Wall clock time and date at job start Tue Mar 31 2020 21:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.47052 * 2 1 4 4 C 1.46505 * 119.99784 * 264.93977 * 3 2 1 5 5 C 1.50701 * 109.47207 * 275.48416 * 4 3 2 6 6 H 1.08001 * 119.99808 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99872 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99887 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47369 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47144 * 120.00382 * 9 7 5 12 12 H 1.48500 * 109.47319 * 240.00313 * 9 7 5 13 13 C 1.34782 * 120.00283 * 84.94317 * 3 2 1 14 14 O 1.21281 * 119.99679 * 4.76980 * 13 3 2 15 15 C 1.50703 * 119.99653 * 184.77297 * 13 3 2 16 16 H 1.09000 * 109.47028 * 306.82189 * 15 13 3 17 17 C 1.52996 * 109.47307 * 66.82584 * 15 13 3 18 18 C 1.53001 * 109.47240 * 179.97438 * 17 15 13 19 19 C 1.53005 * 109.47290 * 300.00436 * 18 17 15 20 20 C 1.52997 * 109.46961 * 59.99619 * 19 18 17 21 21 C 1.52996 * 109.47482 * 299.99954 * 20 19 18 22 22 H 1.09006 * 109.47368 * 300.00193 * 21 20 19 23 23 C 1.50699 * 109.47429 * 180.02562 * 21 20 19 24 24 O 1.21284 * 119.99839 * 239.99987 * 23 21 20 25 25 N 1.34773 * 119.99979 * 60.00047 * 23 21 20 26 26 C 1.47528 * 125.63391 * 0.04245 * 25 23 21 27 27 C 1.54921 * 104.78163 * 155.84559 * 26 25 23 28 28 C 1.55154 * 101.61443 * 37.00078 * 27 26 25 29 29 C 1.47020 * 125.64968 * 179.97438 * 25 23 21 30 30 H 1.09001 * 109.46947 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46913 * 300.00258 * 1 2 3 32 32 H 1.08990 * 109.47264 * 60.00359 * 1 2 3 33 33 H 1.09001 * 109.47252 * 239.99319 * 2 1 3 34 34 H 1.09005 * 109.46855 * 119.99509 * 2 1 3 35 35 H 1.09000 * 109.46739 * 35.48503 * 4 3 2 36 36 H 1.09004 * 109.46901 * 155.48984 * 4 3 2 37 37 H 0.97004 * 119.99430 * 179.97438 * 8 7 5 38 38 H 1.09006 * 109.46793 * 59.99542 * 17 15 13 39 39 H 1.08999 * 109.47063 * 299.99744 * 17 15 13 40 40 H 1.09000 * 109.47268 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.46576 * 59.99924 * 18 17 15 42 42 H 1.08997 * 109.47136 * 299.99773 * 19 18 17 43 43 H 1.08992 * 109.47046 * 179.97438 * 19 18 17 44 44 H 1.09002 * 109.47174 * 180.02562 * 20 19 18 45 45 H 1.09000 * 109.47582 * 60.00097 * 20 19 18 46 46 H 1.08994 * 110.41405 * 37.01554 * 26 25 23 47 47 H 1.08996 * 110.37422 * 274.65387 * 26 25 23 48 48 H 1.09002 * 111.00085 * 278.90794 * 27 26 25 49 49 H 1.08994 * 111.00400 * 155.09726 * 27 26 25 50 50 H 1.09006 * 110.71757 * 82.84541 * 28 27 26 51 51 H 1.08997 * 110.72129 * 205.93392 * 28 27 26 52 52 H 1.08999 * 109.88160 * 61.67876 * 29 25 23 53 53 H 1.08998 * 110.01619 * 300.58304 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3680 2.0345 -1.2639 5 6 3.7825 1.6760 -1.6401 6 1 4.3629 1.0262 -1.0019 7 6 4.3354 2.1768 -2.7996 8 7 3.6285 2.9677 -3.5770 9 14 6.0886 1.7319 -3.2664 10 1 6.6634 0.8338 -2.2327 11 1 6.0905 1.0392 -4.5799 12 1 6.9055 2.9686 -3.3579 13 6 2.1459 2.0509 1.1627 14 8 1.9398 1.4840 2.2148 15 6 2.5448 3.5042 1.1552 16 1 3.4602 3.6267 0.5763 17 6 1.4270 4.3366 0.5241 18 6 1.8316 5.8121 0.5171 19 6 2.0693 6.2827 1.9535 20 6 3.1871 5.4502 2.5845 21 6 2.7824 3.9747 2.5916 22 1 1.8669 3.8518 3.1703 23 6 3.8832 3.1548 3.2137 24 8 4.4248 2.2801 2.5714 25 7 4.2658 3.3935 4.4837 26 6 3.6944 4.4211 5.3748 27 6 3.9838 3.9073 6.8073 28 6 5.3870 3.2687 6.6326 29 6 5.3206 2.6723 5.2108 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5137 -0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.6876 1.6990 -2.0466 36 1 2.2853 3.1153 -1.1492 37 1 4.0176 3.3203 -4.3926 38 1 0.5115 4.2140 1.1031 39 1 1.2575 4.0011 -0.4990 40 1 1.0351 6.4052 0.0679 41 1 2.7471 5.9349 -0.0616 42 1 1.1538 6.1598 2.5322 43 1 2.3580 7.3336 1.9484 44 1 3.3561 5.7851 3.6079 45 1 4.1026 5.5730 2.0058 46 1 2.6201 4.5095 5.2134 47 1 4.1838 5.3810 5.2100 48 1 3.2497 3.1607 7.1103 49 1 4.0158 4.7320 7.5192 50 1 6.1668 4.0277 6.6967 51 1 5.5500 2.4869 7.3743 52 1 6.2775 2.8081 4.7070 53 1 5.0776 1.6111 5.2649 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330541979.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:43 Heat of formation + Delta-G solvation = -104.546733 kcal Electronic energy + Delta-G solvation = -32103.579781 eV Core-core repulsion = 28166.540088 eV Total energy + Delta-G solvation = -3937.039694 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.98386 -40.45550 -38.60147 -38.04454 -36.86039 -34.74291 -33.28697 -32.73292 -31.58861 -31.10552 -29.79955 -28.91266 -25.96986 -25.06432 -24.71719 -23.61197 -23.14378 -21.97567 -20.96849 -20.49000 -19.62158 -18.63395 -18.10276 -17.82713 -17.52131 -17.10560 -16.49607 -16.35635 -16.02370 -15.69304 -15.23434 -15.04977 -14.63633 -14.51197 -14.48859 -14.32983 -14.27880 -13.97708 -13.88192 -13.59619 -13.36097 -13.32330 -13.17419 -13.03858 -12.96143 -12.72090 -12.58899 -12.30623 -12.28018 -12.21300 -12.17247 -12.02889 -11.82452 -11.80143 -11.67326 -11.52221 -11.45895 -11.10678 -10.71545 -10.59038 -10.34063 -9.63067 -9.40973 -8.23028 -6.35398 1.31703 1.34039 1.46530 1.71078 1.90945 2.03214 2.33702 2.45624 3.05025 3.43477 3.54914 3.63405 3.69455 3.82145 4.01692 4.05628 4.15809 4.20123 4.28126 4.31511 4.37186 4.37878 4.39577 4.46570 4.48441 4.50445 4.51683 4.65950 4.79880 4.84635 4.85874 4.90407 4.93611 4.99187 5.00540 5.04170 5.09927 5.11806 5.14542 5.17337 5.24219 5.28240 5.28573 5.33095 5.41183 5.46363 5.55377 5.65612 5.91183 6.08081 6.53767 6.60575 6.83906 7.25805 7.31760 7.48219 8.81903 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.010568 B = 0.004211 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2648.918455 B = 6647.923464 C = 6844.997294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.110 3.890 3 N -0.604 5.604 4 C 0.243 3.757 5 C -0.548 4.548 6 H 0.032 0.968 7 C 0.028 3.972 8 N -0.912 5.912 9 Si 0.948 3.052 10 H -0.286 1.286 11 H -0.268 1.268 12 H -0.272 1.272 13 C 0.528 3.472 14 O -0.595 6.595 15 C -0.079 4.079 16 H 0.069 0.931 17 C -0.111 4.111 18 C -0.116 4.116 19 C -0.107 4.107 20 C -0.111 4.111 21 C -0.071 4.071 22 H 0.107 0.893 23 C 0.528 3.472 24 O -0.585 6.585 25 N -0.625 5.625 26 C 0.087 3.913 27 C -0.125 4.125 28 C -0.118 4.118 29 C 0.097 3.903 30 H 0.085 0.915 31 H 0.045 0.955 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.050 0.950 35 H 0.018 0.982 36 H 0.056 0.944 37 H 0.269 0.731 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.087 0.913 41 H 0.048 0.952 42 H 0.083 0.917 43 H 0.093 0.907 44 H 0.103 0.897 45 H 0.051 0.949 46 H 0.086 0.914 47 H 0.094 0.906 48 H 0.070 0.930 49 H 0.118 0.882 50 H 0.094 0.906 51 H 0.094 0.906 52 H 0.049 0.951 53 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.002 10.401 18.703 21.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.013 4.013 3 N -0.334 5.334 4 C 0.123 3.877 5 C -0.586 4.586 6 H 0.050 0.950 7 C -0.173 4.173 8 N -0.551 5.551 9 Si 0.774 3.226 10 H -0.212 1.212 11 H -0.193 1.193 12 H -0.197 1.197 13 C 0.318 3.682 14 O -0.478 6.478 15 C -0.100 4.100 16 H 0.087 0.913 17 C -0.148 4.148 18 C -0.154 4.154 19 C -0.144 4.144 20 C -0.148 4.148 21 C -0.092 4.092 22 H 0.125 0.875 23 C 0.318 3.682 24 O -0.464 6.464 25 N -0.360 5.360 26 C -0.034 4.034 27 C -0.163 4.163 28 C -0.156 4.156 29 C -0.026 4.026 30 H 0.104 0.896 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.036 0.964 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.105 0.895 41 H 0.067 0.933 42 H 0.102 0.898 43 H 0.111 0.889 44 H 0.122 0.878 45 H 0.069 0.931 46 H 0.104 0.896 47 H 0.112 0.888 48 H 0.089 0.911 49 H 0.137 0.863 50 H 0.112 0.888 51 H 0.112 0.888 52 H 0.068 0.932 53 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -3.842 9.717 18.617 21.349 hybrid contribution 1.390 -1.219 -1.054 2.128 sum -2.452 8.498 17.563 19.665 Atomic orbital electron populations 1.21961 0.93981 1.02976 1.01427 1.21299 0.95564 0.83265 1.01191 1.48177 1.63471 1.13787 1.07926 1.19377 0.93866 0.94495 0.79971 1.21667 0.99735 1.30276 1.06946 0.94989 1.25496 1.01231 0.94736 0.95787 1.69979 1.38057 1.33088 1.13976 0.85667 0.80645 0.78327 0.77991 1.21176 1.19320 1.19706 1.20697 0.75050 0.89768 0.82716 1.90493 1.54400 1.71022 1.31872 1.20997 1.00745 0.91192 0.97112 0.91284 1.21687 0.96234 0.96149 1.00735 1.21550 1.01852 0.93617 0.98367 1.21534 0.98463 0.99769 0.94627 1.21740 0.99529 0.90124 1.03440 1.21064 0.97196 0.96564 0.94382 0.87527 1.20772 0.83613 0.83178 0.80619 1.90722 1.57825 1.35040 1.62812 1.48596 1.38089 1.37425 1.11895 1.22819 0.99856 0.91299 0.89409 1.22829 0.96212 1.01926 0.95345 1.22620 0.98836 1.01471 0.92629 1.22001 0.90421 0.95949 0.94253 0.89572 0.93582 0.92413 0.91117 0.93128 0.96377 0.92606 0.92155 0.90582 0.91713 0.89460 0.93265 0.89805 0.88885 0.87831 0.93064 0.89597 0.88811 0.91110 0.86332 0.88760 0.88771 0.93225 0.94354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.01 10.20 71.98 0.73 -4.28 16 2 C 0.11 4.78 6.13 86.38 0.53 5.31 16 3 N -0.60 -29.36 2.47 -826.13 -2.04 -31.40 16 4 C 0.24 12.78 4.59 85.63 0.39 13.17 16 5 C -0.55 -32.20 9.38 25.60 0.24 -31.96 16 6 H 0.03 2.03 7.81 -2.91 -0.02 2.01 16 7 C 0.03 1.60 5.46 84.65 0.46 2.06 16 8 N -0.91 -52.07 13.29 21.45 0.28 -51.78 16 9 Si 0.95 45.85 29.54 68.60 2.03 47.88 16 10 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 11 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 12 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 13 C 0.53 25.22 5.74 87.66 0.50 25.72 16 14 O -0.60 -30.33 14.18 15.34 0.22 -30.12 16 15 C -0.08 -3.20 0.87 -11.54 -0.01 -3.21 16 16 H 0.07 3.38 7.63 -2.39 -0.02 3.36 16 17 C -0.11 -3.67 4.81 30.59 0.15 -3.52 16 18 C -0.12 -2.99 5.92 30.60 0.18 -2.81 16 19 C -0.11 -2.02 5.92 30.59 0.18 -1.84 16 20 C -0.11 -2.60 5.01 30.59 0.15 -2.44 16 21 C -0.07 -2.32 1.04 -11.54 -0.01 -2.34 16 22 H 0.11 3.27 7.73 -2.38 -0.02 3.25 16 23 C 0.53 20.74 6.27 87.66 0.55 21.29 16 24 O -0.58 -30.43 14.69 15.33 0.23 -30.20 16 25 N -0.63 -18.29 3.32 -811.54 -2.70 -20.98 16 26 C 0.09 1.48 5.14 86.84 0.45 1.92 16 27 C -0.13 -1.51 7.08 31.99 0.23 -1.29 16 28 C -0.12 -1.71 6.95 31.78 0.22 -1.49 16 29 C 0.10 2.58 6.87 86.73 0.60 3.17 16 30 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.07 3.07 8.03 -2.39 -0.02 3.06 16 34 H 0.05 2.32 7.52 -2.38 -0.02 2.30 16 35 H 0.02 0.98 8.11 -2.39 -0.02 0.97 16 36 H 0.06 2.91 3.99 -2.38 -0.01 2.90 16 37 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 38 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 39 H 0.06 2.48 5.39 -2.39 -0.01 2.47 16 40 H 0.09 1.86 8.14 -2.39 -0.02 1.85 16 41 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.10 1.73 4.99 -2.39 -0.01 1.71 16 45 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.09 1.33 7.36 -2.39 -0.02 1.31 16 47 H 0.09 1.17 7.08 -2.39 -0.02 1.15 16 48 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 49 H 0.12 0.66 8.14 -2.39 -0.02 0.65 16 50 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 51 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 52 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 53 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -80.93 402.28 4.43 -76.49 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 0.87 Total: 22.66 kcal Atomic # 6 Polarization: 11.91 SS G_CDS: 5.54 Total: 17.46 kcal Atomic # 7 Polarization: -99.71 SS G_CDS: -4.45 Total: -104.16 kcal Atomic # 8 Polarization: -60.76 SS G_CDS: 0.44 Total: -60.32 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -80.93 4.43 -76.49 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330541979.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.053 kcal (2) G-P(sol) polarization free energy of solvation -80.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds