 H 1.09003 * 110.72959 * 206.81371 * 12 11 10 41 41 H 1.08994 * 110.88902 * 83.57330 * 12 11 10 42 42 H 1.08997 * 109.46868 * 58.54646 * 15 13 9 43 43 H 1.08997 * 109.46444 * 178.54261 * 15 13 9 44 44 H 1.09004 * 109.46607 * 298.54433 * 15 13 9 45 45 H 1.09005 * 109.47802 * 303.26830 * 16 11 10 46 46 H 1.09003 * 109.47402 * 63.28221 * 16 11 10 47 47 H 1.09001 * 109.60318 * 186.94392 * 17 16 11 48 48 H 1.09002 * 109.73235 * 66.54182 * 17 16 11 49 49 H 0.97002 * 120.00094 * 180.02562 * 22 21 19 50 50 H 1.08998 * 109.60176 * 185.89310 * 27 18 17 51 51 H 1.08994 * 109.73307 * 65.48313 * 27 18 17 52 52 H 1.09000 * 109.47944 * 296.89279 * 28 11 10 53 53 H 1.08996 * 109.47625 * 56.91975 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0459 0.0000 4 6 2.2605 -1.3050 -0.0006 5 6 3.7648 -1.0254 -0.0011 6 6 4.5298 -2.3504 -0.0023 7 6 6.0114 -2.0749 -0.0022 8 8 6.4156 -0.9314 -0.0017 9 7 6.8872 -3.0993 -0.0027 10 6 6.5342 -4.5323 0.0031 11 6 7.7688 -5.2412 -0.5937 12 6 8.9363 -4.4035 -0.0287 13 6 8.3527 -2.9736 -0.0032 14 1 8.6773 -2.4247 -0.8871 15 6 8.8126 -2.2435 1.2604 16 6 7.8535 -6.6763 -0.0970 17 6 9.1305 -7.3296 -0.6391 18 7 9.1586 -7.1680 -2.0992 19 6 9.3047 -8.2563 -2.9174 20 1 8.9598 -9.2267 -2.5919 21 6 9.8957 -8.1124 -4.1651 22 7 10.6163 -7.0439 -4.4325 23 14 9.6687 -9.4351 -5.4644 24 1 8.8224 -10.5260 -4.9176 25 1 9.0099 -8.8479 -6.6587 26 1 10.9940 -9.9833 -5.8495 27 6 9.0280 -5.8190 -2.6669 28 6 7.7514 -5.1745 -2.1131 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 0.5138 0.8901 32 1 1.9972 -1.8770 0.8892 33 1 1.9972 -1.8763 -0.8908 34 1 4.0277 -0.4536 -0.8911 35 1 4.0284 -0.4540 0.8889 36 1 4.2669 -2.9226 0.8874 37 1 4.2661 -2.9214 -0.8925 38 1 6.3525 -4.8742 1.0220 39 1 5.6575 -4.7096 -0.6198 40 1 9.8025 -4.4548 -0.6884 41 1 9.1989 -4.7315 0.9769 42 1 8.4779 -2.7934 2.1399 43 1 9.9005 -2.1769 1.2657 44 1 8.3869 -1.2401 1.2753 45 1 7.8764 -6.6830 0.9928 46 1 6.9840 -7.2335 -0.4457 47 1 9.1334 -8.3904 -0.3885 48 1 10.0048 -6.8481 -0.2010 49 1 11.0291 -6.9431 -5.3046 50 1 8.9631 -5.8840 -3.7530 51 1 9.8924 -5.2168 -2.3875 52 1 6.8806 -5.7106 -2.4905 53 1 7.7030 -4.1330 -2.4307 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707127844.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:45 Heat of formation + Delta-G solvation = -89.452674 kcal Electronic energy + Delta-G solvation = -30260.116986 eV Core-core repulsion = 26323.731820 eV Total energy + Delta-G solvation = -3936.385166 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.71955 -40.48988 -39.76429 -37.51574 -35.30185 -34.77010 -32.95030 -32.54289 -31.58942 -31.47870 -28.94847 -28.39397 -27.14556 -25.74761 -24.24523 -23.74663 -22.58968 -22.05410 -20.52252 -19.84235 -19.58579 -18.41697 -17.93598 -17.32979 -16.98321 -16.80453 -16.53088 -16.09549 -15.79933 -15.67467 -15.46651 -15.19159 -15.08917 -14.70860 -14.60551 -14.37464 -14.08627 -14.01285 -13.47389 -13.31859 -13.26695 -13.14266 -13.05971 -12.97003 -12.88005 -12.70573 -12.66696 -12.57235 -12.38131 -12.21454 -12.15696 -12.01842 -11.77527 -11.71865 -11.70372 -11.38989 -11.07366 -11.01692 -10.79234 -10.49817 -10.47696 -9.60551 -8.61793 -7.84202 -5.28449 1.07988 1.46300 1.48872 1.58619 1.68386 2.02401 2.53331 3.19436 3.29246 3.46382 3.56052 3.74666 3.81887 3.89145 4.06417 4.09620 4.14111 4.19239 4.25944 4.30479 4.47584 4.51420 4.54480 4.57150 4.60824 4.65853 4.72576 4.76618 4.79029 4.80839 4.84019 4.86412 4.90460 4.96472 4.97937 5.06456 5.13005 5.17262 5.24005 5.25534 5.31264 5.34557 5.36905 5.43086 5.46975 5.48619 5.59675 5.69756 5.83511 6.42799 6.62287 6.66229 7.18784 7.22073 7.92393 8.42612 9.21475 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015163 B = 0.002465 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.207602 B =11356.725145 C =12300.822429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.348 3.652 3 O -0.518 6.518 4 C -0.167 4.167 5 C -0.094 4.094 6 C -0.126 4.126 7 C 0.515 3.485 8 O -0.592 6.592 9 N -0.611 5.611 10 C 0.113 3.887 11 C -0.055 4.055 12 C -0.111 4.111 13 C 0.135 3.865 14 H 0.043 0.957 15 C -0.150 4.150 16 C -0.103 4.103 17 C 0.139 3.861 18 N -0.608 5.608 19 C -0.253 4.253 20 H 0.069 0.931 21 C -0.055 4.055 22 N -0.937 5.937 23 Si 0.962 3.038 24 H -0.263 1.263 25 H -0.294 1.294 26 H -0.296 1.296 27 C 0.181 3.819 28 C -0.108 4.108 29 H 0.113 0.887 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.135 0.865 33 H 0.129 0.871 34 H 0.039 0.961 35 H 0.046 0.954 36 H 0.127 0.873 37 H 0.117 0.883 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.060 0.940 41 H 0.093 0.907 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.044 0.956 45 H 0.091 0.909 46 H 0.067 0.933 47 H 0.053 0.947 48 H 0.014 0.986 49 H 0.247 0.753 50 H 0.045 0.955 51 H -0.005 1.005 52 H 0.058 0.942 53 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.938 5.308 13.951 24.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.228 3.772 3 O -0.396 6.396 4 C -0.204 4.204 5 C -0.133 4.133 6 C -0.165 4.165 7 C 0.306 3.694 8 O -0.473 6.473 9 N -0.344 5.344 10 C -0.008 4.008 11 C -0.055 4.055 12 C -0.148 4.148 13 C 0.031 3.969 14 H 0.061 0.939 15 C -0.208 4.208 16 C -0.142 4.142 17 C 0.014 3.986 18 N -0.332 5.332 19 C -0.384 4.384 20 H 0.087 0.913 21 C -0.250 4.250 22 N -0.584 5.584 23 Si 0.791 3.209 24 H -0.187 1.187 25 H -0.221 1.221 26 H -0.224 1.224 27 C 0.055 3.945 28 C -0.147 4.147 29 H 0.132 0.868 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.152 0.848 33 H 0.147 0.853 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.145 0.855 37 H 0.135 0.865 38 H 0.117 0.883 39 H 0.113 0.887 40 H 0.079 0.921 41 H 0.112 0.888 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.063 0.937 45 H 0.110 0.890 46 H 0.085 0.915 47 H 0.072 0.928 48 H 0.032 0.968 49 H 0.056 0.944 50 H 0.063 0.937 51 H 0.013 0.987 52 H 0.076 0.924 53 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -19.397 6.516 13.828 24.696 hybrid contribution 0.954 -0.156 -1.420 1.718 sum -18.443 6.360 12.408 23.120 Atomic orbital electron populations 1.22296 0.91691 1.06776 1.04903 1.25415 0.93686 0.90188 0.67891 1.90451 1.73331 1.37350 1.38465 1.22267 0.93257 0.97211 1.07646 1.21054 0.94673 0.95804 1.01721 1.21716 0.88006 0.99795 1.06986 1.21178 0.89941 0.83277 0.74957 1.90681 1.81223 1.22962 1.52470 1.48775 1.06086 1.07326 1.72195 1.22586 0.97794 0.78024 1.02428 1.20951 0.94579 0.95565 0.94437 1.22683 0.97885 0.92073 1.02209 1.21501 0.80567 0.97019 0.97812 0.93886 1.22015 1.01646 1.00128 0.96974 1.21694 0.98658 0.93344 1.00491 1.21112 0.95526 0.98471 0.83468 1.44311 1.84568 1.03072 1.01201 1.19559 1.31050 0.90055 0.97704 0.91326 1.25772 0.97613 0.99695 1.01962 1.70202 1.35161 1.31132 1.21895 0.85281 0.77003 0.79291 0.79343 1.18716 1.22058 1.22372 1.20540 0.92459 0.84266 0.97232 1.21734 0.99180 0.98627 0.95177 0.86805 0.89000 0.88754 0.84757 0.85338 0.94222 0.93517 0.85473 0.86529 0.88262 0.88704 0.92125 0.88816 0.91195 0.91049 0.93702 0.89028 0.91465 0.92844 0.96787 0.94425 0.93682 0.98736 0.92372 0.93682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.31 10.33 71.24 0.74 -0.57 16 2 C 0.35 5.17 7.27 29.10 0.21 5.38 16 3 O -0.52 -13.83 16.72 -1.47 -0.02 -13.85 16 4 C -0.17 -1.60 5.55 29.85 0.17 -1.43 16 5 C -0.09 -1.82 3.79 30.59 0.12 -1.70 16 6 C -0.13 -1.99 4.71 29.85 0.14 -1.85 16 7 C 0.52 13.65 7.64 87.66 0.67 14.32 16 8 O -0.59 -21.47 15.00 -3.03 -0.05 -21.51 16 9 N -0.61 -15.06 3.06 -788.32 -2.41 -17.46 16 10 C 0.11 2.18 5.60 86.64 0.49 2.67 16 11 C -0.05 -1.45 0.55 -51.84 -0.03 -1.48 16 12 C -0.11 -3.03 4.45 31.56 0.14 -2.89 16 13 C 0.13 3.76 3.08 45.38 0.14 3.90 16 14 H 0.04 1.44 8.14 -2.39 -0.02 1.43 16 15 C -0.15 -3.79 9.11 71.98 0.66 -3.13 16 16 C -0.10 -2.69 4.84 30.41 0.15 -2.54 16 17 C 0.14 5.13 6.24 86.41 0.54 5.67 16 18 N -0.61 -28.77 2.98 -698.45 -2.08 -30.85 16 19 C -0.25 -13.42 9.57 84.03 0.80 -12.61 16 20 H 0.07 3.52 7.89 -2.91 -0.02 3.50 16 21 C -0.06 -3.06 4.90 84.86 0.42 -2.64 16 22 N -0.94 -55.44 11.20 21.65 0.24 -55.20 16 23 Si 0.96 44.31 29.59 68.60 2.03 46.34 16 24 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 25 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 26 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 27 C 0.18 8.42 5.01 86.41 0.43 8.85 16 28 C -0.11 -3.76 4.87 30.42 0.15 -3.61 16 29 H 0.11 0.02 8.00 -2.39 -0.02 0.00 16 30 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 32 H 0.13 0.42 8.14 -2.38 -0.02 0.40 16 33 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.04 1.03 8.06 -2.38 -0.02 1.01 16 35 H 0.05 1.14 8.06 -2.39 -0.02 1.12 16 36 H 0.13 1.16 8.14 -2.38 -0.02 1.14 16 37 H 0.12 1.37 7.86 -2.39 -0.02 1.35 16 38 H 0.10 1.38 8.00 -2.39 -0.02 1.36 16 39 H 0.09 1.50 7.40 -2.39 -0.02 1.48 16 40 H 0.06 2.05 6.18 -2.39 -0.01 2.04 16 41 H 0.09 2.18 7.69 -2.39 -0.02 2.16 16 42 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.04 1.33 6.87 -2.38 -0.02 1.32 16 45 H 0.09 1.78 8.10 -2.38 -0.02 1.76 16 46 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 47 H 0.05 1.94 7.93 -2.39 -0.02 1.92 16 48 H 0.01 0.53 7.63 -2.39 -0.02 0.52 16 49 H 0.25 14.24 8.31 -92.71 -0.77 13.46 16 50 H 0.04 2.46 6.01 -2.39 -0.01 2.44 16 51 H -0.01 -0.27 6.55 -2.39 -0.02 -0.28 16 52 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 53 H 0.04 1.58 7.81 -2.39 -0.02 1.56 16 Total: -1.00 -79.06 407.16 4.50 -74.56 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 0.87 Total: 11.66 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: 5.92 Total: 6.32 kcal Atomic # 7 Polarization: -99.26 SS G_CDS: -4.25 Total: -103.51 kcal Atomic # 8 Polarization: -35.30 SS G_CDS: -0.07 Total: -35.37 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -79.06 4.50 -74.56 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707127844.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.889 kcal (2) G-P(sol) polarization free energy of solvation -79.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds