Wall clock time and date at job start Tue Mar 31 2020 20:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.47482 * 2 1 4 4 N 1.46497 * 109.47289 * 240.00138 * 2 1 3 5 5 C 1.34779 * 120.00287 * 85.00123 * 4 2 1 6 6 O 1.21283 * 119.99541 * 359.97438 * 5 4 2 7 7 C 1.50701 * 120.00131 * 180.02562 * 5 4 2 8 8 C 1.52994 * 109.47016 * 299.99787 * 7 5 4 9 9 C 1.53004 * 109.47254 * 180.02562 * 8 7 5 10 10 C 1.52999 * 109.46705 * 59.99642 * 9 8 7 11 11 C 1.52994 * 109.47557 * 300.00173 * 10 9 8 12 12 C 1.52999 * 109.46630 * 179.97438 * 7 5 4 13 13 C 1.50706 * 109.47163 * 120.00165 * 2 1 3 14 14 O 1.21279 * 119.99813 * 100.50512 * 13 2 1 15 15 N 1.34771 * 119.99773 * 280.50325 * 13 2 1 16 16 C 1.46505 * 120.00222 * 5.07041 * 15 13 2 17 17 C 1.50694 * 109.46828 * 274.53206 * 16 15 13 18 18 H 1.08001 * 120.00354 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99939 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99743 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99929 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47309 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47090 * 119.99924 * 21 19 17 24 24 H 1.48504 * 109.46776 * 239.99627 * 21 19 17 25 25 C 1.46503 * 119.99674 * 185.06240 * 15 13 2 26 26 C 1.53001 * 109.47255 * 270.50248 * 25 15 13 27 27 C 1.53000 * 117.50140 * 243.74926 * 26 25 15 28 28 C 1.53005 * 117.49740 * 175.08715 * 26 25 15 29 29 H 1.09000 * 109.47407 * 292.55459 * 1 2 3 30 30 H 1.09003 * 109.47393 * 52.55431 * 1 2 3 31 31 H 1.09007 * 109.47243 * 172.55613 * 1 2 3 32 32 H 0.97004 * 120.00129 * 264.99946 * 4 2 1 33 33 H 1.08999 * 109.47043 * 60.00189 * 7 5 4 34 34 H 1.09005 * 109.47312 * 299.99734 * 8 7 5 35 35 H 1.08998 * 109.47450 * 59.99818 * 8 7 5 36 36 H 1.08999 * 109.46730 * 300.00356 * 9 8 7 37 37 H 1.08998 * 109.47481 * 179.97438 * 9 8 7 38 38 H 1.09009 * 109.46754 * 180.02562 * 10 9 8 39 39 H 1.09005 * 109.47354 * 60.00813 * 10 9 8 40 40 H 1.08999 * 109.47543 * 300.00305 * 11 10 9 41 41 H 1.09007 * 109.47391 * 180.02562 * 11 10 9 42 42 H 1.08999 * 109.47469 * 299.99437 * 12 7 5 43 43 H 1.09005 * 109.47354 * 60.00476 * 12 7 5 44 44 H 1.08993 * 109.47021 * 154.53307 * 16 15 13 45 45 H 1.09000 * 109.46867 * 34.53041 * 16 15 13 46 46 H 0.97000 * 119.99440 * 179.97438 * 20 19 17 47 47 H 1.08994 * 109.47161 * 30.50488 * 25 15 13 48 48 H 1.09008 * 109.46832 * 150.50641 * 25 15 13 49 49 H 1.08998 * 115.54902 * 29.42486 * 26 25 15 50 50 H 1.09001 * 117.49487 * 0.02562 * 27 26 25 51 51 H 1.09000 * 117.49773 * 145.02636 * 27 26 25 52 52 H 1.08997 * 117.49863 * 214.98394 * 28 26 25 53 53 H 1.08999 * 117.49703 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3571 6 8 1.8582 1.1584 -2.4117 7 6 2.6489 -0.7288 -3.5877 8 6 4.0513 -1.2797 -3.3222 9 6 4.5611 -2.0006 -4.5718 10 6 4.6127 -1.0169 -5.7425 11 6 3.2103 -0.4660 -6.0081 12 6 2.6999 0.2543 -4.7590 13 6 2.0323 -0.7105 1.2305 14 8 2.4150 -1.8588 1.1539 15 7 2.0563 -0.0697 2.4159 16 6 1.4920 1.2773 2.5321 17 6 2.5322 2.2934 2.1368 18 1 3.5151 1.9685 1.8293 19 6 2.2290 3.6381 2.1676 20 7 1.0318 4.0338 2.5416 21 14 3.5182 4.8977 1.6769 22 1 4.7733 4.2000 1.2989 23 1 3.0233 5.6881 0.5212 24 1 3.7829 5.8066 2.8211 25 6 2.6466 -0.7203 3.5883 26 6 1.5705 -1.5235 4.3217 27 6 1.2118 -1.0898 5.7444 28 6 2.0134 -2.3735 5.5144 29 1 -0.3634 0.3942 0.9490 30 1 -0.3634 0.6248 -0.8159 31 1 -0.3634 -1.0191 -0.1331 32 1 2.2490 -1.6318 -1.1526 33 1 1.9760 -1.5505 -3.8326 34 1 4.7242 -0.4579 -3.0774 35 1 4.0146 -1.9801 -2.4878 36 1 3.8882 -2.8223 -4.8171 37 1 5.5604 -2.3927 -4.3828 38 1 4.9755 -1.5306 -6.6329 39 1 5.2856 -0.1952 -5.4973 40 1 2.5375 -1.2877 -6.2533 41 1 3.2470 0.2345 -6.8425 42 1 1.7006 0.6465 -4.9480 43 1 3.3726 1.0764 -4.5144 44 1 1.1841 1.4545 3.5625 45 1 0.6277 1.3671 1.8740 46 1 0.8187 4.9799 2.5637 47 1 3.4451 -1.3898 3.2688 48 1 3.0538 0.0375 4.2578 49 1 0.7670 -1.9132 3.6967 50 1 1.7422 -0.2319 6.1578 51 1 0.1725 -1.1945 6.0556 52 1 1.5009 -3.3222 5.6742 53 1 3.0712 -2.3601 5.7767 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103437519.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:56 Heat of formation + Delta-G solvation = -93.413701 kcal Electronic energy + Delta-G solvation = -30647.443571 eV Core-core repulsion = 26710.886642 eV Total energy + Delta-G solvation = -3936.556929 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.66960 -40.68836 -38.64340 -38.22884 -36.54422 -35.99540 -34.47846 -32.81989 -31.64591 -31.04277 -29.64248 -27.93150 -25.86706 -24.90733 -23.82112 -23.38638 -23.19929 -21.88332 -21.34197 -20.69041 -20.16646 -18.84760 -18.40371 -17.92155 -17.16949 -16.78253 -16.54791 -16.31619 -16.20386 -15.94303 -15.37652 -15.16780 -15.01029 -14.92714 -14.69969 -14.56243 -14.21851 -13.87374 -13.69160 -13.64919 -13.41188 -13.28479 -13.12584 -13.03233 -12.93644 -12.69076 -12.63634 -12.45151 -12.33656 -12.22937 -12.13343 -12.03805 -11.72337 -11.54328 -11.35262 -11.34306 -11.01572 -10.87880 -10.78426 -10.69020 -10.55732 -10.17281 -9.54149 -8.24826 -6.37389 1.33675 1.38250 1.45076 1.49908 1.65912 1.91271 2.33129 2.47675 2.95960 3.06407 3.47328 3.60893 3.74275 3.78810 3.86188 4.02319 4.11150 4.12344 4.23188 4.26924 4.28546 4.31976 4.37233 4.44318 4.55188 4.58324 4.59913 4.66982 4.70803 4.76063 4.80545 4.84866 4.89935 4.97782 5.01866 5.03699 5.12362 5.17784 5.23371 5.25609 5.25711 5.26851 5.28242 5.34457 5.38193 5.41272 5.56807 5.61875 5.78119 6.01235 6.44682 6.53078 6.74872 7.13925 7.25176 7.34570 8.80899 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.009380 B = 0.003792 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2984.396565 B = 7381.659743 C = 9338.817085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.126 3.874 3 H 0.094 0.906 4 N -0.704 5.704 5 C 0.509 3.491 6 O -0.581 6.581 7 C -0.093 4.093 8 C -0.111 4.111 9 C -0.111 4.111 10 C -0.122 4.122 11 C -0.112 4.112 12 C -0.100 4.100 13 C 0.517 3.483 14 O -0.577 6.577 15 N -0.588 5.588 16 C 0.246 3.754 17 C -0.546 4.546 18 H 0.047 0.953 19 C 0.028 3.972 20 N -0.912 5.912 21 Si 0.946 3.054 22 H -0.275 1.275 23 H -0.284 1.284 24 H -0.270 1.270 25 C 0.150 3.850 26 C -0.178 4.178 27 C -0.176 4.176 28 C -0.156 4.156 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.414 0.586 33 H 0.123 0.877 34 H 0.048 0.952 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.051 0.949 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.058 0.942 43 H 0.045 0.955 44 H 0.029 0.971 45 H 0.037 0.963 46 H 0.268 0.732 47 H 0.073 0.927 48 H 0.077 0.923 49 H 0.088 0.912 50 H 0.093 0.907 51 H 0.100 0.900 52 H 0.108 0.892 53 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.833 -14.257 -8.873 17.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.017 3.983 3 H 0.112 0.888 4 N -0.358 5.358 5 C 0.297 3.703 6 O -0.460 6.460 7 C -0.114 4.114 8 C -0.149 4.149 9 C -0.148 4.148 10 C -0.160 4.160 11 C -0.149 4.149 12 C -0.138 4.138 13 C 0.305 3.695 14 O -0.459 6.459 15 N -0.317 5.317 16 C 0.126 3.874 17 C -0.585 4.585 18 H 0.066 0.934 19 C -0.173 4.173 20 N -0.551 5.551 21 Si 0.772 3.228 22 H -0.200 1.200 23 H -0.210 1.210 24 H -0.195 1.195 25 C 0.027 3.973 26 C -0.197 4.197 27 C -0.213 4.213 28 C -0.193 4.193 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.252 0.748 33 H 0.141 0.859 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.070 0.930 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.076 0.924 43 H 0.064 0.936 44 H 0.047 0.953 45 H 0.055 0.945 46 H 0.077 0.923 47 H 0.091 0.909 48 H 0.095 0.905 49 H 0.107 0.893 50 H 0.111 0.889 51 H 0.119 0.881 52 H 0.126 0.874 53 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.722 -13.828 -8.869 16.652 hybrid contribution 0.470 1.109 0.209 1.223 sum 3.191 -12.718 -8.660 15.714 Atomic orbital electron populations 1.22006 0.92217 1.02909 1.03141 1.20650 0.96392 0.97648 0.83562 0.88833 1.45812 1.66966 1.14762 1.08281 1.21527 0.76431 0.86954 0.85342 1.90715 1.51609 1.18031 1.85621 1.21375 0.99389 0.99590 0.91029 1.21558 0.93505 1.00007 0.99870 1.21513 1.02005 0.98116 0.93197 1.21591 0.96699 0.98871 0.98812 1.21522 0.97117 1.00310 0.95984 1.21336 1.01392 0.96986 0.94074 1.20493 0.77881 0.85971 0.85183 1.90552 1.51294 1.17832 1.86267 1.48103 1.57495 1.17691 1.08374 1.19285 0.93673 0.76706 0.97769 1.21636 0.98987 0.91810 1.46063 0.93449 1.25519 0.97058 0.99986 0.94733 1.69984 1.20832 1.16673 1.47627 0.85688 0.79579 0.79421 0.78129 1.19951 1.20965 1.19533 1.20988 0.94477 0.95496 0.86299 1.22547 1.01598 1.04375 0.91208 1.23101 1.01549 0.98971 0.97696 1.23017 1.01235 0.95266 0.99769 0.91185 0.91879 0.90532 0.74835 0.85897 0.93329 0.90938 0.90058 0.90789 0.90101 0.93010 0.90321 0.91127 0.92355 0.93604 0.95300 0.94475 0.92303 0.90895 0.90477 0.89332 0.88876 0.88148 0.87373 0.87818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.19 9.15 71.98 0.66 -4.53 16 2 C 0.13 5.03 2.17 44.24 0.10 5.12 16 3 H 0.09 4.56 6.00 -2.39 -0.01 4.55 16 4 N -0.70 -23.67 4.93 -446.10 -2.20 -25.87 16 5 C 0.51 17.26 7.12 87.66 0.62 17.88 16 6 O -0.58 -25.27 15.64 -3.04 -0.05 -25.32 16 7 C -0.09 -2.18 2.53 -11.54 -0.03 -2.21 16 8 C -0.11 -2.33 5.10 30.59 0.16 -2.17 16 9 C -0.11 -1.65 5.92 30.60 0.18 -1.46 16 10 C -0.12 -1.81 5.92 30.59 0.18 -1.63 16 11 C -0.11 -1.81 5.92 30.58 0.18 -1.62 16 12 C -0.10 -2.36 4.49 30.58 0.14 -2.22 16 13 C 0.52 21.19 6.88 87.66 0.60 21.79 16 14 O -0.58 -23.77 15.56 -3.03 -0.05 -23.82 16 15 N -0.59 -24.55 2.47 -826.15 -2.04 -26.59 16 16 C 0.25 11.81 4.81 85.63 0.41 12.22 16 17 C -0.55 -29.21 8.24 25.60 0.21 -28.99 16 18 H 0.05 2.61 7.81 -2.91 -0.02 2.59 16 19 C 0.03 1.53 5.46 84.65 0.46 2.00 16 20 N -0.91 -51.24 13.29 21.45 0.28 -50.96 16 21 Si 0.95 44.18 29.54 68.60 2.03 46.21 16 22 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 23 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 24 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 25 C 0.15 5.41 5.62 86.38 0.49 5.90 16 26 C -0.18 -5.47 6.01 -10.79 -0.06 -5.54 16 27 C -0.18 -4.63 10.18 30.62 0.31 -4.32 16 28 C -0.16 -3.65 10.26 30.62 0.31 -3.34 16 29 H 0.07 2.64 5.92 -2.39 -0.01 2.63 16 30 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 32 H 0.41 12.16 7.15 -92.71 -0.66 11.49 16 33 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 35 H 0.07 1.47 7.56 -2.39 -0.02 1.45 16 36 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.07 0.99 8.14 -2.39 -0.02 0.98 16 38 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 39 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 40 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 42 H 0.06 1.49 8.10 -2.39 -0.02 1.47 16 43 H 0.05 1.29 8.10 -2.38 -0.02 1.27 16 44 H 0.03 1.45 8.04 -2.39 -0.02 1.43 16 45 H 0.04 1.86 4.80 -2.39 -0.01 1.85 16 46 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 47 H 0.07 2.62 7.51 -2.39 -0.02 2.60 16 48 H 0.08 2.79 7.80 -2.38 -0.02 2.77 16 49 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 50 H 0.09 2.50 8.03 -2.39 -0.02 2.48 16 51 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 52 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 53 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -65.12 417.66 3.12 -62.00 By element: Atomic # 1 Polarization: 37.27 SS G_CDS: 0.22 Total: 37.49 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: 4.92 Total: 6.86 kcal Atomic # 7 Polarization: -99.47 SS G_CDS: -3.95 Total: -103.42 kcal Atomic # 8 Polarization: -49.04 SS G_CDS: -0.09 Total: -49.14 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -65.12 3.12 -62.00 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103437519.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.418 kcal (2) G-P(sol) polarization free energy of solvation -65.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds