Wall clock time and date at job start Tue Mar 31 2020 19:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.47185 * 2 1 4 4 C 1.52999 * 109.47663 * 240.00499 * 2 1 3 5 5 C 1.50700 * 109.47666 * 175.00190 * 4 2 1 6 6 O 1.21298 * 119.99454 * 359.97438 * 5 4 2 7 7 N 1.34769 * 120.00283 * 179.97438 * 5 4 2 8 8 C 1.37103 * 120.00321 * 179.97438 * 7 5 4 9 9 H 1.07991 * 120.00287 * 222.83816 * 8 7 5 10 10 C 1.38952 * 119.99594 * 42.83489 * 8 7 5 11 11 N 1.31410 * 120.00091 * 19.10042 * 10 8 7 12 12 Si 1.86798 * 119.99777 * 199.09978 * 10 8 7 13 13 H 1.48494 * 109.47195 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.46978 * 120.00263 * 12 10 8 15 15 H 1.48500 * 109.47047 * 239.99872 * 12 10 8 16 16 C 1.46500 * 119.99983 * 0.02562 * 7 5 4 17 17 C 1.54273 * 110.02977 * 239.58691 * 16 7 5 18 18 C 1.54966 * 104.15534 * 217.13598 * 17 16 7 19 19 C 1.54884 * 102.78114 * 37.88430 * 18 17 16 20 20 C 1.53873 * 110.03500 * 122.36880 * 16 7 5 21 21 N 1.46500 * 109.47129 * 119.99810 * 2 1 3 22 22 C 1.34775 * 120.00454 * 275.00202 * 21 2 1 23 23 O 1.21280 * 119.99764 * 359.97438 * 22 21 2 24 24 C 1.50699 * 120.00315 * 180.02562 * 22 21 2 25 25 C 1.55239 * 110.57919 * 294.87519 * 24 22 21 26 26 C 1.54890 * 102.58665 * 203.33736 * 25 24 22 27 27 C 1.54264 * 104.31380 * 37.93204 * 26 25 24 28 28 C 1.53871 * 106.59646 * 336.32419 * 27 26 25 29 29 H 1.09000 * 109.47304 * 59.99819 * 1 2 3 30 30 H 1.08998 * 109.47000 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47517 * 299.99839 * 1 2 3 32 32 H 1.09002 * 109.46708 * 294.99895 * 4 2 1 33 33 H 1.08994 * 109.47290 * 54.99491 * 4 2 1 34 34 H 0.97002 * 120.00308 * 174.73074 * 11 10 8 35 35 H 1.09000 * 110.01856 * 0.97151 * 16 7 5 36 36 H 1.09000 * 110.48661 * 335.77821 * 17 16 7 37 37 H 1.08994 * 110.48356 * 98.42770 * 17 16 7 38 38 H 1.09008 * 110.71969 * 279.57054 * 18 17 16 39 39 H 1.09001 * 110.91914 * 156.30074 * 18 17 16 40 40 H 1.08995 * 110.48632 * 203.40069 * 19 18 17 41 41 H 1.09005 * 110.59489 * 80.81804 * 19 18 17 42 42 H 1.08999 * 110.03285 * 238.57061 * 20 16 7 43 43 H 1.08996 * 110.03135 * 359.94992 * 20 16 7 44 44 H 0.97002 * 119.99915 * 95.00287 * 21 2 1 45 45 H 1.08995 * 110.43535 * 57.45480 * 24 22 21 46 46 H 1.09001 * 110.89625 * 85.04911 * 25 24 22 47 47 H 1.09003 * 110.76541 * 321.56997 * 25 24 22 48 48 H 1.08994 * 110.48758 * 279.18522 * 26 25 24 49 49 H 1.09004 * 110.48425 * 156.67740 * 26 25 24 50 50 H 1.09003 * 110.03052 * 95.60728 * 27 26 25 51 51 H 1.08996 * 110.03386 * 216.98568 * 27 26 25 52 52 H 1.09007 * 110.03519 * 119.28806 * 28 27 26 53 53 H 1.08998 * 110.03173 * 240.66220 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5420 -0.6148 -1.3127 6 8 4.1450 -0.0202 -0.4443 7 7 4.2150 -1.1803 -2.3342 8 6 5.5814 -1.0831 -2.3922 9 1 6.0679 -0.8661 -3.3315 10 6 6.3401 -1.2639 -1.2422 11 7 5.8233 -1.8828 -0.2046 12 14 8.0948 -0.6273 -1.1714 13 1 8.4361 0.0277 -2.4596 14 1 8.2198 0.3578 -0.0673 15 1 9.0233 -1.7609 -0.9306 16 6 3.4866 -1.8979 -3.3833 17 6 3.9598 -3.3649 -3.4463 18 6 3.9463 -3.7028 -4.9586 19 6 4.4427 -2.3873 -5.6081 20 6 3.7931 -1.2766 -4.7573 21 7 2.0183 -0.6906 1.1962 22 6 2.1470 -0.0183 2.3572 23 8 1.8590 1.1586 2.4115 24 6 2.6499 -0.7285 3.5875 25 6 1.6442 -1.8232 4.0350 26 6 1.9765 -1.9926 5.5383 27 6 2.2828 -0.5611 6.0249 28 6 2.7109 0.2425 4.7845 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.7517 -1.7714 -1.2056 33 1 1.6055 -0.2616 -2.1369 34 1 6.3754 -2.0768 0.5690 35 1 2.4151 -1.8594 -3.1867 36 1 4.9685 -3.4580 -3.0438 37 1 3.2703 -4.0117 -2.9039 38 1 2.9360 -3.9408 -5.2916 39 1 4.6278 -4.5242 -5.1799 40 1 4.1058 -2.3218 -6.6426 41 1 5.5296 -2.3207 -5.5569 42 1 2.8704 -0.9373 -5.2278 43 1 4.4832 -0.4406 -4.6434 44 1 2.2490 -1.6317 1.1526 45 1 3.6306 -1.1656 3.4004 46 1 1.8162 -2.7537 3.4941 47 1 0.6174 -1.4821 3.9024 48 1 2.8486 -2.6338 5.6663 49 1 1.1206 -2.4028 6.0743 50 1 1.3904 -0.1181 6.4671 51 1 3.0912 -0.5801 6.7557 52 1 2.0263 1.0757 4.6248 53 1 3.7274 0.6144 4.9131 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128224321.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:17 Heat of formation + Delta-G solvation = -109.618431 kcal Electronic energy + Delta-G solvation = -31312.851255 eV Core-core repulsion = 27375.591636 eV Total energy + Delta-G solvation = -3937.259619 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.20068 -40.43027 -38.56395 -37.96436 -36.52037 -34.97759 -33.52156 -32.54627 -29.90681 -29.55553 -29.39619 -29.07963 -28.27031 -26.16474 -23.80687 -22.22146 -21.38018 -21.33435 -21.24460 -20.80395 -20.38894 -18.45687 -18.07127 -17.55806 -17.23828 -16.72981 -16.55956 -16.18165 -15.83460 -15.60999 -15.58687 -15.11699 -14.99685 -14.49949 -14.32061 -14.18943 -14.06149 -13.63171 -13.48027 -13.36422 -13.01519 -12.91134 -12.80858 -12.75514 -12.44475 -12.35965 -12.20352 -12.12883 -12.08555 -12.05201 -11.99221 -11.88146 -11.79165 -11.72422 -11.69131 -11.31827 -11.31473 -11.22180 -10.67710 -10.64357 -9.95840 -9.75794 -8.90787 -8.12353 -5.81408 1.32288 1.41809 1.45915 1.77424 2.31896 2.41200 2.62079 3.20622 3.32656 3.55045 3.64841 3.79575 3.90470 3.95663 3.97919 4.06923 4.26753 4.33657 4.34930 4.46684 4.51536 4.58025 4.59782 4.61718 4.66715 4.72400 4.74343 4.76710 4.80069 4.86201 4.88666 4.93738 4.94819 4.98943 5.07672 5.13460 5.18258 5.19802 5.23104 5.24541 5.32933 5.34568 5.35808 5.46147 5.50017 5.61312 5.64253 5.72066 5.75257 6.32488 6.69322 7.16674 7.36992 7.40035 7.87658 8.54123 8.96311 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.011945 B = 0.003856 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.465753 B = 7259.006402 C = 8458.926623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.161 3.839 3 H 0.043 0.957 4 C -0.131 4.131 5 C 0.457 3.543 6 O -0.578 6.578 7 N -0.461 5.461 8 C -0.339 4.339 9 H 0.068 0.932 10 C 0.031 3.969 11 N -0.854 5.854 12 Si 0.947 3.053 13 H -0.265 1.265 14 H -0.305 1.305 15 H -0.276 1.276 16 C 0.122 3.878 17 C -0.123 4.123 18 C -0.111 4.111 19 C -0.115 4.115 20 C -0.129 4.129 21 N -0.694 5.694 22 C 0.521 3.479 23 O -0.596 6.596 24 C -0.115 4.115 25 C -0.103 4.103 26 C -0.117 4.117 27 C -0.117 4.117 28 C -0.113 4.113 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.043 0.957 32 H 0.102 0.898 33 H 0.114 0.886 34 H 0.252 0.748 35 H 0.094 0.906 36 H 0.044 0.956 37 H 0.061 0.939 38 H 0.087 0.913 39 H 0.065 0.935 40 H 0.082 0.918 41 H 0.043 0.957 42 H 0.083 0.917 43 H 0.042 0.958 44 H 0.402 0.598 45 H 0.086 0.914 46 H 0.083 0.917 47 H 0.071 0.929 48 H 0.073 0.927 49 H 0.088 0.912 50 H 0.073 0.927 51 H 0.074 0.926 52 H 0.061 0.939 53 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.318 -6.738 0.197 14.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.056 3.944 3 H 0.062 0.938 4 C -0.171 4.171 5 C 0.245 3.755 6 O -0.458 6.458 7 N -0.183 5.183 8 C -0.467 4.467 9 H 0.086 0.914 10 C -0.176 4.176 11 N -0.489 5.489 12 Si 0.775 3.225 13 H -0.189 1.189 14 H -0.233 1.233 15 H -0.202 1.202 16 C 0.018 3.982 17 C -0.162 4.162 18 C -0.148 4.148 19 C -0.152 4.152 20 C -0.167 4.167 21 N -0.342 5.342 22 C 0.308 3.692 23 O -0.478 6.478 24 C -0.137 4.137 25 C -0.141 4.141 26 C -0.154 4.154 27 C -0.155 4.155 28 C -0.151 4.151 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.062 0.938 32 H 0.120 0.880 33 H 0.132 0.868 34 H 0.061 0.939 35 H 0.112 0.888 36 H 0.063 0.937 37 H 0.079 0.921 38 H 0.105 0.895 39 H 0.083 0.917 40 H 0.101 0.899 41 H 0.062 0.938 42 H 0.101 0.899 43 H 0.061 0.939 44 H 0.237 0.763 45 H 0.104 0.896 46 H 0.102 0.898 47 H 0.090 0.910 48 H 0.091 0.909 49 H 0.107 0.893 50 H 0.091 0.909 51 H 0.093 0.907 52 H 0.080 0.920 53 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.191 -5.611 0.837 13.446 hybrid contribution 1.894 0.317 0.165 1.927 sum -10.297 -5.294 1.001 11.621 Atomic orbital electron populations 1.22061 0.92521 1.03315 1.02497 1.20588 0.94519 0.95697 0.83607 0.93834 1.21924 0.93092 1.03015 0.99085 1.20762 0.89547 0.81300 0.83859 1.90548 1.70792 1.45014 1.39482 1.43629 1.04969 1.47359 1.22373 1.18880 0.82148 1.50562 0.95126 0.91386 1.25690 1.00758 0.95105 0.96026 1.69882 1.36491 1.36593 1.05957 0.85596 0.81240 0.78075 0.77585 1.18909 1.23279 1.20179 1.22012 0.96022 0.91747 0.88445 1.22570 1.00976 0.95494 0.97150 1.22415 1.01842 0.96937 0.93641 1.22244 0.99371 0.94610 0.99024 1.22432 1.00831 0.98363 0.95093 1.45756 1.65656 1.13826 1.08958 1.20856 0.76099 0.86599 0.85605 1.90573 1.53346 1.17796 1.86059 1.22225 1.00980 0.98073 0.92377 1.22511 0.97517 0.96693 0.97377 1.22350 1.02459 0.96464 0.94156 1.22124 1.01782 0.95404 0.96173 1.22041 1.01326 0.98079 0.93692 0.89757 0.90265 0.93758 0.87998 0.86781 0.93851 0.88789 0.93671 0.92067 0.89478 0.91663 0.89905 0.93773 0.89873 0.93909 0.76321 0.89553 0.89817 0.91015 0.90869 0.89309 0.90853 0.90744 0.92042 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.74 9.48 71.98 0.68 -3.06 16 2 C 0.16 5.65 2.13 44.99 0.10 5.75 16 3 H 0.04 1.93 7.39 -2.38 -0.02 1.92 16 4 C -0.13 -4.38 3.56 29.85 0.11 -4.27 16 5 C 0.46 21.63 6.83 87.66 0.60 22.23 16 6 O -0.58 -33.48 13.00 -3.09 -0.04 -33.52 16 7 N -0.46 -21.34 2.46 -609.38 -1.50 -22.84 16 8 C -0.34 -18.02 7.46 84.04 0.63 -17.40 16 9 H 0.07 3.62 7.08 -2.92 -0.02 3.60 16 10 C 0.03 1.72 4.35 84.93 0.37 2.09 16 11 N -0.85 -49.16 11.67 21.66 0.25 -48.91 16 12 Si 0.95 46.32 29.60 68.60 2.03 48.35 16 13 H -0.26 -12.41 7.11 99.48 0.71 -11.70 16 14 H -0.31 -15.93 7.11 99.48 0.71 -15.23 16 15 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 16 C 0.12 4.22 3.20 45.72 0.15 4.37 16 17 C -0.12 -4.14 6.42 31.70 0.20 -3.93 16 18 C -0.11 -2.79 6.91 31.91 0.22 -2.57 16 19 C -0.11 -3.08 6.83 31.67 0.22 -2.86 16 20 C -0.13 -3.96 6.19 31.32 0.19 -3.77 16 21 N -0.69 -25.27 4.21 -442.55 -1.86 -27.13 16 22 C 0.52 20.47 7.10 87.66 0.62 21.09 16 23 O -0.60 -27.67 15.09 -3.03 -0.05 -27.71 16 24 C -0.12 -3.69 3.25 -10.34 -0.03 -3.72 16 25 C -0.10 -2.39 6.34 32.01 0.20 -2.18 16 26 C -0.12 -2.21 6.82 31.67 0.22 -2.00 16 27 C -0.12 -2.52 6.80 31.32 0.21 -2.30 16 28 C -0.11 -3.41 6.18 31.32 0.19 -3.22 16 29 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.10 2.92 7.81 -2.39 -0.02 2.90 16 33 H 0.11 3.15 7.77 -2.39 -0.02 3.13 16 34 H 0.25 14.29 8.32 -92.71 -0.77 13.52 16 35 H 0.09 2.70 5.82 -2.39 -0.01 2.69 16 36 H 0.04 1.93 7.10 -2.39 -0.02 1.92 16 37 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 39 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 42 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.04 1.59 6.85 -2.39 -0.02 1.58 16 44 H 0.40 13.84 8.60 -92.71 -0.80 13.04 16 45 H 0.09 3.01 8.14 -2.39 -0.02 3.00 16 46 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.07 1.63 8.06 -2.39 -0.02 1.61 16 48 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 49 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 50 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 51 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 52 H 0.06 2.09 6.85 -2.38 -0.02 2.08 16 53 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -75.77 409.15 3.80 -71.98 By element: Atomic # 1 Polarization: 35.45 SS G_CDS: 0.08 Total: 35.53 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: 4.88 Total: 4.25 kcal Atomic # 7 Polarization: -95.77 SS G_CDS: -3.11 Total: -98.88 kcal Atomic # 8 Polarization: -61.14 SS G_CDS: -0.09 Total: -61.23 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -75.77 3.80 -71.98 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128224321.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.641 kcal (2) G-P(sol) polarization free energy of solvation -75.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds