Wall clock time and date at job start Tue Mar 31 2020 19:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36000 * 116.99607 * 2 1 4 4 C 1.38565 * 120.07389 * 0.02757 * 3 2 1 5 5 C 1.38239 * 120.00050 * 179.70226 * 4 3 2 6 6 C 1.38258 * 120.14401 * 0.54464 * 5 4 3 7 7 C 1.50703 * 119.92789 * 179.72366 * 6 5 4 8 8 N 1.46896 * 109.47105 * 269.73091 * 7 6 5 9 9 C 1.46896 * 110.99778 * 180.02562 * 8 7 6 10 10 C 1.53003 * 109.47248 * 179.48035 * 9 8 7 11 11 H 1.08999 * 109.46827 * 185.38144 * 10 9 8 12 12 C 1.53001 * 109.46898 * 65.38657 * 10 9 8 13 13 N 1.46892 * 109.46882 * 305.38454 * 10 9 8 14 14 C 1.46903 * 110.99848 * 176.77231 * 13 10 9 15 15 C 1.46895 * 111.00358 * 300.72126 * 13 10 9 16 16 C 1.38246 * 120.14561 * 359.45168 * 6 5 4 17 17 C 1.38566 * 119.99936 * 0.27573 * 16 6 5 18 18 O 1.35994 * 120.07067 * 179.97438 * 17 16 6 19 19 C 1.42897 * 117.00134 * 359.97438 * 18 17 16 20 20 C 1.52997 * 109.47000 * 179.97438 * 19 18 17 21 21 C 1.50700 * 109.47021 * 180.02562 * 20 19 18 22 22 H 1.07996 * 120.00161 * 0.02562 * 21 20 19 23 23 C 1.37881 * 120.00000 * 180.02562 * 21 20 19 24 24 N 1.31517 * 120.00121 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 119.99979 * 0.02562 * 23 21 20 26 26 H 1.48502 * 109.47419 * 89.99622 * 25 23 21 27 27 H 1.48498 * 109.47361 * 209.99612 * 25 23 21 28 28 H 1.48494 * 109.47087 * 329.99796 * 25 23 21 29 29 H 1.09009 * 109.46564 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47139 * 299.99344 * 1 2 3 31 31 H 1.08994 * 109.47268 * 60.00039 * 1 2 3 32 32 H 1.08003 * 119.99684 * 359.97438 * 4 3 2 33 33 H 1.07998 * 119.93230 * 180.29159 * 5 4 3 34 34 H 1.08992 * 109.46833 * 149.72672 * 7 6 5 35 35 H 1.09002 * 109.46532 * 29.73147 * 7 6 5 36 36 H 1.00899 * 111.00086 * 56.04104 * 8 7 6 37 37 H 1.09000 * 109.47550 * 59.47600 * 9 8 7 38 38 H 1.09008 * 109.47100 * 299.47710 * 9 8 7 39 39 H 1.08998 * 109.47335 * 59.99725 * 12 10 9 40 40 H 1.09005 * 109.46593 * 299.99535 * 12 10 9 41 41 H 1.09000 * 109.47211 * 180.02562 * 12 10 9 42 42 H 1.08993 * 109.47238 * 60.00062 * 14 13 10 43 43 H 1.09004 * 109.47320 * 180.02562 * 14 13 10 44 44 H 1.09002 * 109.46954 * 299.99493 * 14 13 10 45 45 H 1.09004 * 109.47171 * 66.71046 * 15 13 10 46 46 H 1.08997 * 109.47666 * 186.71207 * 15 13 10 47 47 H 1.08998 * 109.47568 * 306.71565 * 15 13 10 48 48 H 1.07992 * 119.99846 * 180.25245 * 16 6 5 49 49 H 1.08993 * 109.47214 * 300.00267 * 19 18 17 50 50 H 1.09002 * 109.47273 * 60.00461 * 19 18 17 51 51 H 1.09001 * 109.47787 * 300.00257 * 20 19 18 52 52 H 1.09009 * 109.47232 * 60.00244 * 20 19 18 53 53 H 0.96996 * 119.99733 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2931 2.3748 0.0006 5 6 1.9222 3.6058 0.0068 6 6 3.3027 3.6800 0.0011 7 6 3.9834 5.0245 0.0016 8 7 4.2045 5.4620 -1.3832 9 6 4.8683 6.7718 -1.4218 10 6 5.0928 7.1871 -2.8772 11 1 5.6694 8.1117 -2.9063 12 6 3.7409 7.4076 -3.5589 13 7 5.8290 6.1284 -3.5805 14 6 5.9966 6.4588 -5.0020 15 6 7.1279 5.8770 -2.9420 16 6 4.0602 2.5235 0.0006 17 6 3.4359 1.2864 0.0000 18 8 4.1796 0.1478 -0.0010 19 6 5.6003 0.3009 -0.0020 20 6 6.2619 -1.0786 -0.0025 21 6 7.7602 -0.9172 -0.0029 22 1 8.1969 0.0705 -0.0025 23 6 8.5736 -2.0305 -0.0039 24 7 9.8812 -1.8897 -0.0048 25 14 7.8182 -3.7390 -0.0054 26 1 7.6179 -4.1906 -1.4058 27 1 8.7270 -4.6827 0.6938 28 1 6.5092 -3.7021 0.6947 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 0.2145 2.3196 0.0006 33 1 1.3340 4.5115 0.0120 34 1 4.9415 4.9464 0.5154 35 1 3.3535 5.7504 0.5158 36 1 3.3378 5.4800 -1.8994 37 1 5.8285 6.7078 -0.9100 38 1 4.2406 7.5120 -0.9254 39 1 3.1945 8.1931 -3.0370 40 1 3.1643 6.4829 -3.5297 41 1 3.9007 7.7030 -4.5958 42 1 6.5521 7.3918 -5.0951 43 1 6.5444 5.6581 -5.4991 44 1 5.0170 6.5711 -5.4668 45 1 6.9693 5.4535 -1.9501 46 1 7.7016 5.1764 -3.5486 47 1 7.6766 6.8145 -2.8531 48 1 5.1384 2.5842 0.0002 49 1 5.9058 0.8511 -0.8920 50 1 5.9072 0.8503 0.8880 51 1 5.9563 -1.6285 0.8877 52 1 5.9550 -1.6285 -0.8923 53 1 10.4533 -2.6729 -0.0058 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264229802.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:00 Heat of formation + Delta-G solvation = -64.028910 kcal Electronic energy + Delta-G solvation = -29422.874159 eV Core-core repulsion = 25487.591450 eV Total energy + Delta-G solvation = -3935.282709 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.49575 -39.56282 -39.45133 -38.30869 -36.02754 -35.37936 -32.99267 -32.53491 -31.13840 -30.71076 -29.06238 -28.13705 -27.16016 -26.41586 -25.26506 -24.27747 -23.68738 -22.41155 -21.84599 -20.53932 -19.55183 -18.94046 -17.88238 -17.61072 -17.16857 -17.13495 -16.72260 -16.34048 -16.30771 -15.88960 -15.61825 -15.50671 -15.30905 -15.18066 -14.86081 -14.57869 -14.33771 -14.22666 -13.97227 -13.78013 -13.34026 -13.18435 -13.14668 -13.10810 -12.92795 -12.75290 -12.57643 -12.52992 -12.38427 -12.20795 -12.14257 -11.92062 -11.88045 -11.81922 -11.75892 -11.55693 -11.47222 -11.40204 -10.81423 -9.61931 -9.17560 -9.07128 -8.68090 -8.34905 -6.41157 0.35601 0.47962 1.35377 1.36242 1.50106 2.33311 2.36105 2.44842 2.70903 2.99774 3.06163 3.52668 3.81482 3.92236 3.94509 4.07257 4.09632 4.20404 4.22560 4.25911 4.32243 4.43026 4.45326 4.45785 4.48307 4.50266 4.61172 4.65388 4.67972 4.68416 4.73404 4.75635 4.76527 4.85466 4.89041 4.92783 4.99101 5.10442 5.11444 5.16365 5.24364 5.29710 5.31703 5.38725 5.50686 5.65670 5.82594 6.09992 6.16183 6.22262 6.24090 6.34721 6.63192 6.63588 6.72590 7.23765 8.80873 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.007464 B = 0.003288 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3750.466642 B = 8513.689027 C =11490.936479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.340 6.340 3 C 0.076 3.924 4 C -0.165 4.165 5 C -0.107 4.107 6 C -0.079 4.079 7 C 0.109 3.891 8 N -0.676 5.676 9 C 0.068 3.932 10 C 0.081 3.919 11 H 0.045 0.955 12 C -0.146 4.146 13 N -0.539 5.539 14 C 0.022 3.978 15 C 0.032 3.968 16 C -0.160 4.160 17 C 0.069 3.931 18 O -0.332 6.332 19 C 0.090 3.910 20 C -0.004 4.004 21 C -0.535 4.535 22 H 0.042 0.958 23 C 0.016 3.984 24 N -0.941 5.941 25 Si 0.947 3.053 26 H -0.265 1.265 27 H -0.276 1.276 28 H -0.254 1.254 29 H 0.110 0.890 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.165 0.835 33 H 0.158 0.842 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.346 0.654 37 H 0.062 0.938 38 H 0.050 0.950 39 H 0.072 0.928 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.025 0.975 43 H 0.059 0.941 44 H 0.078 0.922 45 H 0.062 0.938 46 H 0.056 0.944 47 H 0.026 0.974 48 H 0.121 0.879 49 H 0.053 0.947 50 H 0.055 0.945 51 H 0.025 0.975 52 H 0.023 0.977 53 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.039 21.114 -4.080 30.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.255 6.255 3 C 0.031 3.969 4 C -0.184 4.184 5 C -0.125 4.125 6 C -0.079 4.079 7 C -0.019 4.019 8 N -0.309 5.309 9 C -0.061 4.061 10 C -0.027 4.027 11 H 0.063 0.937 12 C -0.203 4.203 13 N -0.264 5.264 14 C -0.126 4.126 15 C -0.116 4.116 16 C -0.180 4.180 17 C 0.024 3.976 18 O -0.247 6.247 19 C 0.016 3.984 20 C -0.041 4.041 21 C -0.573 4.573 22 H 0.061 0.939 23 C -0.182 4.182 24 N -0.581 5.581 25 Si 0.770 3.230 26 H -0.190 1.190 27 H -0.201 1.201 28 H -0.178 1.178 29 H 0.128 0.872 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.182 0.818 33 H 0.176 0.824 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.166 0.834 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.091 0.909 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.044 0.956 43 H 0.078 0.922 44 H 0.097 0.903 45 H 0.081 0.919 46 H 0.074 0.926 47 H 0.045 0.955 48 H 0.139 0.861 49 H 0.071 0.929 50 H 0.073 0.927 51 H 0.043 0.957 52 H 0.041 0.959 53 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -20.534 19.862 -4.117 28.863 hybrid contribution 0.469 0.469 0.174 0.686 sum -20.065 20.331 -3.943 28.836 Atomic orbital electron populations 1.23340 0.76498 1.05275 1.02447 1.86172 1.23422 1.26648 1.89270 1.18579 0.88829 0.86306 1.03187 1.21300 1.00952 0.90443 1.05660 1.21025 0.93207 0.97881 1.00429 1.19620 0.93674 0.94125 1.00510 1.20749 0.99230 0.91436 0.90508 1.60260 1.30167 1.28529 1.11955 1.21997 0.99099 0.89570 0.95446 1.21756 0.95738 0.91640 0.93575 0.93731 1.21894 0.95482 1.02105 1.00828 1.61898 1.18822 1.43264 1.02389 1.22465 1.02013 0.99238 0.88933 1.22271 0.89699 0.99463 1.00209 1.21030 1.00370 0.90967 1.05598 1.18828 0.89364 0.86583 1.02855 1.86109 1.19849 1.29786 1.88969 1.22595 0.76078 0.99518 1.00227 1.19414 0.93858 0.93314 0.97521 1.21085 0.90132 0.94145 1.51915 0.93946 1.25839 0.95028 1.03739 0.93621 1.70021 1.04569 1.31889 1.51582 0.85705 0.79201 0.78662 0.79438 1.18954 1.20122 1.17758 0.87176 0.91217 0.91281 0.81804 0.82438 0.91501 0.92303 0.83425 0.91961 0.93204 0.90876 0.92070 0.91990 0.95620 0.92174 0.90340 0.91880 0.92552 0.95546 0.86060 0.92918 0.92725 0.95655 0.95886 0.92059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.81 113.37 1.11 1.45 16 2 O -0.34 -10.72 10.28 -79.68 -0.82 -11.54 16 3 C 0.08 2.40 6.70 22.57 0.15 2.55 16 4 C -0.17 -3.64 9.04 22.35 0.20 -3.44 16 5 C -0.11 -2.12 9.69 22.27 0.22 -1.90 16 6 C -0.08 -1.92 5.39 -19.86 -0.11 -2.03 16 7 C 0.11 2.14 5.81 85.56 0.50 2.64 16 8 N -0.68 -13.10 6.20 -517.94 -3.21 -16.31 16 9 C 0.07 1.10 4.80 86.31 0.41 1.51 16 10 C 0.08 1.29 2.42 44.92 0.11 1.40 16 11 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 12 C -0.15 -1.80 8.63 71.98 0.62 -1.17 16 13 N -0.54 -11.11 4.60 -923.30 -4.25 -15.36 16 14 C 0.02 0.38 9.12 127.69 1.16 1.54 16 15 C 0.03 0.71 9.05 127.69 1.16 1.87 16 16 C -0.16 -5.25 8.69 22.35 0.19 -5.05 16 17 C 0.07 2.58 6.70 22.57 0.15 2.73 16 18 O -0.33 -14.76 9.92 -79.62 -0.79 -15.55 16 19 C 0.09 4.14 4.68 71.98 0.34 4.48 16 20 C 0.00 -0.19 4.41 29.85 0.13 -0.05 16 21 C -0.53 -32.07 9.66 25.60 0.25 -31.82 16 22 H 0.04 2.73 7.99 -2.91 -0.02 2.71 16 23 C 0.02 0.96 5.47 84.66 0.46 1.42 16 24 N -0.94 -59.50 13.96 21.45 0.30 -59.20 16 25 Si 0.95 46.00 27.47 68.60 1.88 47.89 16 26 H -0.26 -12.36 7.11 99.48 0.71 -11.65 16 27 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 28 H -0.25 -11.89 6.54 99.48 0.65 -11.24 16 29 H 0.11 1.63 8.14 -2.38 -0.02 1.61 16 30 H 0.07 0.98 7.66 -2.39 -0.02 0.96 16 31 H 0.07 0.98 7.66 -2.39 -0.02 0.96 16 32 H 0.16 2.38 6.30 -2.91 -0.02 2.36 16 33 H 0.16 1.91 8.06 -2.91 -0.02 1.88 16 34 H 0.07 1.47 8.08 -2.39 -0.02 1.45 16 35 H 0.06 0.86 8.08 -2.39 -0.02 0.84 16 36 H 0.35 6.15 7.01 -89.69 -0.63 5.52 16 37 H 0.06 1.14 6.85 -2.39 -0.02 1.12 16 38 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 39 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.06 0.86 6.70 -2.38 -0.02 0.85 16 41 H 0.06 0.73 6.35 -2.39 -0.02 0.71 16 42 H 0.03 0.40 8.14 -2.39 -0.02 0.38 16 43 H 0.06 1.12 8.05 -2.38 -0.02 1.10 16 44 H 0.08 1.19 6.25 -2.39 -0.01 1.18 16 45 H 0.06 1.57 6.80 -2.38 -0.02 1.55 16 46 H 0.06 1.33 8.00 -2.39 -0.02 1.31 16 47 H 0.03 0.51 8.12 -2.39 -0.02 0.49 16 48 H 0.12 4.26 6.30 -2.91 -0.02 4.25 16 49 H 0.05 2.40 7.66 -2.39 -0.02 2.38 16 50 H 0.05 2.43 7.66 -2.39 -0.02 2.41 16 51 H 0.03 1.31 7.20 -2.39 -0.02 1.29 16 52 H 0.02 1.18 7.57 -2.38 -0.02 1.16 16 53 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 Total: -1.00 -73.93 416.64 0.37 -73.56 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: 0.20 Total: 20.42 kcal Atomic # 6 Polarization: -30.95 SS G_CDS: 7.06 Total: -23.89 kcal Atomic # 7 Polarization: -83.71 SS G_CDS: -7.16 Total: -90.88 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -1.61 Total: -27.09 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 1.88 Total: 47.89 kcal Total: -73.93 0.37 -73.56 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264229802.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.527 kcal (2) G-P(sol) polarization free energy of solvation -73.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds