Wall clock time and date at job start Tue Mar 31 2020 20:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46215 * 2 1 4 4 N 1.46497 * 109.47274 * 119.99805 * 2 1 3 5 5 C 1.34766 * 120.00516 * 275.00192 * 4 2 1 6 6 O 1.21287 * 119.99894 * 0.02562 * 5 4 2 7 7 C 1.50700 * 120.00342 * 179.72640 * 5 4 2 8 8 C 1.53005 * 109.46912 * 300.27655 * 7 5 4 9 9 C 1.52997 * 109.46740 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.47606 * 59.99708 * 9 8 7 11 11 C 1.52991 * 109.47327 * 299.99912 * 10 9 8 12 12 C 1.53002 * 109.47472 * 180.27718 * 7 5 4 13 13 C 1.50696 * 109.46835 * 240.00407 * 2 1 3 14 14 O 1.21277 * 119.99858 * 256.75879 * 13 2 1 15 15 N 1.34779 * 119.99999 * 76.76702 * 13 2 1 16 16 C 1.46498 * 119.99967 * 4.92606 * 15 13 2 17 17 C 1.50697 * 109.47147 * 95.45517 * 16 15 13 18 18 H 1.08013 * 119.99663 * 359.97438 * 17 16 15 19 19 C 1.37873 * 120.00278 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99746 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99904 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47110 * 60.00558 * 21 19 17 23 23 H 1.48507 * 109.46936 * 180.02562 * 21 19 17 24 24 H 1.48492 * 109.47201 * 299.99881 * 21 19 17 25 25 C 1.46502 * 119.99627 * 184.93455 * 15 13 2 26 26 C 1.53003 * 109.47511 * 92.49363 * 25 15 13 27 27 C 1.52995 * 117.49816 * 243.74641 * 26 25 15 28 28 C 1.52989 * 117.49883 * 175.08303 * 26 25 15 29 29 H 1.09005 * 109.47368 * 301.22749 * 1 2 3 30 30 H 1.08993 * 109.47716 * 61.22982 * 1 2 3 31 31 H 1.09002 * 109.46804 * 181.23186 * 1 2 3 32 32 H 0.97001 * 119.99270 * 95.00235 * 4 2 1 33 33 H 1.09001 * 109.46946 * 60.27307 * 7 5 4 34 34 H 1.09001 * 109.47031 * 299.99600 * 8 7 5 35 35 H 1.08991 * 109.47017 * 60.00128 * 8 7 5 36 36 H 1.09002 * 109.47450 * 299.99871 * 9 8 7 37 37 H 1.09004 * 109.46957 * 180.02562 * 9 8 7 38 38 H 1.08999 * 109.47284 * 179.97438 * 10 9 8 39 39 H 1.09001 * 109.47042 * 59.99898 * 10 9 8 40 40 H 1.08996 * 109.47516 * 299.99967 * 11 10 9 41 41 H 1.08995 * 109.47741 * 179.97438 * 11 10 9 42 42 H 1.09004 * 109.46930 * 300.00105 * 12 7 5 43 43 H 1.09002 * 109.46912 * 59.99583 * 12 7 5 44 44 H 1.09006 * 109.46964 * 215.44947 * 16 15 13 45 45 H 1.08997 * 109.47590 * 335.44957 * 16 15 13 46 46 H 0.96999 * 119.99500 * 179.97438 * 20 19 17 47 47 H 1.09009 * 109.46615 * 212.49483 * 25 15 13 48 48 H 1.09001 * 109.47263 * 332.49141 * 25 15 13 49 49 H 1.09001 * 115.54590 * 29.41204 * 26 25 15 50 50 H 1.08997 * 117.49907 * 359.97438 * 27 26 25 51 51 H 1.08998 * 117.49609 * 145.01989 * 27 26 25 52 52 H 1.08999 * 117.50105 * 214.97649 * 28 26 25 53 53 H 1.09003 * 117.50167 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1471 -0.0183 2.3571 6 8 1.8582 1.1584 2.4117 7 6 2.6436 -0.7302 3.5890 8 6 1.6978 -1.8844 3.9271 9 6 2.2015 -2.6067 5.1782 10 6 2.2473 -1.6247 6.3506 11 6 3.1931 -0.4706 6.0125 12 6 2.6898 0.2515 4.7617 13 6 2.0323 -0.7103 -1.2305 14 8 2.4612 -1.8415 -1.1451 15 7 2.0050 -0.0884 -2.4259 16 6 1.5889 1.3135 -2.5130 17 6 2.8066 2.2010 -2.4941 18 1 3.7920 1.7644 -2.4239 19 6 2.6629 3.5703 -2.5666 20 7 1.4631 4.1019 -2.6526 21 14 4.1725 4.6705 -2.5425 22 1 5.0445 4.3397 -3.6981 23 1 3.7507 6.0916 -2.6308 24 1 4.9221 4.4548 -1.2789 25 6 2.3912 -0.8146 -3.6383 26 6 1.1478 -1.4331 -4.2804 27 6 1.0774 -2.9595 -4.3571 28 6 1.3248 -2.1395 -5.6258 29 1 -0.3634 0.5328 0.8788 30 1 -0.3634 0.4946 -0.9007 31 1 -0.3633 -1.0275 0.0221 32 1 2.2491 -1.6317 1.1525 33 1 3.6437 -1.1223 3.4038 34 1 0.6978 -1.4922 4.1123 35 1 1.6649 -2.5837 3.0918 36 1 3.2017 -2.9988 4.9935 37 1 1.5280 -3.4292 5.4189 38 1 2.6058 -2.1394 7.2420 39 1 1.2472 -1.2326 6.5354 40 1 4.1932 -0.8626 5.8278 41 1 3.2254 0.2293 6.8475 42 1 3.3636 1.0738 4.5208 43 1 1.6898 0.6436 4.9468 44 1 1.0380 1.4721 -3.4401 45 1 0.9493 1.5561 -1.6644 46 1 1.3620 5.0653 -2.7031 47 1 2.8585 -0.1250 -4.3414 48 1 3.0973 -1.6037 -3.3798 49 1 0.2152 -0.8939 -4.1138 50 1 1.9171 -3.5231 -3.9505 51 1 0.0984 -3.4245 -4.2415 52 1 0.5085 -2.0657 -6.3444 53 1 2.3271 -2.1641 -6.0534 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103437520.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:01 Heat of formation + Delta-G solvation = -94.239041 kcal Electronic energy + Delta-G solvation = -30512.452302 eV Core-core repulsion = 26575.859583 eV Total energy + Delta-G solvation = -3936.592719 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.68405 -40.69173 -38.64049 -38.21139 -36.55664 -36.01965 -34.49162 -32.82371 -31.63331 -31.04908 -29.62383 -28.02319 -25.77628 -24.91008 -23.96362 -23.37563 -23.17340 -21.78255 -21.36750 -20.67537 -20.17123 -18.79499 -18.52860 -17.92532 -17.19106 -16.87539 -16.44986 -16.29491 -16.18624 -15.93894 -15.46951 -15.11690 -15.00682 -14.99396 -14.60856 -14.54005 -14.30831 -13.94870 -13.67032 -13.51851 -13.42475 -13.23730 -13.17991 -13.06281 -12.89604 -12.66339 -12.61475 -12.53482 -12.33432 -12.22589 -12.09574 -12.02745 -11.78360 -11.54469 -11.34438 -11.31873 -11.00782 -10.89402 -10.82777 -10.68090 -10.56494 -10.19458 -9.54277 -8.24843 -6.39074 1.36948 1.39431 1.45239 1.51235 1.64174 1.87703 2.32906 2.46600 2.94709 3.06333 3.47711 3.60347 3.74937 3.79734 3.84324 4.02939 4.07500 4.14348 4.16312 4.25761 4.29322 4.33460 4.39021 4.44527 4.56184 4.59647 4.60784 4.66268 4.72451 4.76202 4.79065 4.82957 4.88779 4.98151 5.02349 5.02932 5.13594 5.16281 5.18772 5.26405 5.27074 5.27908 5.29103 5.32517 5.38052 5.41699 5.57472 5.60169 5.76447 6.00298 6.46820 6.51240 6.72827 7.13067 7.23103 7.33519 8.80712 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.009159 B = 0.003688 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3056.332107 B = 7591.061497 C = 9943.836088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.128 3.872 3 H 0.085 0.915 4 N -0.704 5.704 5 C 0.511 3.489 6 O -0.581 6.581 7 C -0.096 4.096 8 C -0.107 4.107 9 C -0.113 4.113 10 C -0.120 4.120 11 C -0.114 4.114 12 C -0.099 4.099 13 C 0.517 3.483 14 O -0.576 6.576 15 N -0.587 5.587 16 C 0.247 3.753 17 C -0.555 4.555 18 H 0.050 0.950 19 C 0.024 3.976 20 N -0.915 5.915 21 Si 0.952 3.048 22 H -0.266 1.266 23 H -0.278 1.278 24 H -0.280 1.280 25 C 0.149 3.851 26 C -0.183 4.183 27 C -0.168 4.168 28 C -0.158 4.158 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.414 0.586 33 H 0.112 0.888 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.049 0.951 43 H 0.054 0.946 44 H 0.025 0.975 45 H 0.038 0.962 46 H 0.268 0.732 47 H 0.075 0.925 48 H 0.074 0.926 49 H 0.093 0.907 50 H 0.091 0.909 51 H 0.100 0.900 52 H 0.108 0.892 53 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.417 -15.199 10.058 18.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.020 3.980 3 H 0.103 0.897 4 N -0.357 5.357 5 C 0.299 3.701 6 O -0.460 6.460 7 C -0.117 4.117 8 C -0.145 4.145 9 C -0.151 4.151 10 C -0.158 4.158 11 C -0.151 4.151 12 C -0.137 4.137 13 C 0.305 3.695 14 O -0.458 6.458 15 N -0.316 5.316 16 C 0.127 3.873 17 C -0.593 4.593 18 H 0.068 0.932 19 C -0.177 4.177 20 N -0.554 5.554 21 Si 0.778 3.222 22 H -0.190 1.190 23 H -0.203 1.203 24 H -0.205 1.205 25 C 0.026 3.974 26 C -0.203 4.203 27 C -0.205 4.205 28 C -0.196 4.196 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.252 0.748 33 H 0.130 0.870 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.043 0.957 45 H 0.055 0.945 46 H 0.077 0.923 47 H 0.093 0.907 48 H 0.093 0.907 49 H 0.111 0.889 50 H 0.109 0.891 51 H 0.119 0.881 52 H 0.127 0.873 53 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.501 -14.754 10.076 17.873 hybrid contribution 0.684 1.059 -0.413 1.327 sum 0.184 -13.695 9.663 16.762 Atomic orbital electron populations 1.21961 0.91766 1.03130 1.03149 1.20586 0.96559 0.97131 0.83765 0.89686 1.45792 1.66980 1.14807 1.08165 1.21503 0.76514 0.86865 0.85238 1.90712 1.51570 1.18061 1.85703 1.21388 1.02058 0.97374 0.90864 1.21545 0.97884 0.95320 0.99766 1.21526 1.02320 0.97852 0.93352 1.21573 0.99625 0.96128 0.98456 1.21527 0.99697 0.97739 0.96168 1.21326 1.01581 0.96824 0.94000 1.20481 0.77927 0.85896 0.85190 1.90540 1.49366 1.19614 1.86294 1.48057 1.64084 1.13250 1.06187 1.19222 0.94924 0.75367 0.97828 1.21642 0.93525 0.91947 1.52187 0.93177 1.25612 0.98655 0.99195 0.94233 1.69982 1.23078 1.12513 1.49784 0.85692 0.79858 0.77984 0.78697 1.19030 1.20304 1.20549 1.20952 0.95351 0.95623 0.85469 1.22590 0.99345 0.95850 1.02489 1.23019 1.03288 0.92398 1.01763 1.23029 1.03893 1.02425 0.90205 0.91615 0.91268 0.90468 0.74751 0.87046 0.92127 0.90602 0.90790 0.90281 0.90323 0.92352 0.91011 0.91130 0.93177 0.92715 0.95715 0.94461 0.92256 0.90710 0.90742 0.88889 0.89087 0.88125 0.87320 0.87938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.87 9.15 71.98 0.66 -4.21 16 2 C 0.13 5.01 2.12 44.25 0.09 5.10 16 3 H 0.09 4.07 6.52 -2.39 -0.02 4.05 16 4 N -0.70 -23.21 4.92 -446.11 -2.19 -25.41 16 5 C 0.51 17.03 7.12 87.66 0.62 17.65 16 6 O -0.58 -24.87 15.65 -3.05 -0.05 -24.92 16 7 C -0.10 -2.23 2.53 -11.54 -0.03 -2.26 16 8 C -0.11 -1.93 5.10 30.60 0.16 -1.78 16 9 C -0.11 -1.49 5.92 30.59 0.18 -1.31 16 10 C -0.12 -1.62 5.92 30.59 0.18 -1.44 16 11 C -0.11 -1.85 5.92 30.57 0.18 -1.67 16 12 C -0.10 -2.33 4.49 30.58 0.14 -2.19 16 13 C 0.52 21.04 6.94 87.66 0.61 21.65 16 14 O -0.58 -23.56 15.40 -3.02 -0.05 -23.61 16 15 N -0.59 -24.58 2.46 -826.14 -2.03 -26.61 16 16 C 0.25 11.99 4.70 85.63 0.40 12.39 16 17 C -0.55 -29.94 9.38 25.60 0.24 -29.70 16 18 H 0.05 2.75 7.81 -2.90 -0.02 2.72 16 19 C 0.02 1.31 5.46 84.65 0.46 1.78 16 20 N -0.91 -51.91 13.29 21.45 0.28 -51.62 16 21 Si 0.95 43.71 29.54 68.60 2.03 45.73 16 22 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 23 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 24 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 25 C 0.15 5.43 5.77 86.38 0.50 5.93 16 26 C -0.18 -5.63 6.01 -10.80 -0.06 -5.70 16 27 C -0.17 -4.28 10.18 30.62 0.31 -3.96 16 28 C -0.16 -3.74 10.25 30.62 0.31 -3.43 16 29 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 30 H 0.07 2.49 6.52 -2.39 -0.02 2.48 16 31 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.41 11.98 7.13 -92.71 -0.66 11.32 16 33 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.08 1.26 7.55 -2.39 -0.02 1.25 16 36 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 38 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.05 1.35 8.10 -2.38 -0.02 1.33 16 43 H 0.05 1.43 8.10 -2.39 -0.02 1.41 16 44 H 0.02 1.26 8.11 -2.38 -0.02 1.24 16 45 H 0.04 1.89 4.65 -2.39 -0.01 1.88 16 46 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 47 H 0.07 2.81 8.09 -2.38 -0.02 2.79 16 48 H 0.07 2.70 7.02 -2.39 -0.02 2.69 16 49 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 50 H 0.09 2.39 8.03 -2.39 -0.02 2.37 16 51 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 52 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 53 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -65.33 419.48 3.17 -62.16 By element: Atomic # 1 Polarization: 37.21 SS G_CDS: 0.22 Total: 37.43 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: 4.96 Total: 6.85 kcal Atomic # 7 Polarization: -99.70 SS G_CDS: -3.94 Total: -103.64 kcal Atomic # 8 Polarization: -48.44 SS G_CDS: -0.09 Total: -48.53 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -65.33 3.17 -62.16 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103437520.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.077 kcal (2) G-P(sol) polarization free energy of solvation -65.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds