Wall clock time and date at job start Tue Mar 31 2020 19:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47188 * 2 1 4 4 C 1.53000 * 109.47316 * 120.00499 * 2 1 3 5 5 C 1.50694 * 109.47290 * 184.99851 * 4 2 1 6 6 O 1.21293 * 119.99898 * 359.97438 * 5 4 2 7 7 N 1.34774 * 120.00090 * 180.27047 * 5 4 2 8 8 C 1.37103 * 120.00408 * 179.72241 * 7 5 4 9 9 H 1.07994 * 120.00222 * 222.80910 * 8 7 5 10 10 C 1.38951 * 119.99443 * 42.80660 * 8 7 5 11 11 N 1.31410 * 120.00110 * 19.10964 * 10 8 7 12 12 Si 1.86800 * 119.99683 * 199.11169 * 10 8 7 13 13 H 1.48497 * 109.47253 * 59.99765 * 12 10 8 14 14 H 1.48499 * 109.46870 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47131 * 299.99642 * 12 10 8 16 16 C 1.46503 * 120.00065 * 359.72854 * 7 5 4 17 17 C 1.54268 * 110.03320 * 239.51866 * 16 7 5 18 18 C 1.54965 * 104.15862 * 217.13416 * 17 16 7 19 19 C 1.54885 * 102.77964 * 37.89015 * 18 17 16 20 20 C 1.53875 * 110.03477 * 122.29928 * 16 7 5 21 21 N 1.46505 * 109.46959 * 240.00187 * 2 1 3 22 22 C 1.34775 * 120.00201 * 85.00150 * 21 2 1 23 23 O 1.21286 * 119.99517 * 0.02562 * 22 21 2 24 24 C 1.50695 * 120.00309 * 180.02562 * 22 21 2 25 25 C 1.54273 * 110.02929 * 297.90769 * 24 22 21 26 26 C 1.54964 * 104.15579 * 217.13489 * 25 24 22 27 27 C 1.54895 * 102.77919 * 37.88976 * 26 25 24 28 28 C 1.53877 * 110.03249 * 180.69161 * 24 22 21 29 29 H 1.08998 * 109.47188 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46682 * 299.99620 * 1 2 3 31 31 H 1.08996 * 109.47256 * 59.99968 * 1 2 3 32 32 H 1.08996 * 109.47201 * 64.99321 * 4 2 1 33 33 H 1.09005 * 109.47017 * 304.99949 * 4 2 1 34 34 H 0.96999 * 119.99694 * 174.71285 * 11 10 8 35 35 H 1.09000 * 110.01463 * 0.90793 * 16 7 5 36 36 H 1.09001 * 110.48354 * 335.78152 * 17 16 7 37 37 H 1.08999 * 110.48486 * 98.42400 * 17 16 7 38 38 H 1.08997 * 110.72334 * 279.57081 * 18 17 16 39 39 H 1.09004 * 110.92086 * 156.29775 * 18 17 16 40 40 H 1.09000 * 110.48696 * 203.40660 * 19 18 17 41 41 H 1.08999 * 110.60258 * 80.81284 * 19 18 17 42 42 H 1.09002 * 110.03509 * 238.57104 * 20 16 7 43 43 H 1.08997 * 110.03012 * 359.95544 * 20 16 7 44 44 H 0.97004 * 119.99927 * 264.99799 * 21 2 1 45 45 H 1.08995 * 110.01770 * 59.29358 * 24 22 21 46 46 H 1.09001 * 110.48375 * 335.78048 * 25 24 22 47 47 H 1.08997 * 110.48534 * 98.42847 * 25 24 22 48 48 H 1.08993 * 110.72388 * 279.57118 * 26 25 24 49 49 H 1.09004 * 110.92362 * 156.29540 * 26 25 24 50 50 H 1.09005 * 110.48368 * 203.40369 * 27 26 25 51 51 H 1.09001 * 110.60077 * 80.81614 * 27 26 25 52 52 H 1.09004 * 110.03044 * 238.56669 * 28 24 22 53 53 H 1.08993 * 110.03116 * 359.97438 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 1.2492 5 6 3.5419 -0.6150 1.3126 6 8 4.1451 -0.0212 0.4439 7 7 4.2154 -1.1850 2.3315 8 6 5.5822 -1.0932 2.3862 9 1 6.1711 -1.9570 2.6570 10 6 6.2098 0.1115 2.0933 11 7 5.5282 1.2342 2.1332 12 14 8.0225 0.1348 1.6429 13 1 8.2410 -0.6887 0.4266 14 1 8.4488 1.5324 1.3782 15 1 8.8190 -0.4208 2.7664 16 6 3.4869 -1.9027 3.3805 17 6 3.7619 -1.2545 4.7531 18 6 3.8290 -2.4538 5.7321 19 6 4.5505 -3.5392 4.8953 20 6 3.9876 -3.3549 3.4708 21 7 2.0183 -0.6906 -1.1962 22 6 2.1471 -0.0182 -2.3572 23 8 1.8591 1.1587 -2.4114 24 6 2.6488 -0.7287 -3.5878 25 6 4.0835 -1.2445 -3.3521 26 6 4.7875 -1.0440 -4.7180 27 6 4.1994 0.3010 -5.2124 28 6 2.7222 0.2532 -4.7702 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.7516 -1.7716 1.2055 33 1 1.6054 -0.2619 2.1370 34 1 5.9818 2.0818 2.0043 35 1 2.4178 -1.8889 3.1685 36 1 4.7118 -0.7200 4.7390 37 1 2.9489 -0.5823 5.0272 38 1 2.8272 -2.7821 6.0091 39 1 4.4098 -2.2003 6.6190 40 1 4.3128 -4.5334 5.2737 41 1 5.6283 -3.3765 4.9036 42 1 3.1614 -4.0459 3.3035 43 1 4.7721 -3.5259 2.7336 44 1 2.2490 -1.6318 -1.1527 45 1 1.9887 -1.5605 -3.8336 46 1 4.5778 -0.6570 -2.5784 47 1 4.0696 -2.3000 -3.0806 48 1 4.5346 -1.8518 -5.4045 49 1 5.8677 -0.9701 -4.5920 50 1 4.2706 0.3725 -6.2977 51 1 4.7116 1.1399 -4.7412 52 1 2.0984 -0.1025 -5.5903 53 1 2.3945 1.2435 -4.4541 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128224102.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:09 Heat of formation + Delta-G solvation = -109.474824 kcal Electronic energy + Delta-G solvation = -31510.309765 eV Core-core repulsion = 27573.056373 eV Total energy + Delta-G solvation = -3937.253392 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.25458 -40.44179 -38.56147 -37.94597 -36.54420 -34.97966 -33.53762 -32.60253 -29.92682 -29.53533 -29.39034 -29.08954 -28.27345 -26.18124 -23.80866 -22.15662 -21.59158 -21.35323 -21.28543 -20.82039 -20.30436 -18.41519 -18.11463 -17.56858 -17.24325 -16.66595 -16.59344 -16.18725 -15.93095 -15.68616 -15.41007 -15.21102 -14.84527 -14.63986 -14.44573 -14.25740 -14.07299 -13.65539 -13.47967 -13.19438 -13.10866 -12.87146 -12.71623 -12.62842 -12.50668 -12.37031 -12.22910 -12.17082 -12.07497 -12.04513 -11.97263 -11.88274 -11.79104 -11.73849 -11.68454 -11.44014 -11.32035 -11.21738 -10.68904 -10.64278 -9.96772 -9.78247 -8.91219 -8.13288 -5.84119 1.32855 1.41128 1.43109 1.77205 2.30977 2.38312 2.62096 3.21420 3.31552 3.53998 3.66771 3.80867 3.89260 3.94926 3.98327 4.05261 4.28264 4.33906 4.34611 4.44501 4.51856 4.54165 4.59511 4.65371 4.67601 4.71731 4.74323 4.76104 4.76539 4.86012 4.88953 4.93818 4.96619 4.98865 5.02835 5.12337 5.18100 5.20018 5.22798 5.24832 5.32325 5.34477 5.38880 5.44470 5.48782 5.62419 5.63247 5.70332 5.73017 6.29848 6.69566 7.15840 7.37424 7.41652 7.87241 8.54462 8.95567 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.011036 B = 0.004251 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.531700 B = 6584.438886 C = 7914.218874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.164 3.836 3 H 0.034 0.966 4 C -0.130 4.130 5 C 0.458 3.542 6 O -0.573 6.573 7 N -0.463 5.463 8 C -0.332 4.332 9 H 0.074 0.926 10 C 0.025 3.975 11 N -0.869 5.869 12 Si 0.951 3.049 13 H -0.282 1.282 14 H -0.299 1.299 15 H -0.259 1.259 16 C 0.122 3.878 17 C -0.128 4.128 18 C -0.111 4.111 19 C -0.115 4.115 20 C -0.125 4.125 21 N -0.696 5.696 22 C 0.514 3.486 23 O -0.596 6.596 24 C -0.105 4.105 25 C -0.114 4.114 26 C -0.116 4.116 27 C -0.125 4.125 28 C -0.117 4.117 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.043 0.957 32 H 0.116 0.884 33 H 0.099 0.901 34 H 0.250 0.750 35 H 0.093 0.907 36 H 0.042 0.958 37 H 0.055 0.945 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.084 0.916 41 H 0.044 0.956 42 H 0.086 0.914 43 H 0.047 0.953 44 H 0.405 0.595 45 H 0.131 0.869 46 H 0.028 0.972 47 H 0.090 0.910 48 H 0.099 0.901 49 H 0.061 0.939 50 H 0.090 0.910 51 H 0.036 0.964 52 H 0.095 0.905 53 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.656 -12.773 -3.892 16.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.058 3.942 3 H 0.052 0.948 4 C -0.171 4.171 5 C 0.246 3.754 6 O -0.453 6.453 7 N -0.185 5.185 8 C -0.461 4.461 9 H 0.092 0.908 10 C -0.180 4.180 11 N -0.505 5.505 12 Si 0.779 3.221 13 H -0.208 1.208 14 H -0.225 1.225 15 H -0.184 1.184 16 C 0.018 3.982 17 C -0.166 4.166 18 C -0.148 4.148 19 C -0.152 4.152 20 C -0.163 4.163 21 N -0.345 5.345 22 C 0.302 3.698 23 O -0.477 6.477 24 C -0.126 4.126 25 C -0.152 4.152 26 C -0.153 4.153 27 C -0.162 4.162 28 C -0.155 4.155 29 H 0.104 0.896 30 H 0.095 0.905 31 H 0.063 0.937 32 H 0.134 0.866 33 H 0.117 0.883 34 H 0.059 0.941 35 H 0.111 0.889 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.105 0.895 39 H 0.082 0.918 40 H 0.103 0.897 41 H 0.063 0.937 42 H 0.104 0.896 43 H 0.066 0.934 44 H 0.241 0.759 45 H 0.148 0.852 46 H 0.047 0.953 47 H 0.108 0.892 48 H 0.117 0.883 49 H 0.079 0.921 50 H 0.109 0.891 51 H 0.055 0.945 52 H 0.113 0.887 53 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.553 -11.459 -4.421 15.560 hybrid contribution 1.599 0.786 0.184 1.791 sum -7.954 -10.673 -4.238 13.969 Atomic orbital electron populations 1.22057 0.92584 1.03540 1.02216 1.20499 0.94440 0.95500 0.83751 0.94790 1.21911 0.93243 1.03296 0.98639 1.20731 0.89700 0.82492 0.82471 1.90547 1.70783 1.43447 1.40556 1.43643 1.05195 1.50306 1.19376 1.18856 0.82171 0.95041 1.49994 0.90794 1.25816 1.01201 0.95030 0.95996 1.69934 1.37196 0.97422 1.45955 0.85648 0.81252 0.76250 0.78993 1.20824 1.22543 1.18398 1.22013 0.95990 0.92155 0.88089 1.22600 1.00771 0.98041 0.95202 1.22411 1.01189 0.94331 0.96904 1.22251 0.99082 0.99307 0.94603 1.22412 1.00782 0.95582 0.97565 1.45721 1.66073 1.13837 1.08899 1.21121 0.75892 0.86812 0.85985 1.90594 1.52963 1.18213 1.85945 1.22000 0.98652 0.99751 0.92151 1.22321 0.93241 1.01420 0.98195 1.22503 0.99319 0.97914 0.95577 1.22365 0.95062 0.97271 1.01525 1.22145 0.97671 0.99242 0.96410 0.89603 0.90509 0.93748 0.86641 0.88306 0.94068 0.88880 0.93911 0.92654 0.89472 0.91845 0.89702 0.93740 0.89552 0.93390 0.75941 0.85151 0.95274 0.89165 0.88270 0.92056 0.89116 0.94531 0.88693 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.83 9.48 71.98 0.68 -3.15 16 2 C 0.16 5.81 2.14 44.99 0.10 5.90 16 3 H 0.03 1.62 7.39 -2.39 -0.02 1.60 16 4 C -0.13 -4.41 3.56 29.85 0.11 -4.31 16 5 C 0.46 21.73 6.83 87.66 0.60 22.33 16 6 O -0.57 -33.16 13.00 -3.07 -0.04 -33.20 16 7 N -0.46 -21.45 2.46 -609.38 -1.50 -22.95 16 8 C -0.33 -17.64 7.45 84.04 0.63 -17.01 16 9 H 0.07 3.84 7.09 -2.91 -0.02 3.82 16 10 C 0.03 1.44 4.35 84.93 0.37 1.81 16 11 N -0.87 -53.62 11.67 21.66 0.25 -53.37 16 12 Si 0.95 46.82 29.60 68.60 2.03 48.85 16 13 H -0.28 -13.99 7.11 99.48 0.71 -13.28 16 14 H -0.30 -15.08 7.11 99.48 0.71 -14.37 16 15 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 16 C 0.12 4.23 3.20 45.72 0.15 4.38 16 17 C -0.13 -4.47 6.42 31.70 0.20 -4.26 16 18 C -0.11 -2.85 6.91 31.91 0.22 -2.63 16 19 C -0.11 -3.01 6.83 31.67 0.22 -2.79 16 20 C -0.13 -3.67 6.19 31.32 0.19 -3.48 16 21 N -0.70 -23.39 4.15 -442.53 -1.84 -25.23 16 22 C 0.51 18.94 6.96 87.66 0.61 19.55 16 23 O -0.60 -27.40 14.87 -3.05 -0.05 -27.44 16 24 C -0.10 -2.87 3.29 -10.81 -0.04 -2.90 16 25 C -0.11 -3.27 6.30 31.70 0.20 -3.07 16 26 C -0.12 -2.73 6.91 31.91 0.22 -2.51 16 27 C -0.12 -3.16 6.83 31.67 0.22 -2.94 16 28 C -0.12 -3.13 6.40 31.32 0.20 -2.93 16 29 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.04 1.29 8.14 -2.39 -0.02 1.28 16 32 H 0.12 2.95 7.77 -2.39 -0.02 2.94 16 33 H 0.10 3.12 7.81 -2.38 -0.02 3.10 16 34 H 0.25 15.40 8.32 -92.71 -0.77 14.62 16 35 H 0.09 2.70 5.82 -2.39 -0.01 2.68 16 36 H 0.04 1.91 7.10 -2.39 -0.02 1.89 16 37 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.05 1.68 6.86 -2.39 -0.02 1.66 16 44 H 0.41 11.50 8.59 -92.70 -0.80 10.70 16 45 H 0.13 2.54 8.14 -2.39 -0.02 2.52 16 46 H 0.03 1.15 7.85 -2.39 -0.02 1.13 16 47 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 48 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 49 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 50 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 51 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 52 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 53 H 0.05 1.87 6.39 -2.39 -0.02 1.86 16 Total: -1.00 -80.45 408.40 3.82 -76.63 By element: Atomic # 1 Polarization: 34.63 SS G_CDS: 0.09 Total: 34.72 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: 4.87 Total: 1.99 kcal Atomic # 7 Polarization: -98.46 SS G_CDS: -3.08 Total: -101.55 kcal Atomic # 8 Polarization: -60.55 SS G_CDS: -0.09 Total: -60.64 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -80.45 3.82 -76.63 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128224102.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.843 kcal (2) G-P(sol) polarization free energy of solvation -80.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds