Wall clock time and date at job start Tue Mar 31 2020 21:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.45853 * 2 1 4 4 C 1.53039 * 109.46251 * 240.03137 * 2 1 3 5 5 C 1.53193 * 109.31559 * 178.61237 * 4 2 1 6 6 N 1.46925 * 108.77122 * 54.63216 * 5 4 2 7 7 C 1.34782 * 120.62805 * 126.36824 * 6 5 4 8 8 O 1.21282 * 119.99831 * 176.01607 * 7 6 5 9 9 C 1.50700 * 119.99865 * 356.02320 * 7 6 5 10 10 H 1.09002 * 110.65242 * 302.08087 * 9 7 6 11 11 O 1.46765 * 111.59418 * 178.51277 * 9 7 6 12 12 C 1.43866 * 106.80256 * 200.46439 * 11 9 7 13 13 C 1.54009 * 107.04963 * 29.82965 * 12 11 9 14 14 H 1.09000 * 112.58333 * 232.31855 * 13 12 11 15 15 C 1.53734 * 109.30629 * 107.43039 * 13 12 11 16 16 C 1.54337 * 106.53715 * 243.98189 * 15 13 12 17 17 C 1.54903 * 103.77772 * 26.90823 * 16 15 13 18 18 C 1.54737 * 102.87217 * 320.49704 * 17 16 15 19 19 H 1.09000 * 113.35591 * 272.93838 * 18 17 16 20 20 C 1.46924 * 118.74164 * 306.64332 * 6 5 4 21 21 H 1.09003 * 109.58496 * 293.57009 * 20 6 5 22 22 C 1.52999 * 109.58872 * 173.14537 * 20 6 5 23 23 N 1.46507 * 109.47089 * 72.93555 * 22 20 6 24 24 C 1.36929 * 119.99964 * 174.77624 * 23 22 20 25 25 H 1.08008 * 120.00171 * 0.02562 * 24 23 22 26 26 C 1.38813 * 120.00048 * 180.02562 * 24 23 22 27 27 N 1.31622 * 120.00156 * 359.97438 * 26 24 23 28 28 Si 1.86800 * 119.99984 * 180.02562 * 26 24 23 29 29 H 1.48507 * 109.47183 * 90.00458 * 28 26 24 30 30 H 1.48507 * 109.46849 * 210.00061 * 28 26 24 31 31 H 1.48496 * 109.47529 * 329.99874 * 28 26 24 32 32 C 1.52758 * 109.00613 * 53.31093 * 20 6 5 33 33 H 1.09001 * 109.47102 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.47577 * 299.97239 * 1 2 3 35 35 H 1.09005 * 109.46992 * 59.96985 * 1 2 3 36 36 H 1.09005 * 109.49890 * 58.66033 * 4 2 1 37 37 H 1.09008 * 109.49691 * 298.56507 * 4 2 1 38 38 H 1.09000 * 109.58461 * 294.84749 * 5 4 2 39 39 H 1.08999 * 109.70030 * 174.48597 * 5 4 2 40 40 H 1.09003 * 109.91026 * 270.48397 * 12 11 9 41 41 H 1.08997 * 109.92225 * 149.18587 * 12 11 9 42 42 H 1.08998 * 110.05212 * 124.69279 * 15 13 12 43 43 H 1.09002 * 110.05261 * 3.26318 * 15 13 12 44 44 H 1.09002 * 110.56535 * 145.48633 * 16 15 13 45 45 H 1.09003 * 110.55997 * 268.33552 * 16 15 13 46 46 H 1.09004 * 110.73317 * 78.84753 * 17 16 15 47 47 H 1.09005 * 110.73328 * 201.97263 * 17 16 15 48 48 H 1.08996 * 109.47683 * 192.93678 * 22 20 6 49 49 H 1.09004 * 109.47030 * 312.94253 * 22 20 6 50 50 H 0.96998 * 120.00056 * 354.77938 * 23 22 20 51 51 H 0.96989 * 119.99983 * 179.97438 * 27 26 24 52 52 H 1.09006 * 109.56122 * 185.55137 * 32 20 6 53 53 H 1.08995 * 109.36048 * 65.50285 * 32 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 3.5714 -0.6886 -1.2642 6 7 4.0679 -1.2487 0.0001 7 6 4.9614 -2.2577 0.0002 8 8 5.4182 -2.6631 1.0480 9 6 5.3930 -2.8821 -1.3017 10 1 4.5325 -3.2742 -1.8439 11 8 6.3929 -3.9354 -1.0903 12 6 7.0777 -4.1161 -2.3426 13 6 7.0590 -2.7575 -3.0676 14 1 6.6735 -2.8310 -4.0845 15 6 8.4682 -2.1440 -3.0341 16 6 8.3623 -0.8452 -2.2072 17 6 7.1657 -1.1079 -1.2593 18 6 6.1625 -1.8558 -2.1696 19 1 5.5100 -1.1888 -2.7330 20 6 3.5671 -0.6921 1.2643 21 1 3.9097 0.3371 1.3715 22 6 4.0830 -1.5320 2.4345 23 7 5.5110 -1.2702 2.6314 24 6 6.1696 -1.8299 3.6934 25 1 5.6364 -2.4646 4.3859 26 6 7.5224 -1.5815 3.8803 27 7 8.1723 -0.8084 3.0362 28 14 8.4210 -2.3455 5.3288 29 1 8.9726 -3.6651 4.9290 30 1 9.5303 -1.4525 5.7500 31 1 7.4748 -2.5263 6.4589 32 6 2.0399 -0.7206 1.2501 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3634 0.5134 0.8902 35 1 -0.3633 0.5143 -0.8898 36 1 1.6572 -0.2208 -2.1399 37 1 1.6979 -1.7557 -1.2382 38 1 3.9143 0.3410 -1.3674 39 1 3.9437 -1.2831 -2.0985 40 1 6.5613 -4.8648 -2.9433 41 1 8.1068 -4.4264 -2.1617 42 1 8.8009 -1.9164 -4.0468 43 1 9.1651 -2.8342 -2.5584 44 1 9.2752 -0.6802 -1.6348 45 1 8.1570 0.0062 -2.8562 46 1 7.4680 -1.7354 -0.4208 47 1 6.7419 -0.1687 -0.9033 48 1 3.5370 -1.2676 3.3401 49 1 3.9342 -2.5895 2.2161 50 1 5.9899 -0.7005 2.0094 51 1 9.1175 -0.6345 3.1670 52 1 1.6572 -0.2205 2.1399 53 1 1.6979 -1.7554 1.2384 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707160821.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:05 Heat of formation + Delta-G solvation = -55.225345 kcal Electronic energy + Delta-G solvation = -32739.283148 eV Core-core repulsion = 28804.382191 eV Total energy + Delta-G solvation = -3934.900958 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.04738 -40.56253 -38.36531 -36.54714 -36.30876 -34.80199 -33.90180 -31.79908 -31.34303 -30.45631 -29.16785 -27.28991 -27.07209 -24.84730 -24.40609 -24.07406 -22.64745 -21.87224 -20.94447 -20.70613 -19.89970 -19.01178 -17.84223 -17.57649 -16.87886 -16.73550 -16.39629 -15.95678 -15.80720 -15.58178 -15.34930 -15.29860 -15.10825 -14.88240 -14.68943 -14.50346 -14.13257 -13.87213 -13.73303 -13.56523 -13.15974 -12.84498 -12.81805 -12.64680 -12.60634 -12.49378 -12.22174 -12.20908 -12.11825 -12.05656 -11.96814 -11.85779 -11.76812 -11.70431 -11.60478 -11.44038 -11.22975 -11.11174 -10.84277 -10.57622 -9.78269 -9.37339 -8.60916 -7.82357 -4.99865 1.38774 1.43911 1.50189 1.95137 1.97430 2.60727 3.01041 3.24271 3.46321 3.50666 3.67925 3.75494 3.86806 3.88671 4.05122 4.08842 4.13007 4.18353 4.31139 4.32925 4.34589 4.44314 4.49453 4.51625 4.57530 4.59795 4.65181 4.67374 4.74675 4.81841 4.85420 4.87201 4.92076 4.96814 4.99979 5.03942 5.05431 5.15112 5.17088 5.17998 5.25026 5.26859 5.34882 5.37900 5.45779 5.51400 5.52943 5.60910 5.79811 5.94466 6.37924 6.69188 7.44586 7.64861 8.26532 8.49695 9.41837 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.007778 B = 0.006285 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3599.042504 B = 4453.766542 C = 7144.100922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.088 4.088 3 H 0.074 0.926 4 C -0.122 4.122 5 C 0.096 3.904 6 N -0.606 5.606 7 C 0.478 3.522 8 O -0.498 6.498 9 C 0.065 3.935 10 H 0.116 0.884 11 O -0.395 6.395 12 C 0.040 3.960 13 C -0.110 4.110 14 H 0.135 0.865 15 C -0.113 4.113 16 C -0.119 4.119 17 C -0.112 4.112 18 C -0.100 4.100 19 H 0.142 0.858 20 C 0.152 3.848 21 H 0.058 0.942 22 C 0.164 3.836 23 N -0.698 5.698 24 C -0.210 4.210 25 H 0.057 0.943 26 C -0.083 4.083 27 N -0.967 5.967 28 Si 0.962 3.038 29 H -0.300 1.300 30 H -0.292 1.292 31 H -0.271 1.271 32 C -0.112 4.112 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.071 0.929 36 H 0.105 0.895 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.104 0.896 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.096 0.904 43 H 0.049 0.951 44 H 0.042 0.958 45 H 0.090 0.910 46 H 0.024 0.976 47 H 0.048 0.952 48 H 0.013 0.987 49 H 0.011 0.989 50 H 0.368 0.632 51 H 0.242 0.758 52 H 0.076 0.924 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.688 2.110 -22.044 26.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.106 4.106 3 H 0.092 0.908 4 C -0.160 4.160 5 C -0.025 4.025 6 N -0.344 5.344 7 C 0.264 3.736 8 O -0.369 6.369 9 C 0.004 3.996 10 H 0.134 0.866 11 O -0.315 6.315 12 C -0.036 4.036 13 C -0.129 4.129 14 H 0.153 0.847 15 C -0.151 4.151 16 C -0.156 4.156 17 C -0.150 4.150 18 C -0.118 4.118 19 H 0.160 0.840 20 C 0.048 3.952 21 H 0.076 0.924 22 C 0.037 3.963 23 N -0.338 5.338 24 C -0.343 4.343 25 H 0.075 0.925 26 C -0.274 4.274 27 N -0.620 5.620 28 Si 0.793 3.207 29 H -0.229 1.229 30 H -0.218 1.218 31 H -0.196 1.196 32 C -0.151 4.151 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.123 0.877 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.122 0.878 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.115 0.885 43 H 0.068 0.932 44 H 0.061 0.939 45 H 0.109 0.891 46 H 0.043 0.957 47 H 0.067 0.933 48 H 0.030 0.970 49 H 0.029 0.971 50 H 0.200 0.800 51 H 0.051 0.949 52 H 0.095 0.905 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.375 1.629 -21.086 25.023 hybrid contribution 1.358 -0.441 1.323 1.946 sum -12.017 1.188 -19.763 23.161 Atomic orbital electron populations 1.21763 0.93599 1.01953 1.02381 1.21098 0.96636 0.99345 0.93561 0.90756 1.21989 0.93690 1.01523 0.98807 1.22193 0.95437 0.99928 0.84975 1.47868 1.43840 1.35398 1.07308 1.20659 0.79851 0.82054 0.91038 1.91213 1.52524 1.60686 1.32493 1.23439 0.93458 0.89139 0.93528 0.86638 1.89459 1.51795 1.56446 1.33773 1.23617 0.97534 0.97832 0.84621 1.23167 0.95919 0.93120 1.00646 0.84705 1.22270 0.95686 0.96063 1.01056 1.22367 0.96900 0.99042 0.97338 1.22305 0.96707 0.98865 0.97142 1.23706 0.96559 0.96469 0.95112 0.84038 1.21176 0.94892 0.96026 0.83089 0.92414 1.20865 0.84903 0.96463 0.94031 1.42218 1.05156 1.56906 1.29539 1.19444 0.92420 1.20807 1.01667 0.92527 1.25310 0.97322 1.02750 1.02015 1.69819 1.08178 1.44174 1.39835 0.85272 0.78405 0.77101 0.79914 1.22887 1.21825 1.19606 1.21844 0.91858 1.01450 0.99937 0.92857 0.92790 0.91024 0.87706 0.91743 0.90708 0.87805 0.90129 0.90630 0.88514 0.93186 0.93925 0.89127 0.95714 0.93281 0.96973 0.97133 0.80027 0.94924 0.90530 0.92199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.19 71.98 0.66 -1.21 16 2 C -0.09 -1.50 2.68 -10.77 -0.03 -1.53 16 3 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 4 C -0.12 -1.74 5.36 30.67 0.16 -1.58 16 5 C 0.10 1.80 5.60 86.36 0.48 2.28 16 6 N -0.61 -18.81 2.98 -795.82 -2.37 -21.18 16 7 C 0.48 18.83 5.33 87.66 0.47 19.30 16 8 O -0.50 -26.81 10.31 14.22 0.15 -26.66 16 9 C 0.06 1.98 2.58 30.49 0.08 2.06 16 10 H 0.12 2.67 7.79 -2.39 -0.02 2.65 16 11 O -0.40 -15.18 10.52 -131.72 -1.39 -16.56 16 12 C 0.04 1.04 7.27 72.32 0.53 1.57 16 13 C -0.11 -2.16 3.95 -9.29 -0.04 -2.19 16 14 H 0.14 1.49 8.14 -2.39 -0.02 1.47 16 15 C -0.11 -2.43 6.40 31.30 0.20 -2.23 16 16 C -0.12 -3.22 6.84 31.70 0.22 -3.01 16 17 C -0.11 -3.87 5.20 31.84 0.17 -3.70 16 18 C -0.10 -2.38 2.94 -8.64 -0.03 -2.40 16 19 H 0.14 2.17 6.16 -2.39 -0.01 2.16 16 20 C 0.15 5.23 2.89 44.83 0.13 5.36 16 21 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 22 C 0.16 7.70 4.89 86.38 0.42 8.12 16 23 N -0.70 -40.48 3.20 -343.44 -1.10 -41.58 16 24 C -0.21 -13.51 9.73 84.03 0.82 -12.69 16 25 H 0.06 3.60 7.83 -2.91 -0.02 3.58 16 26 C -0.08 -5.37 5.50 84.86 0.47 -4.91 16 27 N -0.97 -65.36 13.06 21.65 0.28 -65.07 16 28 Si 0.96 52.40 29.55 68.60 2.03 54.43 16 29 H -0.30 -16.53 7.11 99.48 0.71 -15.83 16 30 H -0.29 -15.55 7.11 99.48 0.71 -14.84 16 31 H -0.27 -13.92 7.11 99.48 0.71 -13.22 16 32 C -0.11 -2.79 4.59 30.53 0.14 -2.65 16 33 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.05 0.74 8.14 -2.39 -0.02 0.73 16 35 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 36 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 37 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 38 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.10 1.48 4.26 -2.39 -0.01 1.47 16 40 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.08 2.06 7.06 -2.39 -0.02 2.04 16 42 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.05 1.26 7.03 -2.39 -0.02 1.24 16 44 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 46 H 0.02 1.19 7.13 -2.38 -0.02 1.17 16 47 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 48 H 0.01 0.58 8.09 -2.39 -0.02 0.56 16 49 H 0.01 0.57 6.35 -2.38 -0.02 0.55 16 50 H 0.37 22.71 7.22 -92.71 -0.67 22.04 16 51 H 0.24 15.91 8.31 -92.72 -0.77 15.14 16 52 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 53 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -88.59 389.38 2.67 -85.92 By element: Atomic # 1 Polarization: 29.91 SS G_CDS: 0.22 Total: 30.13 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: 4.85 Total: 0.59 kcal Atomic # 7 Polarization: -124.65 SS G_CDS: -3.19 Total: -127.83 kcal Atomic # 8 Polarization: -41.99 SS G_CDS: -1.24 Total: -43.22 kcal Atomic # 14 Polarization: 52.40 SS G_CDS: 2.03 Total: 54.43 kcal Total: -88.59 2.67 -85.92 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707160821.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.690 kcal (2) G-P(sol) polarization free energy of solvation -88.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds