Wall clock time and date at job start Tue Mar 31 2020 21:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50697 * 119.99938 * 2 1 4 4 C 1.53006 * 109.46858 * 120.39655 * 3 2 1 5 5 C 1.50699 * 109.54020 * 304.89480 * 4 3 2 6 6 O 1.21284 * 119.99964 * 126.55619 * 5 4 3 7 7 N 1.34773 * 120.00050 * 306.54912 * 5 4 3 8 8 C 1.46924 * 120.63085 * 354.97954 * 7 5 4 9 9 C 1.53195 * 108.77284 * 233.60504 * 8 7 5 10 10 C 1.53038 * 109.31640 * 305.36703 * 9 8 7 11 11 H 1.08995 * 109.46193 * 181.39116 * 10 9 8 12 12 N 1.46509 * 109.45581 * 301.34343 * 10 9 8 13 13 C 1.36930 * 120.00001 * 275.06720 * 12 10 9 14 14 H 1.08003 * 120.00189 * 0.02562 * 13 12 10 15 15 C 1.38816 * 119.99870 * 180.02562 * 13 12 10 16 16 N 1.31614 * 119.99846 * 0.02562 * 15 13 12 17 17 Si 1.86809 * 119.99907 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46662 * 90.00117 * 17 15 13 19 19 H 1.48497 * 109.46863 * 209.99907 * 17 15 13 20 20 H 1.48502 * 109.46953 * 329.99998 * 17 15 13 21 21 C 1.53038 * 109.53946 * 61.36157 * 10 9 8 22 22 H 1.08998 * 109.49416 * 58.61975 * 21 10 9 23 23 C 1.52995 * 109.49830 * 178.68491 * 21 10 9 24 24 C 1.46931 * 120.62925 * 174.97541 * 7 5 4 25 25 C 1.53172 * 109.61557 * 65.11605 * 4 3 2 26 26 C 1.53099 * 109.16517 * 176.89023 * 25 4 3 27 27 O 1.42901 * 109.41195 * 302.39837 * 26 25 4 28 28 C 1.42900 * 114.10471 * 61.15478 * 27 26 25 29 29 C 1.53099 * 109.41155 * 298.83998 * 28 27 26 30 30 H 1.07998 * 120.00618 * 185.01509 * 1 2 3 31 31 H 1.08006 * 119.99783 * 5.02395 * 1 2 3 32 32 H 1.08000 * 119.99366 * 179.97438 * 2 1 3 33 33 H 1.08995 * 109.47282 * 0.39455 * 3 2 1 34 34 H 1.09000 * 109.46665 * 240.39087 * 3 2 1 35 35 H 1.09002 * 109.58939 * 113.82211 * 8 7 5 36 36 H 1.08993 * 109.70230 * 353.46488 * 8 7 5 37 37 H 1.09003 * 109.49740 * 185.40937 * 9 8 7 38 38 H 1.09002 * 109.52446 * 65.33402 * 9 8 7 39 39 H 0.96994 * 119.99638 * 95.06945 * 12 10 9 40 40 H 0.97009 * 119.99930 * 180.02562 * 16 15 13 41 41 H 1.08999 * 109.47281 * 59.99896 * 23 21 10 42 42 H 1.09000 * 109.47324 * 300.00201 * 23 21 10 43 43 H 1.08997 * 109.47659 * 180.02562 * 23 21 10 44 44 H 1.08997 * 109.58711 * 6.61100 * 24 7 5 45 45 H 1.08996 * 109.58428 * 246.17927 * 24 7 5 46 46 H 1.09000 * 109.52513 * 296.79483 * 25 4 3 47 47 H 1.08996 * 109.52437 * 56.98639 * 25 4 3 48 48 H 1.08996 * 109.48054 * 182.40685 * 26 25 4 49 49 H 1.09002 * 109.47316 * 62.37378 * 26 25 4 50 50 H 1.08997 * 109.48126 * 178.86001 * 28 27 26 51 51 H 1.09002 * 109.48152 * 58.82231 * 28 27 26 52 52 H 1.08997 * 109.52568 * 297.70559 * 29 28 27 53 53 H 1.08998 * 109.51853 * 177.51122 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9506 1.3818 1.2443 5 6 2.1084 1.1775 2.4771 6 8 2.4138 0.3271 3.2862 7 7 1.0158 1.9399 2.6808 8 6 0.6940 3.0457 1.7685 9 6 0.5177 4.3269 2.5897 10 6 -0.5277 4.0884 3.6817 11 1 -0.6730 5.0059 4.2518 12 7 -1.7959 3.6914 3.0649 13 6 -2.6691 4.6473 2.6189 14 1 -2.4228 5.6938 2.7214 15 6 -3.8710 4.2711 2.0349 16 7 -4.1714 2.9958 1.9104 17 14 -5.0626 5.5751 1.4271 18 1 -4.7610 5.8989 0.0096 19 1 -6.4526 5.0633 1.5331 20 1 -4.9213 6.7994 2.2556 21 6 -0.0460 2.9774 4.6174 22 1 0.9095 3.2617 5.0581 23 6 -1.0765 2.7623 5.7276 24 6 0.1238 1.6809 3.8193 25 6 4.0289 0.2962 1.1747 26 6 4.9571 0.4314 2.3848 27 8 5.5290 1.7409 2.4007 28 6 4.5706 2.7949 2.5124 29 6 3.6270 2.7546 1.3074 30 1 -0.5401 -0.9317 0.0818 31 1 -0.5400 0.9318 -0.0819 32 1 1.8499 -0.9354 0.0004 33 1 1.3552 2.1335 0.0071 34 1 2.6848 1.3658 -0.8935 35 1 -0.2307 2.8229 1.2360 36 1 1.5048 3.1792 1.0525 37 1 0.1847 5.1342 1.9373 38 1 1.4680 4.5988 3.0490 39 1 -2.0169 2.7516 2.9725 40 1 -5.0111 2.7329 1.5020 41 1 -2.0316 2.4769 5.2866 42 1 -1.1992 3.6858 6.2935 43 1 -0.7329 1.9712 6.3941 44 1 0.5603 0.9131 4.4581 45 1 -0.8472 1.3468 3.4540 46 1 3.5576 -0.6866 1.1852 47 1 4.6063 0.4145 0.2579 48 1 5.7517 -0.3117 2.3182 49 1 4.3865 0.2728 3.2999 50 1 5.0870 3.7545 2.5378 51 1 3.9951 2.6673 3.4293 52 1 4.1963 2.9226 0.3932 53 1 2.8683 3.5301 1.4129 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715426973.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:05 Heat of formation + Delta-G solvation = -53.250682 kcal Electronic energy + Delta-G solvation = -32839.645733 eV Core-core repulsion = 28904.830403 eV Total energy + Delta-G solvation = -3934.815330 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.43953 -40.01620 -38.60727 -37.21156 -35.74905 -34.41832 -33.77458 -32.93764 -31.96018 -30.91767 -28.82501 -27.60501 -26.78217 -25.43400 -24.71346 -24.19355 -23.03779 -22.58671 -20.76266 -20.31176 -19.46737 -19.23427 -17.58643 -17.35894 -17.00588 -16.71006 -16.64288 -16.39386 -16.06129 -15.82143 -15.52171 -15.42263 -14.93246 -14.88692 -14.76556 -14.57935 -14.26863 -14.02271 -13.67232 -13.50807 -13.22907 -13.12519 -13.00226 -12.86122 -12.81727 -12.70070 -12.48375 -12.34998 -12.32079 -12.18034 -12.10084 -11.89260 -11.78605 -11.58383 -11.51555 -11.20174 -11.13009 -10.85245 -10.46419 -10.40442 -10.08588 -9.50121 -8.89063 -7.86440 -5.12030 1.34218 1.49912 1.51277 1.58253 1.65837 2.05928 2.61112 2.97716 3.34514 3.47607 3.50669 3.74193 3.82040 3.88620 3.96622 4.02517 4.08025 4.10563 4.14300 4.22805 4.30477 4.36775 4.40382 4.50706 4.57653 4.60070 4.63558 4.67846 4.74979 4.76770 4.81100 4.86298 4.87706 4.91446 4.98065 5.03158 5.04873 5.10833 5.12844 5.14983 5.22494 5.27597 5.32934 5.34450 5.48773 5.62366 5.68135 5.71979 5.83396 6.26858 6.34946 6.54160 7.21805 7.43167 8.19664 8.43425 9.36523 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015446 B = 0.004000 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.273437 B = 6997.961864 C = 7511.413891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.157 4.157 3 C -0.097 4.097 4 C -0.066 4.066 5 C 0.526 3.474 6 O -0.579 6.579 7 N -0.591 5.591 8 C 0.103 3.897 9 C -0.145 4.145 10 C 0.173 3.827 11 H 0.045 0.955 12 N -0.722 5.722 13 C -0.225 4.225 14 H 0.074 0.926 15 C -0.069 4.069 16 N -0.967 5.967 17 Si 0.959 3.041 18 H -0.290 1.290 19 H -0.305 1.305 20 H -0.273 1.273 21 C -0.097 4.097 22 H 0.083 0.917 23 C -0.131 4.131 24 C 0.126 3.874 25 C -0.122 4.122 26 C 0.046 3.954 27 O -0.395 6.395 28 C 0.059 3.941 29 C -0.154 4.154 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.115 0.885 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.051 0.949 36 H 0.121 0.879 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.373 0.627 40 H 0.246 0.754 41 H 0.039 0.961 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.077 0.923 45 H 0.046 0.954 46 H 0.072 0.928 47 H 0.097 0.903 48 H 0.102 0.898 49 H 0.056 0.944 50 H 0.117 0.883 51 H 0.029 0.971 52 H 0.108 0.892 53 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.308 -1.553 -2.366 18.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.175 4.175 3 C -0.133 4.133 4 C -0.069 4.069 5 C 0.316 3.684 6 O -0.459 6.459 7 N -0.321 5.321 8 C -0.019 4.019 9 C -0.186 4.186 10 C 0.064 3.936 11 H 0.063 0.937 12 N -0.364 5.364 13 C -0.357 4.357 14 H 0.092 0.908 15 C -0.262 4.262 16 N -0.618 5.618 17 Si 0.790 3.210 18 H -0.217 1.217 19 H -0.232 1.232 20 H -0.198 1.198 21 C -0.117 4.117 22 H 0.101 0.899 23 C -0.189 4.189 24 C 0.003 3.997 25 C -0.160 4.160 26 C -0.030 4.030 27 O -0.314 6.314 28 C -0.018 4.018 29 C -0.191 4.191 30 H 0.112 0.888 31 H 0.102 0.898 32 H 0.133 0.867 33 H 0.103 0.897 34 H 0.126 0.874 35 H 0.070 0.930 36 H 0.138 0.862 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.207 0.793 40 H 0.055 0.945 41 H 0.058 0.942 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.096 0.904 45 H 0.065 0.935 46 H 0.091 0.909 47 H 0.115 0.885 48 H 0.120 0.880 49 H 0.074 0.926 50 H 0.135 0.865 51 H 0.047 0.953 52 H 0.126 0.874 53 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 18.568 -1.775 -1.971 18.756 hybrid contribution -2.047 -0.050 -0.232 2.061 sum 16.520 -1.825 -2.203 16.766 Atomic orbital electron populations 1.23856 0.96498 1.01622 1.00739 1.22939 0.95475 0.98969 1.00130 1.21247 0.98712 0.96383 0.97006 1.20814 0.94985 0.98667 0.92435 1.20863 0.80329 0.79903 0.87309 1.90565 1.71005 1.36336 1.48040 1.47971 1.24438 1.32009 1.27690 1.22286 1.01639 0.85644 0.92329 1.22450 0.99692 0.97012 0.99424 1.20416 0.85699 0.95335 0.92118 0.93675 1.42560 1.17125 1.05527 1.71148 1.19544 0.97230 0.89539 1.29374 0.90772 1.25314 1.00004 0.97257 1.03591 1.69800 1.24658 1.15479 1.51857 0.85344 0.78389 0.79079 0.78161 1.21750 1.23185 1.19816 1.21602 0.99329 0.94988 0.95758 0.89907 1.21596 0.98344 1.01640 0.97357 1.21411 0.92709 0.97658 0.87934 1.22019 0.95771 0.98044 1.00155 1.22896 0.97394 0.84343 0.98399 1.87859 1.33843 1.15101 1.94608 1.22639 0.91332 0.91784 0.96024 1.22619 1.00005 0.94875 1.01615 0.88816 0.89807 0.86684 0.89655 0.87387 0.93021 0.86182 0.91277 0.90520 0.79309 0.94510 0.94216 0.92259 0.92016 0.90429 0.93531 0.90930 0.88483 0.87975 0.92621 0.86516 0.95266 0.87383 0.88491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.37 14.32 67.78 0.97 -4.40 16 2 C -0.16 -3.76 8.05 25.64 0.21 -3.55 16 3 C -0.10 -1.95 4.33 29.85 0.13 -1.82 16 4 C -0.07 -1.42 0.28 -52.81 -0.01 -1.43 16 5 C 0.53 15.15 4.33 87.66 0.38 15.53 16 6 O -0.58 -20.07 13.07 -3.04 -0.04 -20.11 16 7 N -0.59 -17.50 2.96 -818.91 -2.43 -19.93 16 8 C 0.10 2.90 3.78 86.36 0.33 3.23 16 9 C -0.15 -4.20 5.64 30.67 0.17 -4.03 16 10 C 0.17 6.05 2.53 45.02 0.11 6.16 16 11 H 0.05 1.63 8.08 -2.39 -0.02 1.62 16 12 N -0.72 -32.38 3.64 -322.81 -1.18 -33.56 16 13 C -0.22 -11.41 9.93 84.04 0.83 -10.57 16 14 H 0.07 3.63 7.83 -2.91 -0.02 3.61 16 15 C -0.07 -3.75 5.50 84.86 0.47 -3.28 16 16 N -0.97 -56.44 13.06 21.65 0.28 -56.16 16 17 Si 0.96 44.39 29.55 68.60 2.03 46.41 16 18 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 19 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 21 C -0.10 -3.03 2.67 -10.72 -0.03 -3.05 16 22 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 23 C -0.13 -4.16 9.05 71.98 0.65 -3.51 16 24 C 0.13 4.20 5.43 86.36 0.47 4.67 16 25 C -0.12 -2.48 4.34 30.68 0.13 -2.35 16 26 C 0.05 1.06 6.56 72.02 0.47 1.53 16 27 O -0.40 -9.34 10.76 -148.98 -1.60 -10.94 16 28 C 0.06 1.20 6.62 72.02 0.48 1.67 16 29 C -0.15 -2.72 4.62 30.69 0.14 -2.58 16 30 H 0.09 2.60 8.06 -2.91 -0.02 2.58 16 31 H 0.08 2.68 7.56 -2.91 -0.02 2.66 16 32 H 0.12 2.52 7.20 -2.91 -0.02 2.50 16 33 H 0.09 1.86 4.21 -2.39 -0.01 1.85 16 34 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.05 1.84 7.40 -2.39 -0.02 1.82 16 36 H 0.12 2.67 2.48 -2.39 -0.01 2.66 16 37 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.37 18.49 5.92 -92.71 -0.55 17.94 16 40 H 0.25 14.23 8.31 -92.70 -0.77 13.46 16 41 H 0.04 1.50 7.54 -2.39 -0.02 1.48 16 42 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.08 2.65 7.00 -2.39 -0.02 2.64 16 45 H 0.05 1.81 6.64 -2.39 -0.02 1.80 16 46 H 0.07 1.58 6.93 -2.39 -0.02 1.57 16 47 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 48 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 49 H 0.06 1.61 5.58 -2.39 -0.01 1.60 16 50 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 51 H 0.03 0.71 7.38 -2.39 -0.02 0.70 16 52 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 53 H 0.10 1.64 4.94 -2.39 -0.01 1.63 16 Total: -1.00 -63.03 386.81 3.32 -59.70 By element: Atomic # 1 Polarization: 42.00 SS G_CDS: 0.35 Total: 42.36 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: 5.90 Total: -7.78 kcal Atomic # 7 Polarization: -106.32 SS G_CDS: -3.32 Total: -109.64 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -1.64 Total: -31.05 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -63.03 3.32 -59.70 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715426973.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.454 kcal (2) G-P(sol) polarization free energy of solvation -63.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds