Wall clock time and date at job start Tue Mar 31 2020 20:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.47283 * 2 1 4 4 N 1.46500 * 109.47357 * 239.99201 * 2 1 3 5 5 C 1.34779 * 119.99812 * 85.00481 * 4 2 1 6 6 O 1.21281 * 119.99919 * 359.97438 * 5 4 2 7 7 C 1.50690 * 120.00075 * 180.02562 * 5 4 2 8 8 C 1.53002 * 109.47190 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.46951 * 294.99611 * 8 7 5 10 10 C 1.53002 * 109.46951 * 179.97438 * 9 8 7 11 11 C 1.53000 * 109.46944 * 60.00245 * 10 9 8 12 12 C 1.52997 * 109.47097 * 299.99666 * 11 10 9 13 13 C 1.52994 * 109.46849 * 60.00555 * 12 11 10 14 14 C 1.50709 * 109.47051 * 119.99326 * 2 1 3 15 15 O 1.21284 * 119.99598 * 99.46197 * 14 2 1 16 16 N 1.34770 * 120.00169 * 279.46565 * 14 2 1 17 17 C 1.46493 * 120.00136 * 184.84757 * 16 14 2 18 18 C 1.53000 * 109.47176 * 175.40004 * 17 16 14 19 19 C 1.50700 * 115.55316 * 63.17739 * 18 17 16 20 20 H 1.07999 * 120.00362 * 265.09770 * 19 18 17 21 21 C 1.37879 * 119.99831 * 85.09680 * 19 18 17 22 22 N 1.31511 * 120.00294 * 177.43667 * 21 19 18 23 23 Si 1.86805 * 119.99926 * 357.43227 * 21 19 18 24 24 H 1.48498 * 109.46813 * 90.59113 * 23 21 19 25 25 H 1.48498 * 109.47142 * 210.58875 * 23 21 19 26 26 H 1.48502 * 109.47077 * 330.58927 * 23 21 19 27 27 C 1.52999 * 117.49867 * 277.50758 * 18 17 16 28 28 C 1.53007 * 117.50000 * 208.85020 * 18 17 16 29 29 H 1.08998 * 109.47645 * 295.49221 * 1 2 3 30 30 H 1.09007 * 109.47308 * 55.49198 * 1 2 3 31 31 H 1.08998 * 109.47130 * 175.48764 * 1 2 3 32 32 H 0.97001 * 120.00010 * 264.99997 * 4 2 1 33 33 H 1.08998 * 109.47274 * 299.99899 * 7 5 4 34 34 H 1.09002 * 109.47315 * 59.99509 * 7 5 4 35 35 H 1.08996 * 109.46963 * 55.00060 * 8 7 5 36 36 H 1.08996 * 109.47653 * 300.00026 * 9 8 7 37 37 H 1.09003 * 109.46754 * 60.00680 * 9 8 7 38 38 H 1.09006 * 109.47126 * 300.00461 * 10 9 8 39 39 H 1.09002 * 109.47210 * 180.02562 * 10 9 8 40 40 H 1.09007 * 109.46514 * 179.97438 * 11 10 9 41 41 H 1.08996 * 109.47124 * 60.00302 * 11 10 9 42 42 H 1.08993 * 109.47420 * 299.99843 * 12 11 10 43 43 H 1.09003 * 109.46754 * 179.97438 * 12 11 10 44 44 H 1.09002 * 109.47108 * 179.97438 * 13 12 11 45 45 H 1.09006 * 109.47354 * 59.99462 * 13 12 11 46 46 H 0.97003 * 119.99740 * 4.84679 * 16 14 2 47 47 H 1.08997 * 109.47179 * 295.39673 * 17 16 14 48 48 H 1.08994 * 109.47648 * 55.39950 * 17 16 14 49 49 H 0.96996 * 120.00650 * 179.97438 * 22 21 19 50 50 H 1.09005 * 117.49836 * 359.97438 * 27 18 17 51 51 H 1.09000 * 117.50277 * 145.01696 * 27 18 17 52 52 H 1.08997 * 117.49783 * 214.97844 * 28 18 17 53 53 H 1.09003 * 117.49807 * 359.97438 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6908 -1.1961 5 6 2.1472 -0.0185 -2.3571 6 8 1.8583 1.1581 -2.4118 7 6 2.6490 -0.7291 -3.5875 8 6 2.7001 0.2538 -4.7590 9 6 1.2809 0.7090 -5.1050 10 6 1.3321 1.6924 -6.2760 11 6 1.9581 1.0058 -7.4916 12 6 3.3772 0.5506 -7.1455 13 6 3.3260 -0.4328 -5.9746 14 6 2.0323 -0.7103 1.2306 15 8 2.3972 -1.8647 1.1579 16 7 2.0759 -0.0628 2.4118 17 6 2.6623 -0.7167 3.5843 18 6 2.6915 0.2673 4.7556 19 6 1.3455 0.7406 5.2407 20 1 0.9335 1.6678 4.8706 21 6 0.6400 -0.0100 6.1571 22 7 -0.5112 0.4274 6.6185 23 14 1.3193 -1.6486 6.7431 24 1 2.1540 -1.4343 7.9524 25 1 0.1950 -2.5610 7.0729 26 1 2.1487 -2.2529 5.6698 27 6 3.8531 1.2613 4.8143 28 6 3.7965 0.0908 5.7991 29 1 -0.3634 0.4423 0.9276 30 1 -0.3634 0.5822 -0.8469 31 1 -0.3633 -1.0245 -0.0808 32 1 2.2490 -1.6319 -1.1524 33 1 3.6480 -1.1217 -3.3984 34 1 1.9761 -1.5510 -3.8323 35 1 3.3017 1.1192 -4.4811 36 1 0.6793 -0.1564 -5.3828 37 1 0.8352 1.1986 -4.2391 38 1 1.9336 2.5578 -5.9977 39 1 0.3211 2.0171 -6.5223 40 1 1.9941 1.7063 -8.3259 41 1 1.3566 0.1405 -7.7698 42 1 3.9787 1.4159 -6.8673 43 1 3.8230 0.0610 -8.0114 44 1 4.3370 -0.7575 -5.7284 45 1 2.7245 -1.2982 -6.2529 46 1 1.7191 0.8362 2.4855 47 1 2.0616 -1.5851 3.8544 48 1 3.6784 -1.0356 3.3524 49 1 -1.0077 -0.1008 7.2629 50 1 4.5968 1.2140 4.0187 51 1 3.6440 2.2575 5.2041 52 1 3.5500 0.3174 6.8364 53 1 4.5024 -0.7266 5.6514 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337993182.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:36 Heat of formation + Delta-G solvation = -104.138743 kcal Electronic energy + Delta-G solvation = -29414.250648 eV Core-core repulsion = 25477.228647 eV Total energy + Delta-G solvation = -3937.022002 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.51716 -40.55093 -39.08817 -38.67325 -35.99464 -35.12854 -34.22538 -33.69882 -31.81773 -31.53020 -28.58876 -28.01899 -27.27138 -25.00640 -23.46016 -23.32942 -22.61822 -21.36442 -21.21868 -20.91757 -20.54793 -18.93587 -18.32390 -17.58436 -17.15419 -16.96994 -16.58685 -16.25058 -16.08385 -16.00033 -15.48637 -15.04255 -15.02179 -14.90036 -14.83667 -14.72717 -14.30294 -14.18357 -14.01363 -13.63461 -13.34088 -13.26267 -13.09552 -12.99713 -12.80110 -12.70801 -12.60325 -12.44024 -12.19571 -11.97851 -11.93574 -11.80386 -11.61065 -11.29382 -11.25259 -11.07110 -10.97288 -10.87758 -10.69860 -10.55765 -10.37234 -10.17074 -9.92039 -8.29794 -6.36541 1.34324 1.39804 1.46332 1.49079 1.67031 1.87050 2.36130 2.46639 3.05127 3.21546 3.61865 3.74336 3.80375 3.87416 4.00932 4.02273 4.05005 4.11562 4.28462 4.35406 4.37183 4.41060 4.50734 4.51870 4.59948 4.62313 4.65411 4.71420 4.73559 4.79950 4.82293 4.86932 4.87016 4.91078 5.08546 5.09036 5.10966 5.22920 5.27276 5.29674 5.31698 5.35664 5.38883 5.45709 5.46551 5.50757 5.60481 5.66311 5.69351 6.28439 6.52736 6.56892 6.72955 7.14516 7.24477 7.34274 8.84533 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.024892 B = 0.002066 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.601023 B =13552.371983 C =13762.374561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.134 3.866 3 H 0.109 0.891 4 N -0.711 5.711 5 C 0.513 3.487 6 O -0.569 6.569 7 C -0.131 4.131 8 C -0.068 4.068 9 C -0.119 4.119 10 C -0.119 4.119 11 C -0.118 4.118 12 C -0.120 4.120 13 C -0.111 4.111 14 C 0.508 3.492 15 O -0.578 6.578 16 N -0.696 5.696 17 C 0.162 3.838 18 C -0.041 4.041 19 C -0.478 4.478 20 H 0.046 0.954 21 C 0.027 3.973 22 N -0.943 5.943 23 Si 0.927 3.073 24 H -0.269 1.269 25 H -0.303 1.303 26 H -0.238 1.238 27 C -0.154 4.154 28 C -0.190 4.190 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.414 0.586 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.055 0.945 38 H 0.049 0.951 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.054 0.946 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.412 0.588 47 H 0.042 0.958 48 H 0.061 0.939 49 H 0.264 0.736 50 H 0.101 0.899 51 H 0.084 0.916 52 H 0.078 0.922 53 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.122 -3.084 -25.817 27.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.025 3.975 3 H 0.127 0.873 4 N -0.365 5.365 5 C 0.302 3.698 6 O -0.448 6.448 7 C -0.171 4.171 8 C -0.087 4.087 9 C -0.156 4.156 10 C -0.156 4.156 11 C -0.155 4.155 12 C -0.157 4.157 13 C -0.148 4.148 14 C 0.294 3.706 15 O -0.459 6.459 16 N -0.345 5.345 17 C 0.038 3.962 18 C -0.042 4.042 19 C -0.516 4.516 20 H 0.064 0.936 21 C -0.172 4.172 22 N -0.582 5.582 23 Si 0.753 3.247 24 H -0.194 1.194 25 H -0.230 1.230 26 H -0.161 1.161 27 C -0.191 4.191 28 C -0.228 4.228 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.252 0.748 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.091 0.909 46 H 0.248 0.752 47 H 0.060 0.940 48 H 0.080 0.920 49 H 0.073 0.927 50 H 0.120 0.880 51 H 0.102 0.898 52 H 0.096 0.904 53 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 8.056 -3.090 -25.761 27.167 hybrid contribution -0.476 -0.440 1.254 1.411 sum 7.579 -3.530 -24.507 25.894 Atomic orbital electron populations 1.22033 0.91997 1.03232 1.03722 1.20620 0.96272 0.97532 0.83047 0.87274 1.45899 1.67297 1.15051 1.08300 1.21350 0.76457 0.87095 0.84909 1.90669 1.51315 1.17551 1.85283 1.21817 1.04539 0.99850 0.90870 1.20872 0.97043 0.97161 0.93584 1.21663 0.96554 0.99201 0.98206 1.21501 1.00485 0.98137 0.95488 1.21540 0.96474 1.00392 0.97102 1.21528 0.96735 0.99120 0.98333 1.21581 1.01136 0.98324 0.93779 1.20892 0.77752 0.86675 0.85295 1.90627 1.51002 1.17997 1.86303 1.45830 1.60073 1.20013 1.08570 1.20986 0.96447 0.94532 0.84193 1.19471 0.90300 0.98927 0.95524 1.20332 1.00682 1.06905 1.23666 0.93616 1.25700 0.94676 1.00795 0.95983 1.70013 1.15979 1.40032 1.32178 0.86078 0.78059 0.80427 0.80130 1.19396 1.23015 1.16084 1.22858 1.00429 0.94356 1.01431 1.23023 1.02379 1.01516 0.95867 0.90867 0.90551 0.91704 0.74796 0.86841 0.86710 0.92426 0.91886 0.92625 0.93192 0.92295 0.91798 0.91574 0.92691 0.90881 0.90997 0.90885 0.75242 0.93967 0.92038 0.92680 0.88023 0.89758 0.90393 0.88244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.79 9.47 71.98 0.68 -3.11 16 2 C 0.13 3.54 2.97 44.25 0.13 3.67 16 3 H 0.11 2.91 7.58 -2.38 -0.02 2.89 16 4 N -0.71 -16.15 5.04 -446.09 -2.25 -18.40 16 5 C 0.51 11.36 7.51 87.65 0.66 12.02 16 6 O -0.57 -16.43 13.63 -3.03 -0.04 -16.47 16 7 C -0.13 -1.88 5.18 29.85 0.15 -1.72 16 8 C -0.07 -1.06 1.84 -10.79 -0.02 -1.08 16 9 C -0.12 -2.10 4.94 30.59 0.15 -1.95 16 10 C -0.12 -1.90 5.92 30.60 0.18 -1.72 16 11 C -0.12 -1.44 5.92 30.59 0.18 -1.26 16 12 C -0.12 -1.36 5.92 30.59 0.18 -1.18 16 13 C -0.11 -1.23 5.20 30.59 0.16 -1.07 16 14 C 0.51 16.41 7.07 87.66 0.62 17.03 16 15 O -0.58 -21.39 15.94 -3.04 -0.05 -21.44 16 16 N -0.70 -23.99 5.46 -463.08 -2.53 -26.52 16 17 C 0.16 6.29 5.14 86.38 0.44 6.73 16 18 C -0.04 -1.69 0.87 -52.93 -0.05 -1.74 16 19 C -0.48 -24.59 9.08 25.60 0.23 -24.36 16 20 H 0.05 2.59 8.06 -2.91 -0.02 2.57 16 21 C 0.03 1.47 5.47 84.66 0.46 1.93 16 22 N -0.94 -56.23 13.96 21.45 0.30 -55.93 16 23 Si 0.93 42.90 25.08 68.60 1.72 44.62 16 24 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 25 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16 26 H -0.24 -10.19 5.52 99.48 0.55 -9.64 16 27 C -0.15 -5.35 9.96 30.62 0.30 -5.04 16 28 C -0.19 -7.07 7.75 30.62 0.24 -6.83 16 29 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 31 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.41 8.67 7.74 -92.71 -0.72 7.95 16 33 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.06 1.15 7.95 -2.39 -0.02 1.13 16 36 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.06 1.31 5.95 -2.39 -0.01 1.29 16 38 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 39 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 41 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 46 H 0.41 13.64 8.27 -92.71 -0.77 12.87 16 47 H 0.04 1.84 6.21 -2.39 -0.01 1.82 16 48 H 0.06 2.21 8.10 -2.39 -0.02 2.19 16 49 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 50 H 0.10 2.99 8.14 -2.38 -0.02 2.97 16 51 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 52 H 0.08 3.12 7.51 -2.39 -0.02 3.10 16 53 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 Total: -1.00 -65.83 413.15 1.12 -64.71 By element: Atomic # 1 Polarization: 39.86 SS G_CDS: -0.75 Total: 39.11 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: 4.72 Total: -9.69 kcal Atomic # 7 Polarization: -96.37 SS G_CDS: -4.48 Total: -100.85 kcal Atomic # 8 Polarization: -37.82 SS G_CDS: -0.09 Total: -37.91 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 1.72 Total: 44.62 kcal Total: -65.83 1.12 -64.71 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337993182.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.429 kcal (2) G-P(sol) polarization free energy of solvation -65.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds