Wall clock time and date at job start Tue Mar 31 2020 20:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46807 * 2 1 4 4 C 1.53004 * 109.46951 * 119.99629 * 2 1 3 5 5 C 1.53003 * 109.46951 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.47050 * 300.00184 * 5 4 2 7 7 C 1.53004 * 109.47394 * 60.00087 * 6 5 4 8 8 H 1.08995 * 109.47108 * 179.97438 * 7 6 5 9 9 O 1.42901 * 109.46638 * 59.99823 * 7 6 5 10 10 C 1.42897 * 113.99731 * 90.00682 * 9 7 6 11 11 C 1.50704 * 109.46723 * 179.97438 * 10 9 7 12 12 O 1.21272 * 120.00166 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99854 * 179.72487 * 11 10 9 14 14 C 1.46497 * 120.00069 * 180.27375 * 13 11 10 15 15 C 1.50699 * 109.47262 * 179.97438 * 14 13 11 16 16 C 1.29459 * 117.69568 * 94.73585 * 15 14 13 17 17 C 1.50314 * 123.65838 * 180.58856 * 16 15 14 18 18 N 1.47007 * 109.20103 * 349.50368 * 17 16 15 19 19 C 1.36940 * 121.37355 * 222.72094 * 18 17 16 20 20 H 1.08006 * 120.00053 * 155.99782 * 19 18 17 21 21 C 1.38814 * 120.00128 * 335.99118 * 19 18 17 22 22 N 1.31622 * 119.99618 * 344.51856 * 21 19 18 23 23 Si 1.86798 * 120.00019 * 164.51267 * 21 19 18 24 24 H 1.48500 * 109.46968 * 90.00192 * 23 21 19 25 25 H 1.48493 * 109.47164 * 210.00417 * 23 21 19 26 26 H 1.48497 * 109.47367 * 330.00442 * 23 21 19 27 27 C 1.47338 * 117.25164 * 42.73841 * 18 17 16 28 28 C 1.49971 * 117.69589 * 275.00323 * 15 14 13 29 29 C 1.52999 * 109.47050 * 239.99813 * 2 1 3 30 30 H 1.09000 * 109.46990 * 300.00071 * 1 2 3 31 31 H 1.09000 * 109.47075 * 59.99894 * 1 2 3 32 32 H 1.08998 * 109.47263 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47051 * 59.99975 * 4 2 1 34 34 H 1.08995 * 109.47108 * 300.00181 * 4 2 1 35 35 H 1.09000 * 109.47075 * 180.02562 * 5 4 2 36 36 H 1.08998 * 109.47263 * 60.00105 * 5 4 2 37 37 H 1.09007 * 109.46935 * 300.00058 * 6 5 4 38 38 H 1.09003 * 109.47104 * 180.02562 * 6 5 4 39 39 H 1.08993 * 109.47557 * 59.99619 * 10 9 7 40 40 H 1.08997 * 109.46808 * 299.99121 * 10 9 7 41 41 H 0.97004 * 120.00057 * 0.26688 * 13 11 10 42 42 H 1.08993 * 109.46893 * 299.99549 * 14 13 11 43 43 H 1.09003 * 109.47391 * 60.00008 * 14 13 11 44 44 H 1.07999 * 118.17088 * 0.86480 * 16 15 14 45 45 H 1.08998 * 109.67143 * 229.48413 * 17 16 15 46 46 H 1.09002 * 109.38554 * 109.34528 * 17 16 15 47 47 H 0.97001 * 119.99234 * 180.02562 * 22 21 19 48 48 H 1.09003 * 109.78269 * 178.62177 * 27 18 17 49 49 H 1.09000 * 109.77672 * 57.80903 * 27 18 17 50 50 H 1.09004 * 109.31237 * 281.28895 * 28 15 14 51 51 H 1.08999 * 109.31539 * 40.71133 * 28 15 14 52 52 H 1.09000 * 109.46942 * 60.00211 * 29 2 1 53 53 H 1.08998 * 109.47022 * 300.00068 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7218 1.2490 6 6 4.0795 -1.4434 -0.0002 7 6 3.5695 -0.7222 -1.2495 8 1 3.9328 -1.2361 -2.1394 9 8 4.0464 0.6249 -1.2498 10 6 5.3059 0.7954 -1.9029 11 6 5.7098 2.2461 -1.8441 12 8 4.9898 3.0544 -1.2974 13 7 6.8736 2.6444 -2.3949 14 6 7.2691 4.0536 -2.3326 15 6 8.6003 4.2324 -3.0160 16 6 8.5947 4.5903 -4.2601 17 6 9.8419 4.7944 -5.0739 18 7 11.0101 4.7732 -4.1818 19 6 12.0310 5.6750 -4.3225 20 1 12.6631 5.9110 -3.4791 21 6 12.2536 6.2857 -5.5490 22 7 11.7037 5.7933 -6.6387 23 14 13.3334 7.8065 -5.6528 24 1 14.7429 7.3982 -5.8805 25 1 12.8776 8.6612 -6.7783 26 1 13.2381 8.5690 -4.3822 27 6 11.0375 3.7413 -3.1305 28 6 9.8381 3.9774 -2.2086 29 6 2.0400 -0.7213 -1.2492 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.6766 -1.7488 1.2494 34 1 1.6766 -0.2073 2.1392 35 1 3.9334 -1.2359 2.1388 36 1 3.9338 0.3057 1.2487 37 1 3.7157 -2.4710 0.0001 38 1 5.1695 -1.4442 -0.0002 39 1 5.2205 0.4842 -2.9439 40 1 6.0597 0.1875 -1.4026 41 1 7.4495 1.9979 -2.8325 42 1 6.5181 4.6642 -2.8337 43 1 7.3519 4.3621 -1.2904 44 1 7.6408 4.7556 -4.7388 45 1 9.7924 5.7551 -5.5865 46 1 9.9298 3.9937 -5.8083 47 1 11.8596 6.2199 -7.4958 48 1 11.9627 3.8207 -2.5596 49 1 10.9660 2.7521 -3.5827 50 1 10.0371 4.8394 -1.5717 51 1 9.6857 3.0980 -1.5829 52 1 1.6767 -0.2074 -2.1392 53 1 1.6767 -1.7489 -1.2492 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734632955.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:32 Heat of formation + Delta-G solvation = -85.950855 kcal Electronic energy + Delta-G solvation = -29076.083525 eV Core-core repulsion = 25139.850209 eV Total energy + Delta-G solvation = -3936.233316 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.01071 -40.17333 -39.29307 -37.25735 -36.36108 -34.55292 -33.15512 -32.69788 -31.48848 -31.25988 -29.48064 -27.79313 -27.24233 -25.59338 -24.35806 -23.43643 -22.84471 -22.16916 -21.68248 -20.50324 -19.51474 -18.60002 -17.64775 -17.32782 -17.18156 -16.91487 -16.48394 -16.34284 -15.93215 -15.70819 -15.57359 -15.26737 -15.18073 -14.93444 -14.57642 -14.51210 -14.04967 -13.94990 -13.64446 -13.58075 -13.27081 -13.21238 -13.08014 -12.90184 -12.79528 -12.72664 -12.68864 -12.58270 -12.28871 -12.24510 -12.11088 -11.79670 -11.71171 -11.43783 -11.28430 -11.19486 -10.92644 -10.85460 -10.68283 -10.38828 -10.11573 -9.65555 -8.74831 -7.88969 -5.29662 1.13886 1.46380 1.48497 1.57482 1.58980 2.07589 2.50969 3.10669 3.28529 3.62127 3.73689 3.79565 3.84931 3.90357 3.94273 3.96206 4.22114 4.22451 4.30417 4.32031 4.42145 4.44264 4.53376 4.55899 4.63648 4.65028 4.72244 4.74291 4.83108 4.84022 4.91604 4.91941 4.95035 5.01129 5.08614 5.10556 5.18278 5.21479 5.34342 5.35209 5.37424 5.41210 5.43787 5.45960 5.48334 5.61381 5.65423 5.76506 6.15943 6.21937 6.33819 6.58342 7.13467 7.22988 7.83661 8.36984 9.19615 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.033243 B = 0.001746 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.087808 B =16031.581957 C =16199.490365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 H 0.046 0.954 4 C -0.109 4.109 5 C -0.117 4.117 6 C -0.138 4.138 7 C 0.080 3.920 8 H 0.083 0.917 9 O -0.381 6.381 10 C 0.046 3.954 11 C 0.509 3.491 12 O -0.577 6.577 13 N -0.709 5.709 14 C 0.169 3.831 15 C -0.138 4.138 16 C -0.141 4.141 17 C 0.204 3.796 18 N -0.615 5.615 19 C -0.257 4.257 20 H 0.070 0.930 21 C -0.054 4.054 22 N -0.939 5.939 23 Si 0.967 3.033 24 H -0.284 1.284 25 H -0.294 1.294 26 H -0.273 1.273 27 C 0.139 3.861 28 C -0.084 4.084 29 C -0.108 4.108 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.041 0.959 37 H 0.090 0.910 38 H 0.066 0.934 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.415 0.585 42 H 0.059 0.941 43 H 0.066 0.934 44 H 0.112 0.888 45 H 0.056 0.944 46 H 0.016 0.984 47 H 0.250 0.750 48 H 0.059 0.941 49 H 0.030 0.970 50 H 0.061 0.939 51 H 0.090 0.910 52 H 0.060 0.940 53 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.654 -19.165 12.513 29.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.064 0.936 4 C -0.146 4.146 5 C -0.155 4.155 6 C -0.175 4.175 7 C 0.023 3.977 8 H 0.101 0.899 9 O -0.300 6.300 10 C -0.033 4.033 11 C 0.296 3.704 12 O -0.456 6.456 13 N -0.363 5.363 14 C 0.046 3.954 15 C -0.139 4.139 16 C -0.161 4.161 17 C 0.079 3.921 18 N -0.339 5.339 19 C -0.387 4.387 20 H 0.088 0.912 21 C -0.249 4.249 22 N -0.585 5.585 23 Si 0.795 3.205 24 H -0.210 1.210 25 H -0.220 1.220 26 H -0.198 1.198 27 C 0.013 3.987 28 C -0.123 4.123 29 C -0.145 4.145 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.060 0.940 37 H 0.109 0.891 38 H 0.085 0.915 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.252 0.748 42 H 0.077 0.923 43 H 0.084 0.916 44 H 0.130 0.870 45 H 0.075 0.925 46 H 0.034 0.966 47 H 0.059 0.941 48 H 0.077 0.923 49 H 0.048 0.952 50 H 0.080 0.920 51 H 0.108 0.892 52 H 0.079 0.921 53 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -19.246 -18.372 12.857 29.550 hybrid contribution 1.130 0.899 -0.855 1.678 sum -18.115 -17.473 12.002 27.884 Atomic orbital electron populations 1.21812 0.94627 1.02272 1.01449 1.21026 0.95690 0.99110 0.95238 0.93580 1.21554 0.95203 1.00851 0.97017 1.21414 0.96004 1.00117 0.97943 1.22034 1.00973 0.99975 0.94552 1.22392 0.95075 0.81866 0.98337 0.89935 1.88056 1.35058 1.28847 1.78001 1.22320 0.88709 0.91979 1.00287 1.20955 0.80677 0.91287 0.77515 1.90703 1.53439 1.56378 1.45037 1.45908 1.21591 1.10279 1.58514 1.20193 0.92783 0.82234 1.00205 1.20584 0.94672 1.03812 0.94801 1.22950 0.99323 0.97784 0.96079 1.19409 0.83108 0.99216 0.90340 1.44403 1.19140 1.34538 1.35851 1.19502 1.08673 1.16304 0.94204 0.91248 1.25724 1.01315 1.02966 0.94894 1.70161 1.49487 1.41084 0.97814 0.85281 0.78408 0.79735 0.77075 1.21049 1.22005 1.19801 1.21149 0.96820 0.90846 0.89846 1.20701 0.92692 1.01665 0.97231 1.21696 0.92939 1.01917 0.97949 0.92988 0.93132 0.91438 0.90641 0.92658 0.91502 0.94004 0.89123 0.91493 0.87744 0.87771 0.74818 0.92295 0.91565 0.87028 0.92544 0.96646 0.94127 0.92261 0.95161 0.92031 0.89182 0.92103 0.88555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.19 71.98 0.66 -1.26 16 2 C -0.09 -1.50 2.58 -10.79 -0.03 -1.52 16 3 H 0.05 1.08 7.68 -2.39 -0.02 1.06 16 4 C -0.11 -1.52 5.20 30.60 0.16 -1.36 16 5 C -0.12 -1.79 5.78 30.59 0.18 -1.61 16 6 C -0.14 -1.62 5.63 30.60 0.17 -1.45 16 7 C 0.08 1.11 2.92 30.58 0.09 1.20 16 8 H 0.08 0.78 7.78 -2.39 -0.02 0.77 16 9 O -0.38 -8.10 8.17 -129.94 -1.06 -9.16 16 10 C 0.05 0.79 6.23 71.24 0.44 1.23 16 11 C 0.51 12.90 7.91 87.66 0.69 13.59 16 12 O -0.58 -20.66 16.50 16.03 0.26 -20.40 16 13 N -0.71 -16.02 5.55 -466.80 -2.59 -18.61 16 14 C 0.17 4.68 5.66 85.63 0.48 5.17 16 15 C -0.14 -4.35 5.23 -15.14 -0.08 -4.42 16 16 C -0.14 -5.14 9.47 27.10 0.26 -4.89 16 17 C 0.20 9.69 5.23 85.42 0.45 10.13 16 18 N -0.62 -30.26 3.01 -703.38 -2.12 -32.38 16 19 C -0.26 -13.99 9.71 84.03 0.82 -13.17 16 20 H 0.07 3.67 7.88 -2.91 -0.02 3.65 16 21 C -0.05 -3.01 5.01 84.86 0.43 -2.58 16 22 N -0.94 -54.88 11.08 21.65 0.24 -54.64 16 23 Si 0.97 44.80 29.58 68.60 2.03 46.83 16 24 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 25 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 26 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 27 C 0.14 5.36 6.58 86.25 0.57 5.92 16 28 C -0.08 -2.63 5.95 29.65 0.18 -2.45 16 29 C -0.11 -1.45 4.94 30.58 0.15 -1.30 16 30 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.04 0.89 7.68 -2.39 -0.02 0.87 16 37 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 38 H 0.07 0.74 7.87 -2.39 -0.02 0.72 16 39 H 0.10 1.22 8.08 -2.39 -0.02 1.20 16 40 H 0.10 1.20 7.87 -2.39 -0.02 1.18 16 41 H 0.42 7.25 8.46 -92.70 -0.78 6.47 16 42 H 0.06 1.76 7.79 -2.39 -0.02 1.74 16 43 H 0.07 1.89 8.11 -2.39 -0.02 1.87 16 44 H 0.11 3.66 7.74 -2.91 -0.02 3.64 16 45 H 0.06 3.06 6.41 -2.39 -0.02 3.05 16 46 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 48 H 0.06 2.24 7.96 -2.39 -0.02 2.22 16 49 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 50 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 51 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 52 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 53 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -71.46 413.87 2.46 -69.00 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: 0.08 Total: 18.13 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: 5.61 Total: 1.22 kcal Atomic # 7 Polarization: -101.16 SS G_CDS: -4.47 Total: -105.63 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -0.80 Total: -29.56 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -71.46 2.46 -69.00 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734632955.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.951 kcal (2) G-P(sol) polarization free energy of solvation -71.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds