Wall clock time and date at job start Tue Mar 31 2020 20:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50702 * 120.00136 * 2 1 4 4 N 1.46504 * 109.46822 * 125.74800 * 3 2 1 5 5 C 1.46497 * 120.00208 * 86.23806 * 4 3 2 6 6 C 1.50701 * 109.47133 * 92.14886 * 5 4 3 7 7 H 1.07999 * 119.99792 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00177 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99857 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00102 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.46846 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47161 * 120.00065 * 10 8 6 13 13 H 1.48503 * 109.46888 * 240.00284 * 10 8 6 14 14 C 1.34776 * 119.99836 * 266.24022 * 4 3 2 15 15 O 1.21283 * 120.00057 * 356.04398 * 14 4 3 16 16 C 1.50697 * 120.00040 * 176.05224 * 14 4 3 17 17 H 1.08997 * 109.47015 * 327.43558 * 16 14 4 18 18 C 1.53006 * 109.47119 * 87.43546 * 16 14 4 19 19 N 1.46501 * 109.47505 * 207.43422 * 16 14 4 20 20 C 1.34768 * 120.00257 * 155.00039 * 19 16 14 21 21 O 1.21283 * 119.99943 * 359.97438 * 20 19 16 22 22 C 1.50697 * 120.00172 * 180.02562 * 20 19 16 23 23 C 1.53000 * 109.47566 * 179.97438 * 22 20 19 24 24 C 1.53006 * 109.47032 * 295.00168 * 23 22 20 25 25 C 1.53003 * 109.46986 * 179.97438 * 24 23 22 26 26 C 1.53005 * 109.46938 * 60.00189 * 25 24 23 27 27 C 1.53002 * 109.46624 * 299.99633 * 26 25 24 28 28 C 1.52997 * 109.47398 * 60.00648 * 27 26 25 29 29 H 1.08005 * 119.99391 * 5.08827 * 1 2 3 30 30 H 1.07992 * 120.00298 * 185.09003 * 1 2 3 31 31 H 1.08000 * 119.99722 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.47143 * 5.75083 * 3 2 1 33 33 H 1.08994 * 109.47069 * 245.74141 * 3 2 1 34 34 H 1.09000 * 109.47361 * 212.15036 * 5 4 3 35 35 H 1.09005 * 109.47080 * 332.15262 * 5 4 3 36 36 H 0.97000 * 120.00019 * 180.02562 * 9 8 6 37 37 H 1.09004 * 109.47149 * 186.37531 * 18 16 14 38 38 H 1.09000 * 109.46712 * 306.37351 * 18 16 14 39 39 H 1.08999 * 109.47059 * 66.37130 * 18 16 14 40 40 H 0.97004 * 119.99841 * 335.00089 * 19 16 14 41 41 H 1.09005 * 109.47255 * 300.00073 * 22 20 19 42 42 H 1.09006 * 109.47196 * 59.99434 * 22 20 19 43 43 H 1.09000 * 109.46925 * 54.99456 * 23 22 20 44 44 H 1.09002 * 109.46842 * 299.99952 * 24 23 22 45 45 H 1.09002 * 109.47110 * 59.99547 * 24 23 22 46 46 H 1.08993 * 109.46819 * 299.99986 * 25 24 23 47 47 H 1.08997 * 109.46470 * 179.97438 * 25 24 23 48 48 H 1.09003 * 109.46710 * 179.97438 * 26 25 24 49 49 H 1.08993 * 109.47103 * 59.99589 * 26 25 24 50 50 H 1.08993 * 109.47345 * 299.99808 * 27 26 25 51 51 H 1.09002 * 109.46606 * 180.02562 * 27 26 25 52 52 H 1.08994 * 109.47361 * 179.97438 * 28 27 26 53 53 H 1.09005 * 109.47192 * 59.99157 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 3.0066 1.3244 1.1210 5 6 4.3426 0.7443 0.9645 6 6 5.3068 1.8153 0.5235 7 1 4.9590 2.8268 0.3744 8 6 6.6329 1.5038 0.3105 9 7 7.0563 0.2719 0.4917 10 14 7.8282 2.8316 -0.2354 11 1 7.1070 4.1230 -0.3671 12 1 8.9099 2.9686 0.7726 13 1 8.4175 2.4584 -1.5464 14 6 2.6449 1.8759 2.2964 15 8 1.5662 2.4198 2.4046 16 6 3.5807 1.8170 3.4761 17 1 4.1589 0.8939 3.4354 18 6 4.5304 3.0160 3.4341 19 7 2.8042 1.8525 4.7178 20 6 3.3148 1.3234 5.8473 21 8 4.4170 0.8175 5.8356 22 6 2.5158 1.3594 7.1245 23 6 3.3177 0.6972 8.2467 24 6 3.5079 -0.7876 7.9299 25 6 4.3104 -1.4496 9.0519 26 6 3.5549 -1.3030 10.3743 27 6 3.3647 0.1818 10.6909 28 6 2.5622 0.8438 9.5691 29 1 -0.5399 0.9317 -0.0830 30 1 -0.5400 -0.9315 0.0830 31 1 1.8500 -0.9353 -0.0004 32 1 1.3598 2.1310 0.1030 33 1 2.6109 1.4086 -0.9369 34 1 4.6721 0.3285 1.9167 35 1 4.3099 -0.0462 0.2147 36 1 7.9893 0.0529 0.3422 37 1 5.2787 2.9145 4.2202 38 1 5.0256 3.0533 2.4638 39 1 3.9635 3.9341 3.5883 40 1 1.9225 2.2568 4.7271 41 1 2.3035 2.3947 7.3913 42 1 1.5784 0.8215 6.9820 43 1 4.2920 1.1786 8.3298 44 1 2.5335 -1.2691 7.8467 45 1 4.0464 -0.8921 6.9880 46 1 5.2846 -0.9680 9.1346 47 1 4.4455 -2.5074 8.8264 48 1 4.1264 -1.7751 11.1735 49 1 2.5806 -1.7845 10.2914 50 1 4.3390 0.6633 10.7738 51 1 2.8269 0.2863 11.6332 52 1 2.4264 1.9014 9.7949 53 1 1.5879 0.3622 9.4862 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292529781.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:05 Heat of formation + Delta-G solvation = -99.792875 kcal Electronic energy + Delta-G solvation = -30270.119183 eV Core-core repulsion = 26333.285632 eV Total energy + Delta-G solvation = -3936.833551 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.56977 -40.58801 -38.99256 -37.24980 -36.10593 -35.09073 -33.98149 -33.65051 -31.63966 -31.53703 -29.37208 -28.00876 -27.56952 -25.11811 -24.64595 -23.46521 -22.58407 -21.24474 -20.93661 -20.57450 -20.15537 -18.62167 -18.50008 -17.85216 -17.24386 -16.59597 -16.55322 -16.24596 -16.16980 -15.95193 -15.42277 -15.11011 -14.94026 -14.90282 -14.59549 -14.51180 -14.32795 -14.19823 -13.68714 -13.44667 -13.34318 -13.20720 -13.01646 -12.92981 -12.89186 -12.77431 -12.70323 -12.51179 -12.37540 -12.22666 -11.97377 -11.94467 -11.80975 -11.67306 -11.30090 -11.23476 -10.92225 -10.87763 -10.59814 -10.55444 -10.33216 -10.08416 -9.57077 -8.21661 -6.34583 1.21220 1.39862 1.42977 1.51723 1.56132 1.70426 2.00340 2.38785 2.58388 3.09734 3.52653 3.72229 3.78216 3.86734 4.01511 4.04593 4.12520 4.21401 4.23821 4.28461 4.36111 4.50981 4.52278 4.59429 4.63695 4.70378 4.73852 4.77302 4.78538 4.80580 4.86420 4.88267 4.90368 5.00804 5.08103 5.18895 5.21989 5.25926 5.29489 5.33840 5.36572 5.41821 5.46140 5.58976 5.61552 5.65931 5.66216 5.73098 5.83063 6.01624 6.45003 6.57533 6.76528 7.13509 7.30493 7.36255 8.84836 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.010408 B = 0.003134 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2689.595580 B = 8932.713547 C =10428.729640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.187 4.187 3 C 0.140 3.860 4 N -0.588 5.588 5 C 0.249 3.751 6 C -0.536 4.536 7 H 0.061 0.939 8 C 0.022 3.978 9 N -0.919 5.919 10 Si 0.953 3.047 11 H -0.264 1.264 12 H -0.282 1.282 13 H -0.279 1.279 14 C 0.518 3.482 15 O -0.578 6.578 16 C 0.137 3.863 17 H 0.085 0.915 18 C -0.151 4.151 19 N -0.710 5.710 20 C 0.506 3.494 21 O -0.574 6.574 22 C -0.127 4.127 23 C -0.068 4.068 24 C -0.121 4.121 25 C -0.119 4.119 26 C -0.116 4.116 27 C -0.119 4.119 28 C -0.108 4.108 29 H 0.104 0.896 30 H 0.117 0.883 31 H 0.103 0.897 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.022 0.978 35 H 0.025 0.975 36 H 0.267 0.733 37 H 0.057 0.943 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.414 0.586 41 H 0.120 0.880 42 H 0.114 0.886 43 H 0.055 0.945 44 H 0.063 0.937 45 H 0.046 0.954 46 H 0.047 0.953 47 H 0.056 0.944 48 H 0.065 0.935 49 H 0.067 0.933 50 H 0.053 0.947 51 H 0.077 0.923 52 H 0.075 0.925 53 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.033 0.449 14.850 19.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.206 4.206 3 C 0.018 3.982 4 N -0.317 5.317 5 C 0.128 3.872 6 C -0.575 4.575 7 H 0.079 0.921 8 C -0.178 4.178 9 N -0.558 5.558 10 Si 0.778 3.222 11 H -0.188 1.188 12 H -0.208 1.208 13 H -0.204 1.204 14 C 0.306 3.694 15 O -0.460 6.460 16 C 0.029 3.971 17 H 0.103 0.897 18 C -0.210 4.210 19 N -0.364 5.364 20 C 0.295 3.705 21 O -0.454 6.454 22 C -0.166 4.166 23 C -0.087 4.087 24 C -0.159 4.159 25 C -0.156 4.156 26 C -0.153 4.153 27 C -0.157 4.157 28 C -0.146 4.146 29 H 0.122 0.878 30 H 0.135 0.865 31 H 0.121 0.879 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.040 0.960 35 H 0.043 0.957 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.251 0.749 41 H 0.138 0.862 42 H 0.132 0.868 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.065 0.935 46 H 0.066 0.934 47 H 0.075 0.925 48 H 0.084 0.916 49 H 0.086 0.914 50 H 0.072 0.928 51 H 0.096 0.904 52 H 0.094 0.906 53 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.636 0.247 14.844 18.863 hybrid contribution 1.030 0.363 -0.884 1.405 sum -10.606 0.610 13.961 17.543 Atomic orbital electron populations 1.23989 0.94960 1.02970 0.97983 1.23244 0.96897 0.98192 1.02245 1.20515 0.91894 0.96302 0.89469 1.48135 1.15764 1.56493 1.11327 1.19173 0.77411 0.93690 0.96892 1.21577 0.93624 0.95839 1.46443 0.92061 1.25641 0.99801 0.97276 0.95108 1.70027 1.16879 1.19705 1.49172 0.85579 0.78957 0.79722 0.77943 1.18832 1.20770 1.20420 1.20520 0.86556 0.77583 0.84742 1.90548 1.24633 1.46339 1.84488 1.20510 0.91885 1.01658 0.83058 0.89691 1.22072 0.98593 0.95964 1.04349 1.45925 1.21639 1.61019 1.07861 1.21553 0.86880 0.76193 0.85887 1.90697 1.22660 1.45963 1.86042 1.21817 0.99596 1.05226 0.89979 1.20881 0.98554 0.95310 0.93964 1.21671 1.00186 0.95480 0.98517 1.21499 0.98676 0.99917 0.95530 1.21533 1.00528 0.97017 0.96237 1.21531 1.00306 0.95251 0.98564 1.21568 0.98859 1.01523 0.92608 0.87818 0.86520 0.87942 0.89863 0.89900 0.96005 0.95733 0.92412 0.92362 0.89927 0.91511 0.74861 0.86182 0.86799 0.92610 0.91803 0.93549 0.93391 0.92481 0.91611 0.91412 0.92780 0.90444 0.90611 0.90712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.15 14.31 67.78 0.97 -3.18 16 2 C -0.19 -5.87 9.85 25.64 0.25 -5.61 16 3 C 0.14 5.03 5.91 85.63 0.51 5.54 16 4 N -0.59 -24.49 2.44 -830.50 -2.03 -26.52 16 5 C 0.25 11.96 5.00 85.63 0.43 12.38 16 6 C -0.54 -27.29 7.16 25.60 0.18 -27.10 16 7 H 0.06 3.11 7.47 -2.91 -0.02 3.09 16 8 C 0.02 1.18 5.46 84.65 0.46 1.64 16 9 N -0.92 -51.35 13.29 21.45 0.28 -51.06 16 10 Si 0.95 41.81 29.54 68.60 2.03 43.84 16 11 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 12 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 13 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 14 C 0.52 21.05 6.85 87.66 0.60 21.65 16 15 O -0.58 -23.65 15.55 -3.04 -0.05 -23.69 16 16 C 0.14 5.37 2.29 44.25 0.10 5.47 16 17 H 0.09 3.87 5.49 -2.39 -0.01 3.86 16 18 C -0.15 -5.85 9.45 71.98 0.68 -5.17 16 19 N -0.71 -22.49 5.06 -446.10 -2.26 -24.75 16 20 C 0.51 15.59 7.51 87.66 0.66 16.25 16 21 O -0.57 -22.86 13.63 -3.04 -0.04 -22.90 16 22 C -0.13 -2.53 5.18 29.85 0.15 -2.37 16 23 C -0.07 -1.43 1.84 -10.79 -0.02 -1.45 16 24 C -0.12 -2.93 4.94 30.60 0.15 -2.78 16 25 C -0.12 -2.55 5.92 30.60 0.18 -2.37 16 26 C -0.12 -1.85 5.92 30.60 0.18 -1.67 16 27 C -0.12 -1.73 5.92 30.59 0.18 -1.55 16 28 C -0.11 -1.57 5.21 30.59 0.16 -1.41 16 29 H 0.10 2.51 7.86 -2.91 -0.02 2.49 16 30 H 0.12 2.47 8.06 -2.91 -0.02 2.44 16 31 H 0.10 3.31 8.06 -2.91 -0.02 3.29 16 32 H 0.08 2.92 6.93 -2.39 -0.02 2.90 16 33 H 0.08 2.96 8.10 -2.39 -0.02 2.95 16 34 H 0.02 1.15 5.86 -2.39 -0.01 1.13 16 35 H 0.02 1.24 8.06 -2.38 -0.02 1.22 16 36 H 0.27 14.20 8.31 -92.71 -0.77 13.42 16 37 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 38 H 0.08 3.58 5.27 -2.39 -0.01 3.57 16 39 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.41 11.39 7.81 -92.71 -0.72 10.67 16 41 H 0.12 1.77 8.14 -2.38 -0.02 1.75 16 42 H 0.11 1.81 8.14 -2.38 -0.02 1.79 16 43 H 0.06 1.43 7.96 -2.39 -0.02 1.41 16 44 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.05 1.49 5.95 -2.39 -0.01 1.48 16 46 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 48 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 49 H 0.07 0.98 8.14 -2.39 -0.02 0.97 16 50 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 51 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 52 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 53 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 Total: -1.00 -63.14 416.57 3.92 -59.22 By element: Atomic # 1 Polarization: 37.45 SS G_CDS: 0.15 Total: 37.61 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: 5.83 Total: 8.26 kcal Atomic # 7 Polarization: -98.33 SS G_CDS: -4.00 Total: -102.33 kcal Atomic # 8 Polarization: -46.51 SS G_CDS: -0.09 Total: -46.60 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Total: -63.14 3.92 -59.22 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292529781.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.578 kcal (2) G-P(sol) polarization free energy of solvation -63.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds