Wall clock time and date at job start Tue Mar 31 2020 20:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47171 * 2 1 4 4 C 1.53001 * 109.47090 * 239.99965 * 2 1 3 5 5 C 1.52998 * 109.47090 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.46959 * 60.00070 * 5 4 2 7 7 C 1.53000 * 109.47005 * 299.99529 * 6 5 4 8 8 H 1.09005 * 109.46855 * 180.02562 * 7 6 5 9 9 O 1.42897 * 109.47157 * 300.00440 * 7 6 5 10 10 C 1.42906 * 113.99552 * 269.99483 * 9 7 6 11 11 C 1.50709 * 109.46479 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00011 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99530 * 180.02562 * 11 10 9 14 14 C 1.46495 * 119.99711 * 180.02562 * 13 11 10 15 15 C 1.50701 * 109.46972 * 179.97438 * 14 13 11 16 16 C 1.29463 * 117.69627 * 94.99817 * 15 14 13 17 17 C 1.50314 * 123.64946 * 180.88090 * 16 15 14 18 18 N 1.47008 * 109.17229 * 349.01954 * 17 16 15 19 19 C 1.36926 * 121.37975 * 222.67899 * 18 17 16 20 20 H 1.08000 * 120.00627 * 156.00574 * 19 18 17 21 21 C 1.38819 * 119.99975 * 335.99915 * 19 18 17 22 22 N 1.31619 * 119.99874 * 344.70348 * 21 19 18 23 23 Si 1.86800 * 120.00129 * 164.69417 * 21 19 18 24 24 H 1.48505 * 109.46836 * 60.00445 * 23 21 19 25 25 H 1.48493 * 109.47173 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47288 * 300.00604 * 23 21 19 27 27 C 1.47342 * 117.24505 * 42.94572 * 18 17 16 28 28 C 1.49973 * 117.69456 * 275.01803 * 15 14 13 29 29 C 1.53002 * 109.46959 * 120.00035 * 2 1 3 30 30 H 1.09002 * 109.47204 * 300.00064 * 1 2 3 31 31 H 1.09001 * 109.47611 * 60.00192 * 1 2 3 32 32 H 1.08997 * 109.47276 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47142 * 300.00052 * 4 2 1 34 34 H 1.09001 * 109.47023 * 59.99482 * 4 2 1 35 35 H 1.09001 * 109.46906 * 179.97438 * 5 4 2 36 36 H 1.08997 * 109.47276 * 299.99540 * 5 4 2 37 37 H 1.08999 * 109.46641 * 179.97438 * 6 5 4 38 38 H 1.09001 * 109.47208 * 59.99987 * 6 5 4 39 39 H 1.09004 * 109.46586 * 60.00895 * 10 9 7 40 40 H 1.08999 * 109.47535 * 300.00369 * 10 9 7 41 41 H 0.97003 * 119.99937 * 0.02562 * 13 11 10 42 42 H 1.08995 * 109.47763 * 59.99821 * 14 13 11 43 43 H 1.08999 * 109.47003 * 299.99602 * 14 13 11 44 44 H 1.07997 * 118.17094 * 0.90440 * 16 15 14 45 45 H 1.09005 * 109.52272 * 229.11249 * 17 16 15 46 46 H 1.09002 * 109.57798 * 108.96184 * 17 16 15 47 47 H 0.96996 * 119.99854 * 179.97438 * 22 21 19 48 48 H 1.09007 * 109.77678 * 57.81515 * 27 18 17 49 49 H 1.08998 * 109.78094 * 178.61921 * 27 18 17 50 50 H 1.09003 * 109.31479 * 281.27022 * 28 15 14 51 51 H 1.09000 * 109.31454 * 40.88289 * 28 15 14 52 52 H 1.09001 * 109.47208 * 59.99987 * 29 2 1 53 53 H 1.09001 * 109.46860 * 299.99475 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7218 -1.2489 6 6 4.0794 -1.4435 0.0003 7 6 3.5694 -0.7221 1.2496 8 1 3.9328 -1.2360 2.1396 9 8 4.0463 0.6249 1.2498 10 6 5.3059 0.7954 1.9029 11 6 5.7097 2.2462 1.8441 12 8 4.9896 3.0545 1.2972 13 7 6.8712 2.6453 2.3993 14 6 7.2635 4.0556 2.3426 15 6 8.5919 4.2355 3.0312 16 6 9.6579 4.2156 2.2969 17 6 11.0498 4.3625 2.8451 18 7 10.9729 4.7858 4.2508 19 6 11.8034 5.7529 4.7507 20 1 11.5085 6.3214 5.6203 21 6 13.0246 6.0026 4.1397 22 7 13.5227 5.1343 3.2851 23 14 13.9610 7.5711 4.5302 24 1 14.2708 7.6141 5.9820 25 1 15.2259 7.5991 3.7528 26 1 13.1306 8.7471 4.1662 27 6 9.9691 4.1222 5.1011 28 6 8.5858 4.4245 4.5190 29 6 2.0399 -0.7213 1.2493 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.6766 -1.7489 -1.2492 34 1 1.6765 -0.2075 -2.1392 35 1 3.9332 -1.2361 -2.1387 36 1 3.9337 0.3057 -1.2488 37 1 5.1694 -1.4442 0.0003 38 1 3.7157 -2.4710 0.0001 39 1 6.0597 0.1875 1.4025 40 1 5.2205 0.4843 2.9440 41 1 7.4473 1.9988 2.8363 42 1 6.5098 4.6630 2.8437 43 1 7.3483 4.3677 1.3017 44 1 9.5405 4.0866 1.2311 45 1 11.5913 5.1122 2.2681 46 1 11.5706 3.4071 2.7804 47 1 14.3758 5.3090 2.8579 48 1 10.1412 3.0458 5.1033 49 1 10.0338 4.5087 6.1182 50 1 8.3145 5.4545 4.7505 51 1 7.8547 3.7503 4.9651 52 1 1.6766 -1.7489 1.2493 53 1 1.6766 -0.2073 2.1392 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734632953.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:24 Heat of formation + Delta-G solvation = -85.942313 kcal Electronic energy + Delta-G solvation = -29078.129444 eV Core-core repulsion = 25141.896499 eV Total energy + Delta-G solvation = -3936.232945 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.00939 -40.17372 -39.29182 -37.25730 -36.36033 -34.55301 -33.15797 -32.69755 -31.48854 -31.26041 -29.48056 -27.79283 -27.24131 -25.59119 -24.35455 -23.43839 -22.84262 -22.17122 -21.68237 -20.50467 -19.51312 -18.59962 -17.64415 -17.36533 -17.09928 -16.97918 -16.45624 -16.34272 -15.94498 -15.74967 -15.50106 -15.31145 -15.18394 -14.86045 -14.71507 -14.40173 -14.10774 -13.90703 -13.68015 -13.55821 -13.27703 -13.19747 -13.09242 -12.91080 -12.77586 -12.71532 -12.68638 -12.58814 -12.29514 -12.25594 -12.10992 -11.80042 -11.70902 -11.44127 -11.28301 -11.19553 -10.92577 -10.85548 -10.67766 -10.38999 -10.11577 -9.65554 -8.74910 -7.88523 -5.29702 1.13826 1.46960 1.49747 1.55865 1.58956 2.07663 2.51172 3.10721 3.28642 3.62282 3.73656 3.79446 3.84799 3.90181 3.94342 3.96121 4.22008 4.22571 4.30053 4.31993 4.41965 4.44282 4.53605 4.55672 4.63484 4.65024 4.71893 4.74226 4.83239 4.84087 4.91571 4.92059 4.94873 5.01165 5.08319 5.10705 5.17996 5.21799 5.34335 5.34792 5.37073 5.41256 5.43812 5.45742 5.48477 5.61331 5.65252 5.76548 6.15906 6.21982 6.33918 6.58359 7.13581 7.22991 7.83753 8.37234 9.19731 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.032012 B = 0.001754 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.449878 B =15957.584339 C =16141.941810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 H 0.046 0.954 4 C -0.109 4.109 5 C -0.118 4.118 6 C -0.138 4.138 7 C 0.081 3.919 8 H 0.084 0.916 9 O -0.381 6.381 10 C 0.046 3.954 11 C 0.508 3.492 12 O -0.577 6.577 13 N -0.709 5.709 14 C 0.169 3.831 15 C -0.138 4.138 16 C -0.141 4.141 17 C 0.205 3.795 18 N -0.615 5.615 19 C -0.258 4.258 20 H 0.070 0.930 21 C -0.054 4.054 22 N -0.939 5.939 23 Si 0.967 3.033 24 H -0.274 1.274 25 H -0.295 1.295 26 H -0.282 1.282 27 C 0.138 3.862 28 C -0.084 4.084 29 C -0.107 4.107 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.040 0.960 37 H 0.065 0.935 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.109 0.891 41 H 0.415 0.585 42 H 0.067 0.933 43 H 0.058 0.942 44 H 0.111 0.889 45 H 0.056 0.944 46 H 0.016 0.984 47 H 0.250 0.750 48 H 0.030 0.970 49 H 0.059 0.941 50 H 0.062 0.938 51 H 0.090 0.910 52 H 0.096 0.904 53 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.050 -17.593 -4.338 29.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 H 0.064 0.936 4 C -0.146 4.146 5 C -0.155 4.155 6 C -0.176 4.176 7 C 0.024 3.976 8 H 0.102 0.898 9 O -0.300 6.300 10 C -0.033 4.033 11 C 0.296 3.704 12 O -0.456 6.456 13 N -0.363 5.363 14 C 0.046 3.954 15 C -0.139 4.139 16 C -0.162 4.162 17 C 0.079 3.921 18 N -0.339 5.339 19 C -0.388 4.388 20 H 0.088 0.912 21 C -0.249 4.249 22 N -0.585 5.585 23 Si 0.796 3.204 24 H -0.200 1.200 25 H -0.221 1.221 26 H -0.208 1.208 27 C 0.013 3.987 28 C -0.123 4.123 29 C -0.144 4.144 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.059 0.941 37 H 0.083 0.917 38 H 0.109 0.891 39 H 0.119 0.881 40 H 0.126 0.874 41 H 0.252 0.748 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.129 0.871 45 H 0.074 0.926 46 H 0.034 0.966 47 H 0.059 0.941 48 H 0.048 0.952 49 H 0.077 0.923 50 H 0.080 0.920 51 H 0.108 0.892 52 H 0.115 0.885 53 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -23.528 -16.844 -4.873 29.343 hybrid contribution 1.512 0.773 0.141 1.704 sum -22.016 -16.070 -4.732 27.665 Atomic orbital electron populations 1.21809 0.94572 1.02281 1.01471 1.21026 0.95724 0.99104 0.95217 0.93579 1.21553 0.95099 1.00880 0.97088 1.21415 0.96100 1.00070 0.97946 1.22037 1.00893 1.00024 0.94648 1.22392 0.95124 0.81854 0.98270 0.89807 1.88057 1.35014 1.28835 1.78052 1.22326 0.88627 0.91936 1.00409 1.20959 0.80650 0.91293 0.77536 1.90705 1.53430 1.56407 1.45022 1.45904 1.21727 1.10167 1.58485 1.20191 0.93568 0.82287 0.99373 1.20588 0.93055 1.04079 0.96140 1.22950 0.95668 0.98060 0.99474 1.19407 0.90650 0.97143 0.84858 1.44403 1.39878 1.43771 1.05868 1.19477 0.96499 1.10256 1.12551 0.91222 1.25733 0.97244 1.01194 1.00703 1.70150 1.19322 1.35434 1.33642 0.85338 0.77394 0.79967 0.77747 1.20014 1.22069 1.20784 1.21156 0.88292 0.95203 0.94036 1.20700 0.98218 1.01582 0.91758 1.21695 0.92847 1.01933 0.97959 0.93036 0.93034 0.91438 0.90619 0.92705 0.91629 0.94081 0.91668 0.89087 0.88119 0.87381 0.74815 0.91515 0.92353 0.87078 0.92613 0.96603 0.94122 0.95196 0.92254 0.91974 0.89152 0.88543 0.91928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.19 71.98 0.66 -1.24 16 2 C -0.09 -1.49 2.58 -10.79 -0.03 -1.52 16 3 H 0.05 1.08 7.68 -2.39 -0.02 1.06 16 4 C -0.11 -1.55 5.20 30.59 0.16 -1.40 16 5 C -0.12 -1.87 5.78 30.59 0.18 -1.69 16 6 C -0.14 -1.70 5.63 30.59 0.17 -1.53 16 7 C 0.08 1.11 2.92 30.58 0.09 1.20 16 8 H 0.08 0.77 7.79 -2.38 -0.02 0.75 16 9 O -0.38 -8.10 8.17 -129.94 -1.06 -9.16 16 10 C 0.05 0.78 6.23 71.24 0.44 1.23 16 11 C 0.51 12.91 7.91 87.66 0.69 13.60 16 12 O -0.58 -20.67 16.50 16.01 0.26 -20.41 16 13 N -0.71 -16.03 5.55 -466.79 -2.59 -18.62 16 14 C 0.17 4.68 5.66 85.63 0.48 5.17 16 15 C -0.14 -4.35 5.22 -15.14 -0.08 -4.42 16 16 C -0.14 -5.16 9.47 27.10 0.26 -4.91 16 17 C 0.20 9.71 5.21 85.41 0.45 10.15 16 18 N -0.62 -30.26 3.01 -703.39 -2.12 -32.38 16 19 C -0.26 -14.04 9.71 84.04 0.82 -13.22 16 20 H 0.07 3.68 7.87 -2.91 -0.02 3.65 16 21 C -0.05 -2.99 5.01 84.86 0.43 -2.56 16 22 N -0.94 -54.90 11.07 21.65 0.24 -54.66 16 23 Si 0.97 44.81 29.58 68.60 2.03 46.84 16 24 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 25 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 26 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 27 C 0.14 5.34 6.58 86.25 0.57 5.91 16 28 C -0.08 -2.62 5.94 29.65 0.18 -2.44 16 29 C -0.11 -1.41 4.94 30.58 0.15 -1.26 16 30 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.04 0.91 7.68 -2.39 -0.02 0.89 16 37 H 0.06 0.77 7.87 -2.39 -0.02 0.76 16 38 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.10 1.23 7.87 -2.38 -0.02 1.22 16 40 H 0.11 1.18 8.08 -2.39 -0.02 1.16 16 41 H 0.42 7.26 8.46 -92.71 -0.78 6.47 16 42 H 0.07 1.90 8.11 -2.39 -0.02 1.88 16 43 H 0.06 1.75 7.78 -2.39 -0.02 1.73 16 44 H 0.11 3.66 7.73 -2.91 -0.02 3.64 16 45 H 0.06 3.03 6.42 -2.38 -0.02 3.01 16 46 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 48 H 0.03 1.11 8.14 -2.38 -0.02 1.10 16 49 H 0.06 2.24 7.96 -2.39 -0.02 2.22 16 50 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 51 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 52 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 53 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -71.47 413.86 2.46 -69.01 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 0.08 Total: 18.31 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: 5.61 Total: 1.07 kcal Atomic # 7 Polarization: -101.20 SS G_CDS: -4.47 Total: -105.66 kcal Atomic # 8 Polarization: -28.77 SS G_CDS: -0.80 Total: -29.57 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -71.47 2.46 -69.01 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734632953.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.931 kcal (2) G-P(sol) polarization free energy of solvation -71.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds