Wall clock time and date at job start Tue Mar 31 2020 19:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47197 * 2 1 4 4 C 1.50698 * 109.47634 * 239.99298 * 2 1 3 5 5 H 1.07988 * 120.00716 * 240.00419 * 4 2 1 6 6 C 1.37884 * 119.99204 * 60.00119 * 4 2 1 7 7 N 1.31509 * 120.00570 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 119.99583 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46864 * 89.99982 * 8 6 4 10 10 H 1.48491 * 109.47147 * 209.99802 * 8 6 4 11 11 H 1.48499 * 109.46888 * 330.00498 * 8 6 4 12 12 N 1.46507 * 109.46877 * 119.99888 * 2 1 3 13 13 C 1.34777 * 119.99713 * 275.00234 * 12 2 1 14 14 O 1.21284 * 119.99921 * 359.97438 * 13 12 2 15 15 C 1.50703 * 119.99991 * 180.02562 * 13 12 2 16 16 C 1.53002 * 109.46966 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.46817 * 179.97438 * 16 15 13 18 18 C 1.53006 * 109.47127 * 60.00361 * 17 16 15 19 19 N 1.46504 * 109.46883 * 180.02562 * 18 17 16 20 20 C 1.34777 * 119.99637 * 204.99943 * 19 18 17 21 21 O 1.21284 * 119.99852 * 359.97438 * 20 19 18 22 22 C 1.50698 * 119.99873 * 180.02562 * 20 19 18 23 23 C 1.54266 * 110.02867 * 297.90175 * 22 20 19 24 24 C 1.54968 * 104.15796 * 217.13928 * 23 22 20 25 25 C 1.54884 * 102.77858 * 37.89030 * 24 23 22 26 26 C 1.53881 * 110.03133 * 180.69036 * 22 20 19 27 27 C 1.52999 * 109.46626 * 299.99539 * 18 17 16 28 28 C 1.52996 * 109.47130 * 60.00074 * 15 13 12 29 29 H 1.09002 * 109.46681 * 179.97438 * 1 2 3 30 30 H 1.08988 * 109.47315 * 300.00280 * 1 2 3 31 31 H 1.09000 * 109.46789 * 60.00422 * 1 2 3 32 32 H 0.96996 * 120.00294 * 179.97438 * 7 6 4 33 33 H 0.96997 * 119.99878 * 95.00323 * 12 2 1 34 34 H 1.08996 * 109.46805 * 299.99859 * 15 13 12 35 35 H 1.09002 * 109.47070 * 60.00090 * 16 15 13 36 36 H 1.08996 * 109.47407 * 299.99690 * 16 15 13 37 37 H 1.09001 * 109.47502 * 300.00518 * 17 16 15 38 38 H 1.09001 * 109.47289 * 180.02562 * 17 16 15 39 39 H 1.08993 * 109.46955 * 60.00011 * 18 17 16 40 40 H 0.96998 * 120.00034 * 24.99825 * 19 18 17 41 41 H 1.08999 * 110.01852 * 59.29562 * 22 20 19 42 42 H 1.08994 * 110.48912 * 335.78786 * 23 22 20 43 43 H 1.09000 * 110.48167 * 98.43321 * 23 22 20 44 44 H 1.08999 * 110.72148 * 279.57517 * 24 23 22 45 45 H 1.09003 * 110.92405 * 156.30000 * 24 23 22 46 46 H 1.08997 * 110.48772 * 203.40408 * 25 24 23 47 47 H 1.09002 * 110.59942 * 80.82024 * 25 24 23 48 48 H 1.09001 * 110.03047 * 238.57102 * 26 22 20 49 49 H 1.09008 * 110.03001 * 359.94402 * 26 22 20 50 50 H 1.09002 * 109.46719 * 180.02562 * 27 18 17 51 51 H 1.08993 * 109.47839 * 299.99931 * 27 18 17 52 52 H 1.09001 * 109.46993 * 300.00313 * 28 15 13 53 53 H 1.09000 * 109.47380 * 59.99418 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7105 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2395 -2.4826 7 7 0.9437 0.8300 -2.6034 8 14 2.3228 -1.1197 -4.0079 9 1 1.3451 -2.1619 -4.4122 10 1 2.4875 -0.1405 -5.1119 11 1 3.6311 -1.7568 -3.7117 12 7 2.0183 -0.6906 1.1963 13 6 2.1469 -0.0182 2.3572 14 8 1.8589 1.1587 2.4114 15 6 2.6498 -0.7284 3.5876 16 6 2.7016 0.2549 4.7586 17 6 3.2115 -0.4663 6.0079 18 6 4.6140 -1.0172 5.7421 19 7 5.1019 -1.7083 6.9382 20 6 6.4269 -1.8319 7.1515 21 8 7.2153 -1.3714 6.3531 22 6 6.9289 -2.5433 8.3816 23 6 6.4656 -1.7969 9.6496 24 6 7.6636 -1.9255 10.6242 25 6 8.8865 -1.7851 9.6842 26 6 8.4675 -2.5362 8.4036 27 6 4.5620 -2.0005 4.5711 28 6 4.0525 -1.2783 3.3216 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8898 31 1 -0.3633 0.5138 -0.8900 32 1 0.7097 1.1616 -3.4844 33 1 2.2490 -1.6318 1.1527 34 1 1.9776 -1.5507 3.8326 35 1 1.7024 0.6471 4.9483 36 1 3.3740 1.0769 4.5134 37 1 2.5388 -1.2882 6.2531 38 1 3.2480 0.2341 6.8423 39 1 5.2866 -0.1953 5.4970 40 1 4.4714 -2.0768 7.5765 41 1 6.5600 -3.5688 8.3961 42 1 6.2678 -0.7489 9.4247 43 1 5.5788 -2.2719 10.0692 44 1 7.6611 -2.9004 11.1118 45 1 7.6512 -1.1252 11.3641 46 1 9.7655 -2.2511 10.1294 47 1 9.0826 -0.7357 9.4641 48 1 8.8453 -3.5583 8.4296 49 1 8.8511 -2.0190 7.5240 50 1 5.5611 -2.3933 4.3820 51 1 3.8893 -2.8223 4.8162 52 1 4.0160 -1.9787 2.4872 53 1 4.7247 -0.4560 3.0765 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194620947.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:55 Heat of formation + Delta-G solvation = -141.275722 kcal Electronic energy + Delta-G solvation = -29414.944992 eV Core-core repulsion = 25476.312610 eV Total energy + Delta-G solvation = -3938.632382 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.48916 -40.83536 -38.96251 -37.75429 -36.69925 -35.23289 -34.30145 -31.93503 -31.58478 -30.53664 -29.57298 -29.23216 -27.35031 -24.96769 -23.71677 -23.14305 -22.22996 -21.52578 -21.36167 -20.87981 -20.19731 -18.94164 -18.33950 -17.55421 -17.27986 -17.13389 -16.59795 -16.29227 -16.13146 -15.86332 -15.44691 -15.05891 -15.02015 -14.64213 -14.51632 -14.44922 -14.21787 -13.92699 -13.71859 -13.44953 -13.22021 -12.99717 -12.86199 -12.71125 -12.66833 -12.59738 -12.31813 -12.26247 -12.17258 -12.14198 -12.10897 -11.99173 -11.91775 -11.62105 -11.49254 -11.41053 -11.28001 -11.10157 -10.75053 -10.63417 -10.46643 -10.01309 -9.72271 -8.18418 -6.35894 1.43111 1.44353 1.54746 1.68438 1.84808 2.19926 2.35516 2.66966 3.11693 3.53889 3.65551 3.67578 3.70027 3.80592 3.90505 4.07952 4.19165 4.27161 4.36840 4.38939 4.46091 4.49866 4.50747 4.56638 4.60566 4.70909 4.72454 4.74760 4.82586 4.88832 4.92128 5.01142 5.04285 5.08723 5.10036 5.10458 5.16458 5.19331 5.25730 5.27194 5.33052 5.39345 5.43011 5.44566 5.48068 5.59867 5.62100 5.69872 5.91356 6.10183 6.63725 6.72432 6.99539 7.32040 7.34028 7.59314 8.87792 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.023224 B = 0.001972 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.356971 B =14197.323144 C =15039.854789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.268 3.732 3 H -0.006 1.006 4 C -0.545 4.545 5 H 0.073 0.927 6 C 0.012 3.988 7 N -0.918 5.918 8 Si 0.973 3.027 9 H -0.269 1.269 10 H -0.287 1.287 11 H -0.265 1.265 12 N -0.705 5.705 13 C 0.498 3.502 14 O -0.604 6.604 15 C -0.093 4.093 16 C -0.093 4.093 17 C -0.108 4.108 18 C 0.144 3.856 19 N -0.709 5.709 20 C 0.512 3.488 21 O -0.588 6.588 22 C -0.108 4.108 23 C -0.111 4.111 24 C -0.120 4.120 25 C -0.127 4.127 26 C -0.125 4.125 27 C -0.113 4.113 28 C -0.103 4.103 29 H 0.042 0.958 30 H 0.012 0.988 31 H 0.065 0.935 32 H 0.265 0.735 33 H 0.404 0.596 34 H 0.127 0.873 35 H 0.069 0.931 36 H 0.044 0.956 37 H 0.100 0.900 38 H 0.083 0.917 39 H 0.055 0.945 40 H 0.418 0.582 41 H 0.124 0.876 42 H 0.057 0.943 43 H 0.101 0.899 44 H 0.085 0.915 45 H 0.073 0.927 46 H 0.075 0.925 47 H 0.050 0.950 48 H 0.079 0.921 49 H 0.056 0.944 50 H 0.054 0.946 51 H 0.094 0.906 52 H 0.078 0.922 53 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.888 -12.881 28.876 32.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.164 3.836 3 H 0.012 0.988 4 C -0.583 4.583 5 H 0.091 0.909 6 C -0.188 4.188 7 N -0.556 5.556 8 Si 0.797 3.203 9 H -0.194 1.194 10 H -0.213 1.213 11 H -0.190 1.190 12 N -0.353 5.353 13 C 0.285 3.715 14 O -0.486 6.486 15 C -0.114 4.114 16 C -0.132 4.132 17 C -0.146 4.146 18 C 0.039 3.961 19 N -0.360 5.360 20 C 0.300 3.700 21 O -0.468 6.468 22 C -0.129 4.129 23 C -0.149 4.149 24 C -0.157 4.157 25 C -0.165 4.165 26 C -0.163 4.163 27 C -0.152 4.152 28 C -0.142 4.142 29 H 0.061 0.939 30 H 0.031 0.969 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.239 0.761 34 H 0.145 0.855 35 H 0.088 0.912 36 H 0.063 0.937 37 H 0.119 0.881 38 H 0.101 0.899 39 H 0.073 0.927 40 H 0.255 0.745 41 H 0.142 0.858 42 H 0.075 0.925 43 H 0.119 0.881 44 H 0.103 0.897 45 H 0.092 0.908 46 H 0.094 0.906 47 H 0.068 0.932 48 H 0.097 0.903 49 H 0.075 0.925 50 H 0.073 0.927 51 H 0.113 0.887 52 H 0.097 0.903 53 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 9.146 -11.613 28.190 31.831 hybrid contribution 0.118 -0.069 -1.398 1.405 sum 9.265 -11.682 26.792 30.661 Atomic orbital electron populations 1.21877 0.98202 0.99494 0.99511 1.18333 0.91216 0.91779 0.82239 0.98822 1.21538 1.32493 1.13482 0.90829 0.90936 1.25823 0.94941 0.95607 1.02383 1.70053 1.37082 1.23887 1.24564 0.85338 0.78956 0.78049 0.77946 1.19445 1.21302 1.18966 1.46303 1.65060 1.14177 1.09785 1.21483 0.77062 0.87055 0.85883 1.90623 1.53372 1.18591 1.86057 1.21384 0.98761 0.99672 0.91626 1.21225 1.01839 0.96885 0.93207 1.21712 0.94315 1.01349 0.97176 1.20900 0.95794 0.94316 0.85073 1.45915 1.06833 1.58239 1.25021 1.21237 0.82305 0.78890 0.87578 1.90686 1.56501 1.50632 1.49015 1.22026 0.97304 1.01449 0.92140 1.22396 0.99761 0.99881 0.92863 1.22519 0.93167 1.03006 0.97041 1.22377 0.99131 0.99756 0.95228 1.22180 0.93497 1.01596 0.98994 1.21799 1.01490 0.98542 0.93328 1.21438 0.93762 0.99940 0.99052 0.93934 0.96894 0.91635 0.92577 0.76080 0.85544 0.91214 0.93720 0.88127 0.89881 0.92685 0.74488 0.85812 0.92451 0.88065 0.89668 0.90802 0.90583 0.93151 0.90280 0.92543 0.92745 0.88712 0.90331 0.93785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.78 9.26 71.98 0.67 -6.11 16 2 C 0.27 14.18 2.56 44.24 0.11 14.29 16 3 H -0.01 -0.39 7.58 -2.39 -0.02 -0.41 16 4 C -0.55 -29.28 8.73 25.60 0.22 -29.06 16 5 H 0.07 3.63 7.74 -2.92 -0.02 3.61 16 6 C 0.01 0.68 5.30 84.66 0.45 1.13 16 7 N -0.92 -53.44 11.32 21.45 0.24 -53.19 16 8 Si 0.97 42.62 29.54 68.60 2.03 44.64 16 9 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 10 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 12 N -0.70 -29.44 4.96 -446.07 -2.21 -31.65 16 13 C 0.50 19.82 7.12 87.66 0.62 20.44 16 14 O -0.60 -30.11 15.64 -3.04 -0.05 -30.15 16 15 C -0.09 -2.45 2.53 -11.54 -0.03 -2.48 16 16 C -0.09 -2.27 4.49 30.59 0.14 -2.13 16 17 C -0.11 -1.64 5.39 30.60 0.16 -1.48 16 18 C 0.14 2.68 2.45 44.99 0.11 2.79 16 19 N -0.71 -9.75 5.01 -442.52 -2.22 -11.97 16 20 C 0.51 9.71 6.96 87.66 0.61 10.32 16 21 O -0.59 -17.53 14.87 -3.04 -0.05 -17.58 16 22 C -0.11 -1.26 3.30 -10.81 -0.04 -1.29 16 23 C -0.11 -0.87 6.30 31.70 0.20 -0.67 16 24 C -0.12 -0.92 6.91 31.91 0.22 -0.70 16 25 C -0.13 -1.52 6.83 31.67 0.22 -1.30 16 26 C -0.12 -1.84 6.40 31.32 0.20 -1.64 16 27 C -0.11 -2.17 5.50 30.61 0.17 -2.00 16 28 C -0.10 -2.54 5.10 30.61 0.16 -2.38 16 29 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 3.69 6.07 -2.39 -0.01 3.67 16 32 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 33 H 0.40 14.10 7.96 -92.71 -0.74 13.36 16 34 H 0.13 2.50 8.14 -2.39 -0.02 2.48 16 35 H 0.07 1.79 8.10 -2.39 -0.02 1.77 16 36 H 0.04 1.33 8.10 -2.39 -0.02 1.31 16 37 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.05 1.44 7.58 -2.39 -0.02 1.42 16 40 H 0.42 2.59 8.59 -92.71 -0.80 1.79 16 41 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.06 0.63 7.85 -2.39 -0.02 0.61 16 43 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 44 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 45 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 46 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 48 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.06 1.24 6.39 -2.38 -0.02 1.23 16 50 H 0.05 1.24 8.14 -2.39 -0.02 1.23 16 51 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 52 H 0.08 1.85 7.56 -2.39 -0.02 1.84 16 53 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -77.20 411.75 1.30 -75.90 By element: Atomic # 1 Polarization: 26.90 SS G_CDS: -0.64 Total: 26.26 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: 4.20 Total: -2.27 kcal Atomic # 7 Polarization: -92.62 SS G_CDS: -4.19 Total: -96.81 kcal Atomic # 8 Polarization: -47.64 SS G_CDS: -0.09 Total: -47.73 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.64 kcal Total: -77.20 1.30 -75.90 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194620947.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.375 kcal (2) G-P(sol) polarization free energy of solvation -77.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds