Wall clock time and date at job start Tue Mar 31 2020 19:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50699 * 119.99865 * 2 1 4 4 N 1.46494 * 109.47528 * 124.99662 * 3 2 1 5 5 C 1.46497 * 120.00130 * 270.00191 * 4 3 2 6 6 C 1.50703 * 109.46987 * 269.99459 * 5 4 3 7 7 H 1.08003 * 120.00123 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00195 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99841 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00030 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47058 * 0.02562 * 10 8 6 12 12 H 1.48493 * 109.47269 * 120.00203 * 10 8 6 13 13 H 1.48506 * 109.47023 * 240.00321 * 10 8 6 14 14 C 1.34784 * 120.00111 * 89.99123 * 4 3 2 15 15 O 1.21280 * 120.00110 * 180.02562 * 14 4 3 16 16 C 1.50699 * 119.99691 * 0.02562 * 14 4 3 17 17 C 1.53004 * 109.46636 * 179.97438 * 16 14 4 18 18 H 1.08997 * 109.47451 * 55.00332 * 17 16 14 19 19 C 1.53005 * 109.46705 * 174.99847 * 17 16 14 20 20 N 1.46494 * 109.46982 * 294.99501 * 17 16 14 21 21 C 1.34784 * 119.99635 * 155.00372 * 20 17 16 22 22 O 1.21279 * 119.99925 * 359.97438 * 21 20 17 23 23 C 1.50700 * 119.99961 * 180.02562 * 21 20 17 24 24 C 1.53003 * 109.46986 * 300.00090 * 23 21 20 25 25 C 1.53005 * 109.47219 * 180.02562 * 24 23 21 26 26 C 1.52994 * 109.46906 * 59.99762 * 25 24 23 27 27 C 1.52998 * 109.47366 * 299.99803 * 26 25 24 28 28 C 1.52992 * 109.47257 * 180.02562 * 23 21 20 29 29 H 1.07997 * 120.00294 * 179.97438 * 1 2 3 30 30 H 1.08005 * 119.99925 * 0.02562 * 1 2 3 31 31 H 1.07991 * 119.99877 * 179.97438 * 2 1 3 32 32 H 1.09000 * 109.47187 * 4.99453 * 3 2 1 33 33 H 1.09001 * 109.46976 * 244.99878 * 3 2 1 34 34 H 1.09003 * 109.47336 * 29.99358 * 5 4 3 35 35 H 1.09003 * 109.47462 * 149.99970 * 5 4 3 36 36 H 0.97006 * 119.99718 * 179.97438 * 9 8 6 37 37 H 1.09002 * 109.47418 * 59.99392 * 16 14 4 38 38 H 1.09001 * 109.46692 * 299.99243 * 16 14 4 39 39 H 1.08997 * 109.47041 * 180.02562 * 19 17 16 40 40 H 1.09005 * 109.46855 * 299.99723 * 19 17 16 41 41 H 1.08996 * 109.47503 * 59.99963 * 19 17 16 42 42 H 0.96995 * 120.00292 * 335.27805 * 20 17 16 43 43 H 1.08997 * 109.47392 * 59.99562 * 23 21 20 44 44 H 1.09005 * 109.46932 * 299.99942 * 24 23 21 45 45 H 1.08998 * 109.47453 * 59.99968 * 24 23 21 46 46 H 1.09000 * 109.46608 * 299.99989 * 25 24 23 47 47 H 1.08999 * 109.46783 * 179.97438 * 25 24 23 48 48 H 1.09005 * 109.46734 * 180.02562 * 26 25 24 49 49 H 1.08992 * 109.47456 * 60.00368 * 26 25 24 50 50 H 1.09000 * 109.47603 * 300.00663 * 27 26 25 51 51 H 1.08998 * 109.47444 * 180.02562 * 27 26 25 52 52 H 1.09004 * 109.47330 * 299.99977 * 28 23 21 53 53 H 1.09005 * 109.47124 * 59.99773 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5587 1.8651 2.4248 6 6 2.8441 3.3438 2.4803 7 1 3.3032 3.8373 1.6363 8 6 2.5183 4.0670 3.6080 9 7 1.9588 3.4663 4.6354 10 14 2.8714 5.9001 3.6764 11 1 3.4994 6.3312 2.4016 12 1 1.6008 6.6418 3.8774 13 1 3.7945 6.1846 4.8045 14 6 4.2497 0.8662 0.9825 15 8 5.0196 0.8881 1.9193 16 6 4.6972 0.3182 -0.3481 17 6 6.1537 -0.1395 -0.2472 18 1 6.2550 -0.8511 0.5722 19 6 6.5697 -0.8091 -1.5585 20 7 7.0135 1.0197 0.0034 21 6 8.2036 0.8563 0.6147 22 8 8.5624 -0.2503 0.9576 23 6 9.0880 2.0489 0.8731 24 6 9.4439 2.7174 -0.4564 25 6 10.3423 3.9279 -0.1941 26 6 11.6235 3.4700 0.5056 27 6 11.2676 2.8015 1.8350 28 6 10.3695 1.5915 1.5725 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9354 -0.0004 31 1 1.8500 -0.9352 0.0004 32 1 1.3585 2.1316 0.0895 33 1 2.6213 1.4026 -0.9314 34 1 1.4886 1.6968 2.5458 35 1 3.0988 1.3606 3.2260 36 1 1.7299 3.9751 5.4290 37 1 4.6125 1.0950 -1.1081 38 1 4.0680 -0.5286 -0.6223 39 1 7.6072 -1.1356 -1.4866 40 1 5.9299 -1.6717 -1.7450 41 1 6.4684 -0.0977 -2.3780 42 1 6.7247 1.9053 -0.2669 43 1 8.5613 2.7611 1.5082 44 1 9.9707 2.0053 -1.0916 45 1 8.5311 3.0433 -0.9551 46 1 9.8159 4.6401 0.4413 47 1 10.5962 4.4038 -1.1413 48 1 12.2633 4.3324 0.6928 49 1 12.1499 2.7578 -0.1298 50 1 10.7412 3.5137 2.4704 51 1 12.1804 2.4757 2.3337 52 1 10.1164 1.1149 2.5196 53 1 10.8961 0.8796 0.9368 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292287158.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:47 Heat of formation + Delta-G solvation = -106.187926 kcal Electronic energy + Delta-G solvation = -30427.184892 eV Core-core repulsion = 26490.074031 eV Total energy + Delta-G solvation = -3937.110861 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.40880 -40.58320 -38.62185 -37.31150 -36.55830 -35.09859 -33.63543 -33.15825 -31.67391 -31.36913 -30.13207 -28.39088 -26.81376 -25.17489 -24.57919 -23.49678 -22.30704 -21.38240 -21.11170 -20.59425 -19.87984 -18.62751 -18.20547 -17.79879 -17.42558 -17.09947 -16.33138 -16.24008 -16.02019 -15.79888 -15.44345 -15.10567 -15.01352 -14.74809 -14.56586 -14.36150 -14.15293 -13.89604 -13.80429 -13.37501 -13.28115 -13.24690 -13.10789 -12.98870 -12.93940 -12.76886 -12.71857 -12.58987 -12.23282 -12.21993 -12.15240 -12.06265 -11.92537 -11.63390 -11.54569 -11.36680 -11.02275 -10.65589 -10.58040 -10.55576 -10.28767 -9.97266 -9.41781 -8.21752 -6.36544 1.34694 1.36544 1.38240 1.49731 1.72677 1.90217 2.31804 2.34482 2.52311 3.08416 3.61648 3.68609 3.70941 3.77967 3.80275 4.10079 4.18473 4.23490 4.27317 4.28136 4.34006 4.43306 4.44636 4.53724 4.55265 4.57927 4.64051 4.68047 4.71344 4.83803 4.88709 4.94767 5.03921 5.08137 5.10728 5.11169 5.15742 5.22919 5.24275 5.24423 5.33764 5.34756 5.37615 5.53697 5.54334 5.63235 5.73907 5.78136 5.98795 6.07341 6.60475 6.72164 6.83515 7.30149 7.34352 7.54399 8.85653 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.008696 B = 0.003819 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3218.973177 B = 7330.562633 C = 9683.524268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.183 4.183 3 C 0.133 3.867 4 N -0.599 5.599 5 C 0.266 3.734 6 C -0.535 4.535 7 H 0.059 0.941 8 C 0.005 3.995 9 N -0.932 5.932 10 Si 0.966 3.034 11 H -0.260 1.260 12 H -0.272 1.272 13 H -0.286 1.286 14 C 0.492 3.508 15 O -0.588 6.588 16 C -0.134 4.134 17 C 0.155 3.845 18 H 0.049 0.951 19 C -0.147 4.147 20 N -0.705 5.705 21 C 0.517 3.483 22 O -0.590 6.590 23 C -0.106 4.106 24 C -0.101 4.101 25 C -0.117 4.117 26 C -0.117 4.117 27 C -0.118 4.118 28 C -0.095 4.095 29 H 0.114 0.886 30 H 0.097 0.903 31 H 0.116 0.884 32 H 0.073 0.927 33 H 0.115 0.885 34 H 0.015 0.985 35 H -0.011 1.011 36 H 0.265 0.735 37 H 0.130 0.870 38 H 0.133 0.867 39 H 0.043 0.957 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.405 0.595 43 H 0.088 0.912 44 H 0.069 0.931 45 H 0.078 0.922 46 H 0.061 0.939 47 H 0.084 0.916 48 H 0.075 0.925 49 H 0.066 0.934 50 H 0.059 0.941 51 H 0.072 0.928 52 H 0.040 0.960 53 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.971 -1.646 -18.863 21.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.202 4.202 3 C 0.011 3.989 4 N -0.330 5.330 5 C 0.144 3.856 6 C -0.574 4.574 7 H 0.077 0.923 8 C -0.193 4.193 9 N -0.572 5.572 10 Si 0.791 3.209 11 H -0.184 1.184 12 H -0.197 1.197 13 H -0.212 1.212 14 C 0.281 3.719 15 O -0.469 6.469 16 C -0.173 4.173 17 C 0.050 3.950 18 H 0.067 0.933 19 C -0.205 4.205 20 N -0.355 5.355 21 C 0.305 3.695 22 O -0.471 6.471 23 C -0.127 4.127 24 C -0.138 4.138 25 C -0.155 4.155 26 C -0.155 4.155 27 C -0.155 4.155 28 C -0.133 4.133 29 H 0.132 0.868 30 H 0.115 0.885 31 H 0.134 0.866 32 H 0.092 0.908 33 H 0.133 0.867 34 H 0.033 0.967 35 H 0.007 0.993 36 H 0.074 0.926 37 H 0.148 0.852 38 H 0.151 0.849 39 H 0.062 0.938 40 H 0.104 0.896 41 H 0.102 0.898 42 H 0.241 0.759 43 H 0.106 0.894 44 H 0.088 0.912 45 H 0.096 0.904 46 H 0.080 0.920 47 H 0.102 0.898 48 H 0.094 0.906 49 H 0.085 0.915 50 H 0.077 0.923 51 H 0.090 0.910 52 H 0.059 0.941 53 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.515 -2.381 -17.977 20.962 hybrid contribution -0.482 0.935 1.199 1.595 sum 10.033 -1.446 -16.778 19.603 Atomic orbital electron populations 1.24036 0.95762 1.02692 0.98734 1.23387 0.96738 0.98585 1.01494 1.20846 0.92763 0.95982 0.89314 1.48218 1.11888 1.60037 1.12836 1.18621 0.93433 0.92813 0.80736 1.21736 1.40129 0.94213 1.01320 0.92283 1.25880 0.94769 1.03729 0.94941 1.70080 1.43158 1.38061 1.05874 0.85388 0.78104 0.79115 0.78340 1.18393 1.19701 1.21173 1.21390 0.81366 0.77764 0.91363 1.90699 1.53898 1.57935 1.44351 1.22122 0.96310 1.04682 0.94224 1.20683 0.87973 0.87951 0.98407 0.93276 1.22066 1.01498 1.01584 0.95386 1.45874 1.18287 1.11157 1.60179 1.21038 0.82227 0.90668 0.75555 1.90615 1.74771 1.28547 1.53168 1.21377 0.95959 0.94877 1.00483 1.21497 1.00926 0.97774 0.93635 1.21552 0.95770 0.96629 1.01524 1.21551 0.97555 1.00622 0.95749 1.21553 0.99184 0.96345 0.98449 1.21267 0.94407 0.98165 0.99476 0.86828 0.88498 0.86580 0.90809 0.86715 0.96669 0.99267 0.92606 0.85234 0.84901 0.93813 0.89602 0.89804 0.75941 0.89426 0.91242 0.90361 0.91983 0.89781 0.90588 0.91532 0.92251 0.90955 0.94093 0.91881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.98 14.32 67.78 0.97 -3.01 16 2 C -0.18 -4.52 9.74 25.64 0.25 -4.27 16 3 C 0.13 3.78 5.65 85.63 0.48 4.26 16 4 N -0.60 -24.08 2.44 -830.50 -2.03 -26.11 16 5 C 0.27 14.23 5.16 85.63 0.44 14.68 16 6 C -0.54 -30.18 9.39 25.60 0.24 -29.94 16 7 H 0.06 3.22 7.81 -2.91 -0.02 3.20 16 8 C 0.01 0.31 5.46 84.66 0.46 0.77 16 9 N -0.93 -56.77 13.29 21.45 0.28 -56.49 16 10 Si 0.97 44.24 29.54 68.60 2.03 46.27 16 11 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 12 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 13 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 14 C 0.49 19.12 7.53 87.66 0.66 19.78 16 15 O -0.59 -29.86 14.93 -3.03 -0.05 -29.91 16 16 C -0.13 -3.18 3.79 29.85 0.11 -3.07 16 17 C 0.16 4.20 2.14 45.00 0.10 4.29 16 18 H 0.05 1.79 7.39 -2.39 -0.02 1.77 16 19 C -0.15 -2.79 9.48 71.98 0.68 -2.11 16 20 N -0.71 -20.06 4.11 -442.53 -1.82 -21.88 16 21 C 0.52 16.99 7.12 87.66 0.62 17.62 16 22 O -0.59 -24.04 15.64 -3.03 -0.05 -24.09 16 23 C -0.11 -2.78 2.53 -11.54 -0.03 -2.81 16 24 C -0.10 -1.86 5.10 30.60 0.16 -1.70 16 25 C -0.12 -1.82 5.92 30.59 0.18 -1.64 16 26 C -0.12 -1.83 5.92 30.59 0.18 -1.65 16 27 C -0.12 -2.34 5.92 30.58 0.18 -2.15 16 28 C -0.10 -2.48 4.49 30.58 0.14 -2.35 16 29 H 0.11 2.14 8.06 -2.91 -0.02 2.12 16 30 H 0.10 2.23 7.84 -2.91 -0.02 2.21 16 31 H 0.12 2.59 7.83 -2.91 -0.02 2.57 16 32 H 0.07 2.28 7.72 -2.39 -0.02 2.26 16 33 H 0.12 2.28 6.44 -2.39 -0.02 2.26 16 34 H 0.02 0.85 8.07 -2.39 -0.02 0.83 16 35 H -0.01 -0.69 7.42 -2.39 -0.02 -0.70 16 36 H 0.27 15.16 8.31 -92.70 -0.77 14.39 16 37 H 0.13 2.17 7.40 -2.39 -0.02 2.15 16 38 H 0.13 2.37 7.78 -2.39 -0.02 2.35 16 39 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 41 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.41 9.90 8.03 -92.71 -0.74 9.15 16 43 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 44 H 0.07 1.25 8.14 -2.38 -0.02 1.24 16 45 H 0.08 1.25 7.57 -2.39 -0.02 1.23 16 46 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 49 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 50 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 51 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 52 H 0.04 1.27 8.10 -2.38 -0.02 1.25 16 53 H 0.06 1.67 8.10 -2.38 -0.02 1.65 16 Total: -1.00 -81.73 424.37 4.33 -77.40 By element: Atomic # 1 Polarization: 27.98 SS G_CDS: 0.12 Total: 28.10 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: 5.83 Total: 6.70 kcal Atomic # 7 Polarization: -100.92 SS G_CDS: -3.56 Total: -104.48 kcal Atomic # 8 Polarization: -53.90 SS G_CDS: -0.09 Total: -54.00 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -81.73 4.33 -77.40 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292287158.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.784 kcal (2) G-P(sol) polarization free energy of solvation -81.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds