Wall clock time and date at job start Tue Mar 31 2020 19:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50700 * 120.00278 * 2 1 4 4 N 1.46498 * 109.47044 * 124.99896 * 3 2 1 5 5 C 1.46494 * 120.00272 * 270.00018 * 4 3 2 6 6 C 1.50700 * 109.47794 * 270.00445 * 5 4 3 7 7 H 1.08001 * 119.99482 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00374 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00246 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00118 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47125 * 59.99640 * 10 8 6 12 12 H 1.48498 * 109.47477 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47301 * 300.00093 * 10 8 6 14 14 C 1.34780 * 119.99711 * 90.00609 * 4 3 2 15 15 O 1.21277 * 119.99855 * 179.97438 * 14 4 3 16 16 C 1.50702 * 119.99943 * 359.97438 * 14 4 3 17 17 C 1.53001 * 109.46638 * 180.02562 * 16 14 4 18 18 H 1.09001 * 109.47009 * 304.99014 * 17 16 14 19 19 C 1.53008 * 109.46508 * 184.99859 * 17 16 14 20 20 N 1.46497 * 109.47201 * 64.99927 * 17 16 14 21 21 C 1.34777 * 119.99525 * 204.99403 * 20 17 16 22 22 O 1.21283 * 120.00463 * 0.02562 * 21 20 17 23 23 C 1.50700 * 119.99675 * 179.72583 * 21 20 17 24 24 C 1.52998 * 109.47092 * 300.27576 * 23 21 20 25 25 C 1.53005 * 109.47342 * 180.02562 * 24 23 21 26 26 C 1.52996 * 109.46953 * 60.00128 * 25 24 23 27 27 C 1.52998 * 109.46992 * 300.00086 * 26 25 24 28 28 C 1.52997 * 109.47441 * 60.00327 * 27 26 25 29 29 H 1.08006 * 119.99872 * 180.02562 * 1 2 3 30 30 H 1.08004 * 120.00110 * 359.97438 * 1 2 3 31 31 H 1.08004 * 120.00110 * 180.02562 * 2 1 3 32 32 H 1.09004 * 109.46499 * 5.00546 * 3 2 1 33 33 H 1.08995 * 109.47318 * 245.00382 * 3 2 1 34 34 H 1.09002 * 109.47004 * 30.00587 * 5 4 3 35 35 H 1.09005 * 109.47063 * 150.00117 * 5 4 3 36 36 H 0.96994 * 120.00487 * 180.02562 * 9 8 6 37 37 H 1.09000 * 109.47319 * 60.00043 * 16 14 4 38 38 H 1.09001 * 109.46713 * 300.00087 * 16 14 4 39 39 H 1.08998 * 109.46811 * 179.97438 * 19 17 16 40 40 H 1.08994 * 109.47201 * 299.99808 * 19 17 16 41 41 H 1.08995 * 109.47273 * 60.00263 * 19 17 16 42 42 H 0.97000 * 120.00580 * 25.00149 * 20 17 16 43 43 H 1.08998 * 109.47585 * 60.27844 * 23 21 20 44 44 H 1.09006 * 109.47458 * 299.99989 * 24 23 21 45 45 H 1.09004 * 109.47239 * 60.00118 * 24 23 21 46 46 H 1.09006 * 109.46726 * 300.00303 * 25 24 23 47 47 H 1.08994 * 109.47101 * 180.02562 * 25 24 23 48 48 H 1.09005 * 109.47125 * 180.02562 * 26 25 24 49 49 H 1.08998 * 109.47408 * 60.00223 * 26 25 24 50 50 H 1.09001 * 109.47857 * 299.99697 * 27 26 25 51 51 H 1.09004 * 109.47239 * 180.02562 * 27 26 25 52 52 H 1.09000 * 109.47849 * 179.97438 * 28 27 26 53 53 H 1.08998 * 109.47443 * 59.99604 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5589 1.8648 2.4248 6 6 2.8443 3.3435 2.4805 7 1 3.3032 3.8370 1.6366 8 6 2.5194 4.0663 3.6087 9 7 1.9601 3.4656 4.6362 10 14 2.8738 5.8991 3.6779 11 1 2.1380 6.5871 2.5869 12 1 2.4329 6.4394 4.9890 13 1 4.3317 6.1280 3.5127 14 6 4.2497 0.8661 0.9823 15 8 5.0200 0.8886 1.9188 16 6 4.6969 0.3173 -0.3481 17 6 6.1531 -0.1412 -0.2471 18 1 6.7694 0.6828 0.1124 19 6 6.6457 -0.5822 -1.6270 20 7 6.2473 -1.2655 0.6874 21 6 7.4081 -1.5165 1.3246 22 8 8.3744 -0.8114 1.1249 23 6 7.5033 -2.6693 2.2906 24 6 6.4903 -2.4731 3.4202 25 6 6.5874 -3.6432 4.4013 26 6 7.9995 -3.7016 4.9872 27 6 9.0125 -3.8978 3.8575 28 6 8.9155 -2.7278 2.8765 29 1 -0.5400 -0.9354 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3585 2.1316 0.0897 33 1 2.6213 1.4026 -0.9314 34 1 1.4888 1.6965 2.5459 35 1 3.0991 1.3601 3.2259 36 1 1.7312 3.9741 5.4298 37 1 4.6120 1.0937 -1.1085 38 1 4.0677 -0.5296 -0.6217 39 1 7.6832 -0.9084 -1.5552 40 1 6.0294 -1.4061 -1.9865 41 1 6.5756 0.2543 -2.3222 42 1 5.4744 -1.8294 0.8474 43 1 7.2879 -3.6008 1.7671 44 1 6.7057 -1.5416 3.9438 45 1 5.4842 -2.4310 3.0029 46 1 6.3722 -4.5749 3.8780 47 1 5.8654 -3.5036 5.2058 48 1 8.0688 -4.5355 5.6858 49 1 8.2147 -2.7700 5.5104 50 1 8.7975 -4.8295 3.3343 51 1 10.0186 -3.9399 4.2749 52 1 9.6375 -2.8673 2.0719 53 1 9.1306 -1.7961 3.3997 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292287153.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:42 Heat of formation + Delta-G solvation = -105.930639 kcal Electronic energy + Delta-G solvation = -30565.273896 eV Core-core repulsion = 26628.174192 eV Total energy + Delta-G solvation = -3937.099704 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.40898 -40.57073 -38.63199 -37.30537 -36.55840 -35.10792 -33.62458 -33.16955 -31.68642 -31.36987 -30.12791 -28.39220 -26.80956 -25.20973 -24.57339 -23.49507 -22.32456 -21.40696 -21.05756 -20.61326 -19.87488 -18.63813 -18.17640 -17.77909 -17.47033 -17.07199 -16.40421 -16.20754 -16.11153 -15.54670 -15.51404 -15.14634 -15.04112 -14.81017 -14.57168 -14.36677 -14.15396 -13.91070 -13.60408 -13.52516 -13.34067 -13.17791 -13.09964 -13.01518 -12.94762 -12.77538 -12.74826 -12.57842 -12.25101 -12.22626 -12.16243 -12.07093 -11.92509 -11.68872 -11.55002 -11.37031 -11.03195 -10.65847 -10.59298 -10.53331 -10.26870 -9.97642 -9.41058 -8.23658 -6.38042 1.33017 1.37545 1.37729 1.44505 1.71428 1.90538 2.32111 2.34486 2.52749 3.05935 3.62759 3.68495 3.70184 3.76886 3.79333 4.09188 4.22778 4.24900 4.27037 4.28464 4.29027 4.42851 4.43932 4.49325 4.55081 4.57458 4.65704 4.66582 4.68220 4.83581 4.90053 4.94668 5.04694 5.09588 5.10446 5.10552 5.17038 5.22499 5.24206 5.24444 5.31992 5.33883 5.37831 5.53106 5.53367 5.62982 5.74753 5.78866 6.00393 6.07053 6.61755 6.70147 6.84150 7.28575 7.35986 7.55354 8.82739 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.009306 B = 0.003453 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3008.215110 B = 8107.145344 C = 9151.641275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.178 4.178 3 C 0.131 3.869 4 N -0.599 5.599 5 C 0.269 3.731 6 C -0.543 4.543 7 H 0.051 0.949 8 C 0.010 3.990 9 N -0.927 5.927 10 Si 0.962 3.038 11 H -0.258 1.258 12 H -0.278 1.278 13 H -0.282 1.282 14 C 0.492 3.508 15 O -0.585 6.585 16 C -0.134 4.134 17 C 0.155 3.845 18 H 0.045 0.955 19 C -0.148 4.148 20 N -0.704 5.704 21 C 0.513 3.487 22 O -0.592 6.592 23 C -0.095 4.095 24 C -0.105 4.105 25 C -0.112 4.112 26 C -0.124 4.124 27 C -0.110 4.110 28 C -0.098 4.098 29 H 0.116 0.884 30 H 0.093 0.907 31 H 0.123 0.877 32 H 0.070 0.930 33 H 0.111 0.889 34 H 0.018 0.982 35 H -0.006 1.006 36 H 0.266 0.734 37 H 0.129 0.871 38 H 0.133 0.867 39 H 0.043 0.957 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.407 0.593 43 H 0.128 0.872 44 H 0.028 0.972 45 H 0.065 0.935 46 H 0.089 0.911 47 H 0.062 0.938 48 H 0.082 0.918 49 H 0.042 0.958 50 H 0.084 0.916 51 H 0.071 0.929 52 H 0.064 0.936 53 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.634 -18.398 -12.143 22.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.197 4.197 3 C 0.009 3.991 4 N -0.330 5.330 5 C 0.148 3.852 6 C -0.582 4.582 7 H 0.070 0.930 8 C -0.189 4.189 9 N -0.566 5.566 10 Si 0.786 3.214 11 H -0.183 1.183 12 H -0.203 1.203 13 H -0.208 1.208 14 C 0.281 3.719 15 O -0.466 6.466 16 C -0.173 4.173 17 C 0.050 3.950 18 H 0.063 0.937 19 C -0.206 4.206 20 N -0.354 5.354 21 C 0.301 3.699 22 O -0.473 6.473 23 C -0.116 4.116 24 C -0.143 4.143 25 C -0.149 4.149 26 C -0.161 4.161 27 C -0.147 4.147 28 C -0.136 4.136 29 H 0.134 0.866 30 H 0.111 0.889 31 H 0.141 0.859 32 H 0.088 0.912 33 H 0.129 0.871 34 H 0.036 0.964 35 H 0.012 0.988 36 H 0.075 0.925 37 H 0.147 0.853 38 H 0.150 0.850 39 H 0.062 0.938 40 H 0.104 0.896 41 H 0.101 0.899 42 H 0.242 0.758 43 H 0.146 0.854 44 H 0.047 0.953 45 H 0.084 0.916 46 H 0.107 0.893 47 H 0.081 0.919 48 H 0.100 0.900 49 H 0.061 0.939 50 H 0.103 0.897 51 H 0.089 0.911 52 H 0.083 0.917 53 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 4.610 -17.819 -11.629 21.772 hybrid contribution -0.297 1.487 0.909 1.768 sum 4.313 -16.332 -10.721 20.007 Atomic orbital electron populations 1.24037 0.95821 1.02648 0.98822 1.23349 0.96604 0.98396 1.01391 1.20843 0.92731 0.96282 0.89244 1.48209 1.11928 1.60057 1.12809 1.18576 0.93543 0.92319 0.80811 1.21711 1.40432 0.94799 1.01253 0.93049 1.25798 0.94732 1.03451 0.94956 1.70033 1.42854 1.38038 1.05719 0.85562 0.78302 0.79530 0.77997 1.18268 1.20296 1.20781 1.21367 0.81311 0.77900 0.91332 1.90705 1.53634 1.57899 1.44322 1.22114 0.96439 1.04375 0.94416 1.20652 0.95123 0.88886 0.90367 0.93693 1.22067 1.01104 1.03248 0.94155 1.45829 1.13364 1.31687 1.44505 1.21177 0.82417 0.85990 0.80296 1.90631 1.38836 1.51504 1.66297 1.21350 0.98055 0.97198 0.94980 1.21440 0.97909 0.98845 0.96109 1.21519 0.97266 0.97938 0.98188 1.21594 0.94724 1.01723 0.98088 1.21520 0.99557 0.97764 0.95874 1.21318 0.94488 0.98861 0.98971 0.86550 0.88891 0.85941 0.91189 0.87119 0.96412 0.98814 0.92493 0.85299 0.84953 0.93788 0.89564 0.89879 0.75785 0.85424 0.95269 0.91584 0.89272 0.91937 0.89964 0.93899 0.89713 0.91068 0.91699 0.94596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.80 14.32 67.78 0.97 -2.83 16 2 C -0.18 -4.14 9.74 25.65 0.25 -3.89 16 3 C 0.13 3.75 5.65 85.63 0.48 4.23 16 4 N -0.60 -24.10 2.44 -830.51 -2.03 -26.12 16 5 C 0.27 14.40 5.16 85.63 0.44 14.85 16 6 C -0.54 -31.57 9.39 25.60 0.24 -31.32 16 7 H 0.05 2.96 7.81 -2.91 -0.02 2.93 16 8 C 0.01 0.57 5.46 84.65 0.46 1.03 16 9 N -0.93 -56.65 13.29 21.44 0.28 -56.37 16 10 Si 0.96 45.76 29.54 68.60 2.03 47.79 16 11 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 13 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 14 C 0.49 19.10 7.53 87.66 0.66 19.76 16 15 O -0.59 -29.59 14.93 -3.02 -0.05 -29.63 16 16 C -0.13 -3.21 3.80 29.85 0.11 -3.09 16 17 C 0.16 4.23 2.13 45.00 0.10 4.32 16 18 H 0.04 1.70 7.39 -2.39 -0.02 1.68 16 19 C -0.15 -2.84 9.48 71.98 0.68 -2.15 16 20 N -0.70 -19.09 4.11 -442.52 -1.82 -20.91 16 21 C 0.51 16.26 7.12 87.66 0.62 16.88 16 22 O -0.59 -24.04 15.64 -3.04 -0.05 -24.09 16 23 C -0.09 -2.27 2.53 -11.54 -0.03 -2.30 16 24 C -0.10 -2.70 5.10 30.60 0.16 -2.54 16 25 C -0.11 -2.14 5.92 30.59 0.18 -1.96 16 26 C -0.12 -2.29 5.92 30.59 0.18 -2.11 16 27 C -0.11 -1.91 5.92 30.59 0.18 -1.73 16 28 C -0.10 -2.40 4.49 30.59 0.14 -2.26 16 29 H 0.12 2.01 8.06 -2.91 -0.02 1.98 16 30 H 0.09 2.11 7.84 -2.91 -0.02 2.09 16 31 H 0.12 2.37 7.83 -2.91 -0.02 2.35 16 32 H 0.07 2.23 7.72 -2.38 -0.02 2.21 16 33 H 0.11 2.31 6.44 -2.39 -0.02 2.30 16 34 H 0.02 0.98 8.07 -2.39 -0.02 0.96 16 35 H -0.01 -0.39 7.42 -2.38 -0.02 -0.41 16 36 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 37 H 0.13 2.46 7.40 -2.39 -0.02 2.45 16 38 H 0.13 2.10 7.77 -2.39 -0.02 2.09 16 39 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.41 8.87 8.01 -92.71 -0.74 8.12 16 43 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.03 0.99 8.14 -2.38 -0.02 0.97 16 45 H 0.07 1.67 7.55 -2.38 -0.02 1.65 16 46 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 47 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 48 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 49 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 50 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 51 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 52 H 0.06 1.59 8.10 -2.39 -0.02 1.57 16 53 H 0.04 1.10 8.10 -2.39 -0.02 1.08 16 Total: -1.00 -83.58 424.33 4.33 -79.25 By element: Atomic # 1 Polarization: 25.08 SS G_CDS: 0.12 Total: 25.20 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: 5.83 Total: 4.88 kcal Atomic # 7 Polarization: -99.84 SS G_CDS: -3.56 Total: -103.40 kcal Atomic # 8 Polarization: -53.63 SS G_CDS: -0.09 Total: -53.72 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -83.58 4.33 -79.25 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292287153.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.678 kcal (2) G-P(sol) polarization free energy of solvation -83.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds