Wall clock time and date at job start Tue Mar 31 2020 21:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.46905 * 2 1 4 4 C 1.46499 * 119.99727 * 265.18027 * 3 2 1 5 5 C 1.50702 * 109.47504 * 269.46847 * 4 3 2 6 6 H 1.08004 * 119.99529 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00492 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99614 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00183 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46862 * 59.99586 * 9 7 5 11 11 H 1.48506 * 109.47088 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.46881 * 299.99490 * 9 7 5 13 13 C 1.34779 * 120.00344 * 85.18042 * 3 2 1 14 14 O 1.21282 * 119.99619 * 3.72150 * 13 3 2 15 15 C 1.50699 * 119.99963 * 183.71644 * 13 3 2 16 16 H 1.09003 * 109.47497 * 314.80673 * 15 13 3 17 17 C 1.52997 * 109.46950 * 74.80816 * 15 13 3 18 18 C 1.52999 * 109.47151 * 179.97438 * 17 15 13 19 19 C 1.52996 * 109.47092 * 299.99592 * 18 17 15 20 20 C 1.53006 * 109.47166 * 60.00066 * 19 18 17 21 21 C 1.52998 * 109.47070 * 300.00344 * 20 19 18 22 22 H 1.08996 * 109.47245 * 179.97438 * 21 20 19 23 23 C 1.50703 * 109.47040 * 299.99760 * 21 20 19 24 24 O 1.21282 * 120.00326 * 104.44923 * 23 21 20 25 25 N 1.34782 * 119.99915 * 284.44900 * 23 21 20 26 26 C 1.47020 * 125.64762 * 4.54716 * 25 23 21 27 27 C 1.54316 * 107.27708 * 180.96563 * 26 25 23 28 28 C 1.55157 * 102.85921 * 22.52547 * 27 26 25 29 29 C 1.47424 * 125.64973 * 184.85150 * 25 23 21 30 30 H 1.09002 * 109.46672 * 60.00587 * 1 2 3 31 31 H 1.09003 * 109.46861 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47384 * 300.00173 * 1 2 3 33 33 H 1.08998 * 109.47876 * 239.99642 * 2 1 3 34 34 H 1.09009 * 109.47059 * 119.99405 * 2 1 3 35 35 H 1.09005 * 109.47367 * 29.46796 * 4 3 2 36 36 H 1.09004 * 109.47472 * 149.46963 * 4 3 2 37 37 H 0.97004 * 119.99646 * 180.02562 * 8 7 5 38 38 H 1.08995 * 109.47318 * 59.99444 * 17 15 13 39 39 H 1.09010 * 109.47142 * 299.99685 * 17 15 13 40 40 H 1.09003 * 109.47369 * 59.99813 * 18 17 15 41 41 H 1.09004 * 109.46934 * 180.02562 * 18 17 15 42 42 H 1.09004 * 109.47329 * 179.97438 * 19 18 17 43 43 H 1.09003 * 109.47194 * 300.00328 * 19 18 17 44 44 H 1.09003 * 109.46850 * 60.00052 * 20 19 18 45 45 H 1.08998 * 109.47225 * 179.97438 * 20 19 18 46 46 H 1.08998 * 109.88051 * 300.51629 * 26 25 23 47 47 H 1.09002 * 109.88381 * 61.67672 * 26 25 23 48 48 H 1.08994 * 110.92463 * 264.11078 * 27 26 25 49 49 H 1.08996 * 110.58922 * 140.77933 * 27 26 25 50 50 H 1.09003 * 111.00253 * 206.23064 * 28 27 26 51 51 H 1.09000 * 111.04012 * 82.39497 * 28 27 26 52 52 H 1.08998 * 110.36713 * 274.67689 * 29 25 23 53 53 H 1.09004 * 110.36578 * 36.99768 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3629 2.0363 -1.2643 5 6 3.8191 1.8000 -1.5719 6 1 4.4272 1.2203 -0.8933 7 6 4.3754 2.3248 -2.7191 8 7 3.6350 3.0312 -3.5452 9 14 6.1803 2.0313 -3.1007 10 1 6.4310 0.5721 -3.2154 11 1 6.5297 2.6954 -4.3823 12 1 7.0148 2.5926 -2.0083 13 6 2.1505 2.0494 1.1631 14 8 1.9299 1.4862 2.2143 15 6 2.5724 3.4961 1.1572 16 1 3.4082 3.6281 0.4701 17 6 1.3987 4.3677 0.7060 18 6 1.8268 5.8366 0.7006 19 6 2.2551 6.2481 2.1106 20 6 3.4288 5.3764 2.5620 21 6 3.0007 3.9076 2.5672 22 1 3.8369 3.2866 2.8883 23 6 1.8448 3.7246 3.5168 24 8 0.7208 3.5827 3.0837 25 7 2.0601 3.7186 4.8473 26 6 3.3488 3.9726 5.5078 27 6 3.1192 3.8370 7.0278 28 6 1.8478 2.9512 7.1073 29 6 1.0438 3.4502 5.8809 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8935 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.7506 1.6236 -2.0661 36 1 2.1784 3.1073 -1.1808 37 1 4.0263 3.4001 -4.3525 38 1 0.5629 4.2357 1.3930 39 1 1.0933 4.0743 -0.2985 40 1 2.6629 5.9690 0.0138 41 1 0.9905 6.4576 0.3796 42 1 2.5605 7.2945 2.1068 43 1 1.4190 6.1157 2.7974 44 1 4.2648 5.5088 1.8752 45 1 3.7342 5.6699 3.5663 46 1 4.0860 3.2417 5.1756 47 1 3.6923 4.9806 5.2753 48 1 2.9397 4.8110 7.4828 49 1 3.9660 3.3395 7.5005 50 1 1.3018 3.1337 8.0330 51 1 2.0995 1.8955 7.0063 52 1 0.5033 4.3639 6.1279 53 1 0.3520 2.6792 5.5416 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330541981.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:53 Heat of formation + Delta-G solvation = -99.206571 kcal Electronic energy + Delta-G solvation = -32305.578024 eV Core-core repulsion = 28368.769898 eV Total energy + Delta-G solvation = -3936.808127 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.14298 -40.36605 -38.77574 -37.47197 -36.83809 -34.72822 -33.23996 -32.75386 -31.52124 -31.09890 -29.81486 -28.87892 -25.89291 -25.02584 -24.79537 -23.53852 -23.11282 -22.04287 -21.50396 -20.18919 -19.48397 -18.61465 -17.91251 -17.76920 -17.41271 -17.19416 -16.43414 -16.22038 -16.02893 -15.60590 -15.21222 -15.09214 -14.62763 -14.50239 -14.48740 -14.24963 -14.12226 -13.98951 -13.84358 -13.48342 -13.40314 -13.29048 -13.24735 -13.09042 -12.85776 -12.77974 -12.70169 -12.51626 -12.20571 -12.16585 -12.08929 -11.93688 -11.80838 -11.75715 -11.73122 -11.60040 -11.46814 -11.03256 -10.64579 -10.35028 -10.19431 -9.50975 -9.41806 -8.18260 -6.33973 1.42870 1.43613 1.51809 1.83631 1.86415 2.14941 2.32387 2.47734 3.10713 3.49063 3.58866 3.66161 3.72194 3.82536 4.04119 4.08186 4.14403 4.22446 4.25442 4.32007 4.35197 4.37058 4.47167 4.47545 4.49596 4.54246 4.61435 4.67217 4.76966 4.82748 4.87347 4.91466 4.95018 4.95510 5.00572 5.01342 5.09186 5.12877 5.13987 5.20665 5.23263 5.25648 5.29558 5.32607 5.39509 5.51147 5.63161 5.68523 5.90363 6.08111 6.60093 6.65454 6.83765 7.32922 7.40058 7.47939 8.86878 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.012751 B = 0.004087 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.335989 B = 6848.521566 C = 7461.228479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.112 3.888 3 N -0.603 5.603 4 C 0.248 3.752 5 C -0.549 4.549 6 H 0.050 0.950 7 C 0.025 3.975 8 N -0.917 5.917 9 Si 0.956 3.044 10 H -0.275 1.275 11 H -0.280 1.280 12 H -0.267 1.267 13 C 0.520 3.480 14 O -0.588 6.588 15 C -0.079 4.079 16 H 0.094 0.906 17 C -0.123 4.123 18 C -0.111 4.111 19 C -0.113 4.113 20 C -0.105 4.105 21 C -0.082 4.082 22 H 0.087 0.913 23 C 0.555 3.445 24 O -0.566 6.566 25 N -0.628 5.628 26 C 0.087 3.913 27 C -0.119 4.119 28 C -0.125 4.125 29 C 0.101 3.899 30 H 0.050 0.950 31 H 0.088 0.912 32 H 0.034 0.966 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.012 0.988 36 H 0.041 0.959 37 H 0.268 0.732 38 H 0.087 0.913 39 H 0.044 0.956 40 H 0.062 0.938 41 H 0.069 0.931 42 H 0.092 0.908 43 H 0.047 0.953 44 H 0.086 0.914 45 H 0.095 0.905 46 H 0.061 0.939 47 H 0.087 0.913 48 H 0.096 0.904 49 H 0.099 0.901 50 H 0.107 0.893 51 H 0.064 0.936 52 H 0.072 0.928 53 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.648 6.233 18.458 19.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.011 4.011 3 N -0.334 5.334 4 C 0.128 3.872 5 C -0.588 4.588 6 H 0.068 0.932 7 C -0.176 4.176 8 N -0.556 5.556 9 Si 0.781 3.219 10 H -0.200 1.200 11 H -0.205 1.205 12 H -0.192 1.192 13 C 0.309 3.691 14 O -0.470 6.470 15 C -0.100 4.100 16 H 0.112 0.888 17 C -0.160 4.160 18 C -0.148 4.148 19 C -0.150 4.150 20 C -0.143 4.143 21 C -0.104 4.104 22 H 0.106 0.894 23 C 0.346 3.654 24 O -0.445 6.445 25 N -0.363 5.363 26 C -0.035 4.035 27 C -0.157 4.157 28 C -0.163 4.163 29 C -0.022 4.022 30 H 0.069 0.931 31 H 0.106 0.894 32 H 0.053 0.947 33 H 0.097 0.903 34 H 0.080 0.920 35 H 0.030 0.970 36 H 0.058 0.942 37 H 0.077 0.923 38 H 0.105 0.895 39 H 0.063 0.937 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.110 0.890 43 H 0.066 0.934 44 H 0.105 0.895 45 H 0.113 0.887 46 H 0.080 0.920 47 H 0.105 0.895 48 H 0.114 0.886 49 H 0.118 0.882 50 H 0.126 0.874 51 H 0.083 0.917 52 H 0.090 0.910 53 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.073 5.952 18.479 19.414 hybrid contribution 0.605 -0.730 -1.061 1.423 sum 0.532 5.222 17.418 18.192 Atomic orbital electron populations 1.21979 0.95267 1.02739 1.00744 1.21324 0.94749 0.83145 1.01895 1.48224 1.63425 1.13890 1.07825 1.19222 0.94636 0.93627 0.79759 1.21620 0.95796 1.34215 1.07135 0.93211 1.25640 1.02134 0.94362 0.95469 1.70018 1.37797 1.35061 1.12729 0.85635 0.80061 0.78429 0.77745 1.20012 1.20489 1.19230 1.20801 0.75982 0.89478 0.82818 1.90523 1.53829 1.70738 1.31897 1.21031 1.00551 0.91114 0.97325 0.88757 1.21866 0.97982 0.95387 1.00811 1.21467 1.01317 0.94210 0.97827 1.21521 0.97446 1.00291 0.95747 1.21612 0.99033 0.89884 1.03753 1.21097 0.96444 1.00343 0.92507 0.89446 1.20068 0.89818 0.73991 0.81543 1.90474 1.26600 1.51120 1.76280 1.48555 1.12178 1.70891 1.04640 1.22379 0.84929 1.01858 0.94316 1.22647 0.98515 1.01584 0.92954 1.22766 0.96727 0.99749 0.97091 1.22264 0.91797 0.99985 0.88139 0.93056 0.89355 0.94716 0.90337 0.92001 0.96960 0.94170 0.92265 0.89483 0.93719 0.91902 0.91189 0.88968 0.93434 0.89514 0.88661 0.92039 0.89539 0.88582 0.88225 0.87445 0.91674 0.90969 0.93867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.44 10.21 71.98 0.73 -4.71 16 2 C 0.11 4.64 6.11 86.38 0.53 5.16 16 3 N -0.60 -28.26 2.47 -826.12 -2.04 -30.30 16 4 C 0.25 12.64 4.68 85.63 0.40 13.04 16 5 C -0.55 -29.46 9.02 25.60 0.23 -29.23 16 6 H 0.05 2.71 7.81 -2.91 -0.02 2.69 16 7 C 0.02 1.31 5.46 84.65 0.46 1.77 16 8 N -0.92 -50.97 13.29 21.45 0.28 -50.69 16 9 Si 0.96 41.82 29.54 68.60 2.03 43.84 16 10 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 11 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 12 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 13 C 0.52 24.20 6.37 87.66 0.56 24.76 16 14 O -0.59 -29.20 13.53 16.74 0.23 -28.97 16 15 C -0.08 -3.19 1.43 -11.54 -0.02 -3.21 16 16 H 0.09 4.10 7.05 -2.39 -0.02 4.08 16 17 C -0.12 -4.83 4.61 30.59 0.14 -4.69 16 18 C -0.11 -3.44 5.92 30.59 0.18 -3.25 16 19 C -0.11 -2.87 5.70 30.59 0.17 -2.70 16 20 C -0.11 -2.60 5.37 30.60 0.16 -2.43 16 21 C -0.08 -2.74 1.71 -11.54 -0.02 -2.76 16 22 H 0.09 2.89 7.69 -2.39 -0.02 2.87 16 23 C 0.56 19.79 4.20 87.66 0.37 20.16 16 24 O -0.57 -24.67 12.16 16.74 0.20 -24.47 16 25 N -0.63 -17.53 3.33 -811.81 -2.70 -20.23 16 26 C 0.09 1.62 6.11 86.73 0.53 2.15 16 27 C -0.12 -1.44 6.95 31.78 0.22 -1.22 16 28 C -0.13 -1.96 7.08 31.98 0.23 -1.73 16 29 C 0.10 2.44 6.89 86.85 0.60 3.04 16 30 H 0.05 1.87 8.14 -2.39 -0.02 1.86 16 31 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 32 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.08 3.15 8.04 -2.39 -0.02 3.13 16 34 H 0.06 2.58 7.52 -2.38 -0.02 2.57 16 35 H 0.01 0.67 8.07 -2.38 -0.02 0.65 16 36 H 0.04 2.11 4.54 -2.38 -0.01 2.10 16 37 H 0.27 14.10 8.31 -92.71 -0.77 13.33 16 38 H 0.09 3.76 5.02 -2.40 -0.01 3.75 16 39 H 0.04 1.93 6.05 -2.38 -0.01 1.91 16 40 H 0.06 1.97 8.14 -2.39 -0.02 1.96 16 41 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 42 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 43 H 0.05 1.35 7.15 -2.39 -0.02 1.33 16 44 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.10 1.77 5.92 -2.39 -0.01 1.76 16 46 H 0.06 1.22 7.86 -2.39 -0.02 1.20 16 47 H 0.09 1.28 6.27 -2.39 -0.01 1.27 16 48 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 50 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 51 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 52 H 0.07 1.56 8.14 -2.39 -0.02 1.55 16 53 H 0.04 1.31 8.09 -2.38 -0.02 1.29 16 Total: -1.00 -71.05 396.54 4.37 -66.68 By element: Atomic # 1 Polarization: 29.09 SS G_CDS: 0.88 Total: 29.98 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: 5.48 Total: 14.16 kcal Atomic # 7 Polarization: -96.77 SS G_CDS: -4.45 Total: -101.22 kcal Atomic # 8 Polarization: -53.86 SS G_CDS: 0.43 Total: -53.43 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.84 kcal Total: -71.05 4.37 -66.68 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330541981.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.526 kcal (2) G-P(sol) polarization free energy of solvation -71.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds