Wall clock time and date at job start Tue Mar 31 2020 20:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47459 * 2 1 4 4 N 1.46903 * 109.47125 * 240.00066 * 2 1 3 5 5 C 1.46901 * 110.99787 * 85.00165 * 4 2 1 6 6 H 1.09003 * 113.50257 * 336.09125 * 5 4 2 7 7 C 1.50953 * 114.51776 * 202.00350 * 5 4 2 8 8 H 1.08997 * 115.17844 * 172.11234 * 7 5 4 9 9 C 1.52951 * 125.64614 * 18.10793 * 7 5 4 10 10 C 1.58234 * 98.89121 * 232.49056 * 9 7 5 11 11 O 1.45663 * 105.94645 * 23.46787 * 10 9 7 12 12 C 1.39050 * 106.78446 * 12.24251 * 11 10 9 13 13 H 1.09002 * 109.46147 * 75.26078 * 12 11 10 14 14 C 1.47871 * 136.74828 * 228.99936 * 12 11 10 15 15 C 1.53421 * 118.68683 * 250.98364 * 14 12 11 16 16 C 1.55105 * 103.93824 * 115.69285 * 15 14 12 17 17 C 1.54964 * 102.88532 * 37.15823 * 16 15 14 18 18 C 1.53044 * 118.90805 * 25.02462 * 14 12 11 19 19 C 1.50701 * 109.47281 * 120.00192 * 2 1 3 20 20 O 1.21282 * 120.00302 * 119.99818 * 19 2 1 21 21 N 1.34778 * 120.00306 * 299.99939 * 19 2 1 22 22 C 1.46508 * 119.99749 * 359.97438 * 21 19 2 23 23 C 1.46490 * 120.00270 * 179.97438 * 21 19 2 24 24 C 1.50702 * 109.47012 * 90.00281 * 23 21 19 25 25 H 1.07998 * 120.00426 * 359.97438 * 24 23 21 26 26 C 1.37878 * 119.99853 * 180.02562 * 24 23 21 27 27 N 1.31515 * 120.00021 * 179.97438 * 26 24 23 28 28 Si 1.86801 * 120.00285 * 359.97438 * 26 24 23 29 29 H 1.48498 * 109.46939 * 89.99999 * 28 26 24 30 30 H 1.48498 * 109.47014 * 210.00033 * 28 26 24 31 31 H 1.48496 * 109.46731 * 329.99858 * 28 26 24 32 32 H 1.08995 * 109.47278 * 59.99571 * 1 2 3 33 33 H 1.08998 * 109.47459 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.46944 * 299.99691 * 1 2 3 35 35 H 1.00896 * 110.99846 * 321.04945 * 4 2 1 36 36 H 1.08998 * 111.34354 * 350.14371 * 9 7 5 37 37 H 1.09004 * 111.34285 * 114.86910 * 9 7 5 38 38 H 1.09000 * 109.63691 * 264.54619 * 10 9 7 39 39 H 1.08998 * 110.46897 * 142.83716 * 10 9 7 40 40 H 1.09005 * 110.53112 * 234.30263 * 15 14 12 41 41 H 1.08999 * 110.53655 * 357.07695 * 15 14 12 42 42 H 1.08997 * 110.72822 * 278.81420 * 16 15 14 43 43 H 1.08996 * 110.73183 * 155.50758 * 16 15 14 44 44 H 1.09000 * 110.48330 * 203.84138 * 17 16 15 45 45 H 1.08999 * 110.58967 * 81.26962 * 17 16 15 46 46 H 1.08997 * 110.10967 * 340.31585 * 18 14 12 47 47 H 1.08997 * 110.10406 * 101.89200 * 18 14 12 48 48 H 1.08996 * 109.47164 * 89.99576 * 22 21 19 49 49 H 1.08991 * 109.46889 * 210.00151 * 22 21 19 50 50 H 1.09003 * 109.47048 * 329.99932 * 22 21 19 51 51 H 1.09001 * 109.47544 * 209.99805 * 23 21 19 52 52 H 1.08997 * 109.47771 * 330.00327 * 23 21 19 53 53 H 0.97002 * 120.00154 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0825 0.2227 -2.3469 6 1 1.4093 1.0756 -2.2600 7 6 2.0597 -0.4588 -3.6936 8 1 1.9702 0.2095 -4.5500 9 6 1.5969 -1.8921 -3.9596 10 6 2.8679 -2.4184 -4.7416 11 8 3.9730 -1.5630 -4.3308 12 6 3.5306 -0.8355 -3.2315 13 1 3.5115 -1.4805 -2.3530 14 6 3.5255 0.5816 -2.8090 15 6 4.4502 1.0117 -1.6629 16 6 5.4408 1.9995 -2.3327 17 6 4.5435 2.7554 -3.3450 18 6 3.5792 1.6732 -3.8803 19 6 2.0323 -0.7104 1.2304 20 8 2.7296 -1.6965 1.1192 21 7 1.7068 -0.2501 2.4546 22 6 0.8650 0.9414 2.5891 23 6 2.1947 -0.9410 3.6507 24 6 3.5224 -0.3580 4.0611 25 1 3.9593 0.4464 3.4880 26 6 4.1799 -0.8524 5.1676 27 7 5.3388 -0.3440 5.5255 28 14 3.4246 -2.2442 6.1585 29 1 3.8838 -3.5465 5.6122 30 1 3.8456 -2.1266 7.5777 31 1 1.9442 -2.1659 6.0731 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 -0.3633 0.5138 0.8900 35 1 1.4495 -1.4978 -1.4101 36 1 1.4404 -2.4376 -3.0291 37 1 0.7029 -1.9111 -4.5830 38 1 2.7007 -2.3285 -5.8150 39 1 3.0756 -3.4553 -4.4775 40 1 3.8810 1.5130 -0.8800 41 1 4.9832 0.1513 -1.2582 42 1 6.2344 1.4595 -2.8489 43 1 5.8564 2.6877 -1.5967 44 1 5.1452 3.1650 -4.1564 45 1 3.9870 3.5489 -2.8461 46 1 3.9593 1.2621 -4.8155 47 1 2.5868 2.0970 -4.0336 48 1 -0.1831 0.6440 2.6222 49 1 1.1229 1.4665 3.5087 50 1 1.0289 1.6002 1.7363 51 1 1.4767 -0.8155 4.4611 52 1 2.3155 -2.0023 3.4335 53 1 5.8015 -0.6920 6.3038 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339036047.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:43 Heat of formation + Delta-G solvation = -2.298252 kcal Electronic energy + Delta-G solvation = -31610.056177 eV Core-core repulsion = 27677.450310 eV Total energy + Delta-G solvation = -3932.605867 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.27637 -40.76925 -38.62258 -37.05959 -36.55458 -35.02843 -34.42636 -31.79584 -31.03471 -29.83670 -29.21947 -27.57599 -26.97627 -25.63962 -24.90672 -23.78390 -23.25731 -21.98006 -20.53666 -20.10291 -19.45872 -19.12889 -18.02872 -17.71672 -17.10188 -16.96647 -16.58540 -16.33603 -16.28388 -15.81613 -15.54112 -15.26977 -14.89179 -14.78611 -14.42631 -14.38487 -14.17844 -13.97110 -13.69671 -13.64823 -13.39266 -13.28622 -13.11823 -12.88008 -12.60026 -12.54288 -12.51570 -12.31783 -12.29454 -12.03928 -11.99026 -11.91573 -11.79313 -11.74248 -11.67495 -11.43061 -11.27964 -10.83634 -10.61304 -10.45636 -10.02751 -9.35044 -9.13727 -8.34143 -6.38924 1.30926 1.35862 1.43867 1.90040 2.17828 2.25099 2.30443 2.93293 3.00472 3.26210 3.37266 3.65785 3.72160 3.72705 3.84847 4.06402 4.07897 4.12609 4.21003 4.32466 4.36014 4.39810 4.42640 4.54388 4.56291 4.61235 4.64185 4.72713 4.73745 4.79478 4.82398 4.84556 4.87416 4.88990 4.94519 4.96764 4.99214 5.05770 5.10810 5.16362 5.24546 5.25543 5.32744 5.33667 5.45156 5.46819 5.47715 5.64700 5.96598 6.19722 6.25736 6.33610 6.62601 6.79169 7.22559 7.53742 8.83083 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013585 B = 0.003382 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.615542 B = 8277.960873 C = 8730.613785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.085 3.915 3 H 0.110 0.890 4 N -0.662 5.662 5 C 0.096 3.904 6 H 0.101 0.899 7 C -0.173 4.173 8 H 0.137 0.863 9 C -0.133 4.133 10 C 0.047 3.953 11 O -0.396 6.396 12 C 0.031 3.969 13 H 0.076 0.924 14 C -0.045 4.045 15 C -0.103 4.103 16 C -0.130 4.130 17 C -0.115 4.115 18 C -0.093 4.093 19 C 0.500 3.500 20 O -0.581 6.581 21 N -0.609 5.609 22 C 0.075 3.925 23 C 0.226 3.774 24 C -0.534 4.534 25 H 0.025 0.975 26 C 0.009 3.991 27 N -0.947 5.947 28 Si 0.949 3.051 29 H -0.279 1.279 30 H -0.274 1.274 31 H -0.236 1.236 32 H 0.093 0.907 33 H 0.056 0.944 34 H 0.091 0.909 35 H 0.352 0.648 36 H 0.069 0.931 37 H 0.106 0.894 38 H 0.098 0.902 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.027 0.973 42 H 0.055 0.945 43 H 0.062 0.938 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.069 0.931 47 H 0.096 0.904 48 H 0.085 0.915 49 H 0.062 0.938 50 H 0.088 0.912 51 H 0.050 0.950 52 H 0.015 0.985 53 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.815 5.603 -22.030 27.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.028 4.028 3 H 0.127 0.873 4 N -0.295 5.295 5 C -0.014 4.014 6 H 0.118 0.882 7 C -0.192 4.192 8 H 0.155 0.845 9 C -0.170 4.170 10 C -0.028 4.028 11 O -0.316 6.316 12 C -0.027 4.027 13 H 0.094 0.906 14 C -0.046 4.046 15 C -0.141 4.141 16 C -0.168 4.168 17 C -0.153 4.153 18 C -0.130 4.130 19 C 0.288 3.712 20 O -0.460 6.460 21 N -0.341 5.341 22 C -0.067 4.067 23 C 0.103 3.897 24 C -0.573 4.573 25 H 0.044 0.956 26 C -0.188 4.188 27 N -0.587 5.587 28 Si 0.772 3.228 29 H -0.205 1.205 30 H -0.199 1.199 31 H -0.159 1.159 32 H 0.112 0.888 33 H 0.075 0.925 34 H 0.110 0.890 35 H 0.175 0.825 36 H 0.088 0.912 37 H 0.124 0.876 38 H 0.116 0.884 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.046 0.954 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.088 0.912 47 H 0.114 0.886 48 H 0.104 0.896 49 H 0.081 0.919 50 H 0.106 0.894 51 H 0.068 0.932 52 H 0.033 0.967 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.496 5.141 -21.874 26.740 hybrid contribution 0.073 -0.912 1.029 1.377 sum -14.423 4.229 -20.845 25.699 Atomic orbital electron populations 1.22653 0.92018 1.03534 1.05640 1.21411 0.96072 0.97707 0.87614 0.87278 1.59799 1.58295 1.09250 1.02181 1.22218 0.95638 0.95700 0.87799 0.88188 1.24796 0.99130 0.97621 0.97617 0.84488 1.22948 0.98040 0.94904 1.01151 1.24653 0.84200 0.93777 1.00168 1.87816 1.38723 1.56760 1.48319 1.23622 0.94405 0.94400 0.90292 0.90609 1.22018 0.95418 0.91726 0.95426 1.22041 0.97093 0.97895 0.97041 1.22572 0.97786 0.97827 0.98591 1.22382 0.97199 0.97435 0.98256 1.21891 1.01158 0.93608 0.96355 1.21347 0.79812 0.84740 0.85307 1.90632 1.39169 1.29272 1.86903 1.47911 1.50779 1.29727 1.05675 1.22130 0.94488 0.86475 1.03590 1.19272 0.93509 0.92651 0.84264 1.21584 1.05191 1.19135 1.11384 0.95619 1.25876 0.95044 0.99418 0.98502 1.70061 1.16665 1.44393 1.27602 0.85703 0.80778 0.78652 0.77712 1.20510 1.19941 1.15853 0.88847 0.92474 0.89021 0.82487 0.91202 0.87566 0.88397 0.91725 0.92099 0.95364 0.92639 0.91923 0.90519 0.90373 0.91203 0.88605 0.89644 0.91877 0.89364 0.93172 0.96724 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.05 8.79 71.98 0.63 -2.42 16 2 C 0.08 2.22 2.06 44.17 0.09 2.32 16 3 H 0.11 2.67 6.45 -2.39 -0.02 2.66 16 4 N -0.66 -17.14 3.74 -514.37 -1.93 -19.06 16 5 C 0.10 1.87 3.42 37.22 0.13 2.00 16 6 H 0.10 1.43 7.54 -2.39 -0.02 1.41 16 7 C -0.17 -2.97 4.29 -16.96 -0.07 -3.04 16 8 H 0.14 1.88 6.48 -2.39 -0.02 1.86 16 9 C -0.13 -2.08 6.76 32.44 0.22 -1.86 16 10 C 0.05 0.91 7.92 73.85 0.58 1.50 16 11 O -0.40 -11.16 11.34 -130.58 -1.48 -12.64 16 12 C 0.03 0.83 4.34 23.07 0.10 0.93 16 13 H 0.08 2.59 6.24 -2.39 -0.01 2.58 16 14 C -0.04 -1.04 1.29 -60.23 -0.08 -1.11 16 15 C -0.10 -3.05 6.01 31.46 0.19 -2.86 16 16 C -0.13 -3.23 6.91 31.99 0.22 -3.01 16 17 C -0.12 -2.03 6.85 31.78 0.22 -1.82 16 18 C -0.09 -1.58 4.85 31.13 0.15 -1.43 16 19 C 0.50 20.09 7.14 87.66 0.63 20.72 16 20 O -0.58 -29.98 16.01 -3.04 -0.05 -30.03 16 21 N -0.61 -24.31 2.86 -851.15 -2.43 -26.74 16 22 C 0.07 2.02 8.80 127.77 1.12 3.15 16 23 C 0.23 11.11 4.23 85.64 0.36 11.48 16 24 C -0.53 -32.13 9.94 25.60 0.25 -31.88 16 25 H 0.03 1.73 8.06 -2.91 -0.02 1.71 16 26 C 0.01 0.56 5.47 84.65 0.46 1.02 16 27 N -0.95 -61.23 13.96 21.45 0.30 -60.93 16 28 Si 0.95 45.35 27.47 68.60 1.88 47.23 16 29 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 30 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 31 H -0.24 -9.99 6.54 99.48 0.65 -9.34 16 32 H 0.09 1.04 7.76 -2.39 -0.02 1.02 16 33 H 0.06 1.05 8.13 -2.39 -0.02 1.03 16 34 H 0.09 1.38 4.53 -2.39 -0.01 1.37 16 35 H 0.35 8.62 6.52 -89.70 -0.59 8.04 16 36 H 0.07 1.26 6.46 -2.39 -0.02 1.24 16 37 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.06 1.84 7.41 -2.38 -0.02 1.83 16 41 H 0.03 1.06 8.03 -2.39 -0.02 1.04 16 42 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.07 1.26 8.07 -2.39 -0.02 1.24 16 47 H 0.10 1.11 7.41 -2.39 -0.02 1.10 16 48 H 0.09 1.68 6.95 -2.39 -0.02 1.67 16 49 H 0.06 1.86 8.07 -2.39 -0.02 1.84 16 50 H 0.09 1.86 6.01 -2.39 -0.01 1.85 16 51 H 0.05 2.24 7.13 -2.39 -0.02 2.23 16 52 H 0.01 0.78 6.85 -2.39 -0.02 0.77 16 53 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 Total: -1.00 -83.51 394.61 1.78 -81.73 By element: Atomic # 1 Polarization: 26.50 SS G_CDS: 0.26 Total: 26.76 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: 5.21 Total: -6.32 kcal Atomic # 7 Polarization: -102.68 SS G_CDS: -4.06 Total: -106.74 kcal Atomic # 8 Polarization: -41.14 SS G_CDS: -1.53 Total: -42.67 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.88 Total: 47.23 kcal Total: -83.51 1.78 -81.73 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339036047.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.433 kcal (2) G-P(sol) polarization free energy of solvation -83.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds