Wall clock time and date at job start Tue Mar 31 2020 20:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46959 * 2 1 4 4 N 1.46900 * 109.47035 * 240.00525 * 2 1 3 5 5 C 1.46897 * 111.00135 * 84.26556 * 4 2 1 6 6 H 1.08994 * 112.81815 * 336.90919 * 5 4 2 7 7 C 1.53825 * 113.57393 * 205.83945 * 5 4 2 8 8 H 1.08995 * 116.28809 * 150.37069 * 7 5 4 9 9 C 1.54433 * 112.94882 * 13.19457 * 7 5 4 10 10 C 1.54496 * 104.13683 * 265.11141 * 9 7 5 11 11 O 1.44368 * 104.47136 * 25.60291 * 10 9 7 12 12 C 1.44261 * 105.49910 * 318.77366 * 11 10 9 13 13 H 1.09006 * 114.86758 * 270.88755 * 12 11 10 14 14 C 1.52929 * 114.43043 * 133.30485 * 12 11 10 15 15 C 1.53640 * 115.01314 * 35.96311 * 14 12 11 16 16 C 1.55042 * 103.99652 * 106.55432 * 15 14 12 17 17 C 1.54951 * 102.84726 * 37.37261 * 16 15 14 18 18 C 1.53216 * 115.30321 * 161.69259 * 14 12 11 19 19 C 1.50691 * 109.47013 * 120.00305 * 2 1 3 20 20 O 1.21285 * 120.00044 * 93.02641 * 19 2 1 21 21 N 1.34780 * 120.00186 * 273.02470 * 19 2 1 22 22 C 1.46498 * 120.00237 * 183.63575 * 21 19 2 23 23 C 1.46502 * 119.99774 * 3.64448 * 21 19 2 24 24 C 1.50701 * 109.47265 * 92.25568 * 23 21 19 25 25 H 1.07997 * 120.00134 * 359.97438 * 24 23 21 26 26 C 1.37883 * 119.99709 * 180.27657 * 24 23 21 27 27 N 1.31510 * 120.00117 * 359.72057 * 26 24 23 28 28 Si 1.86795 * 119.99543 * 179.72170 * 26 24 23 29 29 H 1.48498 * 109.47570 * 359.97438 * 28 26 24 30 30 H 1.48503 * 109.47209 * 119.99982 * 28 26 24 31 31 H 1.48507 * 109.47415 * 239.99774 * 28 26 24 32 32 H 1.08995 * 109.46848 * 177.39166 * 1 2 3 33 33 H 1.08999 * 109.47231 * 297.39473 * 1 2 3 34 34 H 1.09003 * 109.47199 * 57.39198 * 1 2 3 35 35 H 1.00899 * 110.99744 * 208.22110 * 4 2 1 36 36 H 1.09001 * 110.50061 * 25.00156 * 9 7 5 37 37 H 1.09003 * 110.49110 * 147.66458 * 9 7 5 38 38 H 1.08998 * 111.17006 * 266.56198 * 10 9 7 39 39 H 1.08999 * 109.89929 * 144.01016 * 10 9 7 40 40 H 1.08996 * 110.52252 * 225.18603 * 15 14 12 41 41 H 1.08998 * 110.52437 * 347.92851 * 15 14 12 42 42 H 1.08996 * 110.73992 * 279.03197 * 16 15 14 43 43 H 1.08995 * 110.73618 * 155.71094 * 16 15 14 44 44 H 1.09004 * 110.48058 * 203.73578 * 17 16 15 45 45 H 1.09008 * 110.48019 * 81.11400 * 17 16 15 46 46 H 1.08999 * 110.08832 * 349.46934 * 18 14 12 47 47 H 1.09005 * 110.08412 * 111.04341 * 18 14 12 48 48 H 1.08993 * 109.47274 * 275.08979 * 22 21 19 49 49 H 1.09004 * 109.46779 * 35.09266 * 22 21 19 50 50 H 1.09003 * 109.47124 * 155.08741 * 22 21 19 51 51 H 1.09005 * 109.47092 * 332.25282 * 23 21 19 52 52 H 1.08999 * 109.47038 * 212.25559 * 23 21 19 53 53 H 0.97006 * 119.99898 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0660 0.2184 -2.3511 6 1 1.3909 1.0676 -2.2458 7 6 1.9466 -0.4979 -3.7072 8 1 1.4866 0.0713 -4.5149 9 6 1.4825 -1.9648 -3.5745 10 6 2.7969 -2.7767 -3.5616 11 8 3.7878 -1.8512 -3.0658 12 6 3.4948 -0.5926 -3.7071 13 1 3.9897 -0.4407 -4.6664 14 6 3.4856 0.6109 -2.7637 15 6 4.5276 0.5602 -1.6358 16 6 5.5953 1.5994 -2.0646 17 6 4.7431 2.7269 -2.6998 18 6 3.6163 1.9775 -3.4442 19 6 2.0323 -0.7104 1.2304 20 8 2.2867 -1.8954 1.1850 21 7 2.1989 -0.0290 2.3812 22 6 2.7621 -0.7005 3.5551 23 6 1.8165 1.3831 2.4583 24 6 0.3961 1.4928 2.9498 25 1 -0.1657 0.6000 3.1811 26 6 -0.1882 2.7329 3.0981 27 7 0.4958 3.8201 2.8159 28 14 -1.9513 2.8685 3.6998 29 1 -2.4967 1.5093 3.9452 30 1 -1.9850 3.6511 4.9615 31 1 -2.7744 3.5532 2.6707 32 1 -0.3633 -1.0266 -0.0468 33 1 -0.3633 0.4728 0.9124 34 1 -0.3634 0.5538 -0.8657 35 1 2.9228 -1.1103 -1.0324 36 1 0.9169 -2.1044 -2.6532 37 1 0.8846 -2.2555 -4.4383 38 1 3.0609 -3.1143 -4.5638 39 1 2.7010 -3.6273 -2.8868 40 1 4.0764 0.8456 -0.6856 41 1 4.9684 -0.4344 -1.5672 42 1 6.2778 1.1712 -2.7987 43 1 6.1423 1.9707 -1.1980 44 1 5.3418 3.3088 -3.4006 45 1 4.3259 3.3717 -1.9262 46 1 3.8816 1.8492 -4.4936 47 1 2.6800 2.5291 -3.3590 48 1 1.9677 -1.2153 4.0953 49 1 3.5119 -1.4240 3.2349 50 1 3.2261 0.0384 4.2086 51 1 1.8948 1.8352 1.4695 52 1 2.4810 1.9023 3.1489 53 1 0.0846 4.6925 2.9199 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339036049.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:52 Heat of formation + Delta-G solvation = -69.211438 kcal Electronic energy + Delta-G solvation = -32334.244607 eV Core-core repulsion = 28398.737167 eV Total energy + Delta-G solvation = -3935.507440 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.56645 -40.82351 -38.29018 -36.81709 -36.50603 -34.53816 -34.32027 -31.78835 -30.63817 -29.64241 -29.27407 -27.92269 -27.19361 -25.48215 -24.90248 -23.54511 -23.39776 -21.64968 -20.89856 -20.09641 -19.30713 -18.59824 -17.92100 -17.78191 -17.03561 -16.94260 -16.73009 -16.40391 -16.11859 -15.89584 -15.57846 -15.25862 -14.76961 -14.73865 -14.26888 -14.20032 -13.95318 -13.70666 -13.60890 -13.54689 -13.38908 -13.22967 -13.03385 -12.89617 -12.73935 -12.59996 -12.57749 -12.46823 -12.09317 -12.02584 -11.98883 -11.91118 -11.77227 -11.71667 -11.65311 -11.44702 -11.15884 -10.86443 -10.71140 -10.48837 -10.36303 -9.51360 -9.25669 -8.20737 -6.33148 1.39789 1.43854 1.53467 1.68632 2.22658 2.42606 2.75434 3.08683 3.14200 3.30902 3.57518 3.68967 3.73929 3.85565 3.92938 4.13378 4.21882 4.29009 4.36664 4.39390 4.44682 4.47534 4.49268 4.52473 4.56243 4.61231 4.67964 4.74227 4.80147 4.82661 4.85711 4.87878 4.92377 4.94616 4.99160 5.02116 5.04992 5.08333 5.17163 5.20100 5.25233 5.35010 5.38734 5.43449 5.46084 5.53226 5.63081 5.77683 5.99075 6.04052 6.18432 6.43011 6.52834 6.79066 7.26298 7.39072 8.85326 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.012308 B = 0.004070 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.389659 B = 6878.520279 C = 7294.680406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.087 3.913 3 H 0.057 0.943 4 N -0.641 5.641 5 C 0.075 3.925 6 H 0.081 0.919 7 C -0.122 4.122 8 H 0.133 0.867 9 C -0.136 4.136 10 C 0.052 3.948 11 O -0.382 6.382 12 C 0.063 3.937 13 H 0.104 0.896 14 C -0.100 4.100 15 C -0.112 4.112 16 C -0.117 4.117 17 C -0.122 4.122 18 C -0.091 4.091 19 C 0.508 3.492 20 O -0.584 6.584 21 N -0.605 5.605 22 C 0.094 3.906 23 C 0.250 3.750 24 C -0.536 4.536 25 H 0.051 0.949 26 C 0.027 3.973 27 N -0.917 5.917 28 Si 0.951 3.049 29 H -0.272 1.272 30 H -0.279 1.279 31 H -0.276 1.276 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.349 0.651 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.034 0.966 41 H 0.057 0.943 42 H 0.077 0.923 43 H 0.059 0.941 44 H 0.085 0.915 45 H 0.052 0.948 46 H 0.090 0.910 47 H 0.071 0.929 48 H 0.046 0.954 49 H 0.064 0.936 50 H 0.081 0.919 51 H 0.031 0.969 52 H 0.020 0.980 53 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.628 -3.769 -15.977 17.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.025 4.025 3 H 0.075 0.925 4 N -0.275 5.275 5 C -0.036 4.036 6 H 0.099 0.901 7 C -0.141 4.141 8 H 0.150 0.850 9 C -0.174 4.174 10 C -0.024 4.024 11 O -0.301 6.301 12 C 0.006 3.994 13 H 0.122 0.878 14 C -0.102 4.102 15 C -0.150 4.150 16 C -0.155 4.155 17 C -0.160 4.160 18 C -0.129 4.129 19 C 0.296 3.704 20 O -0.466 6.466 21 N -0.336 5.336 22 C -0.049 4.049 23 C 0.130 3.870 24 C -0.575 4.575 25 H 0.070 0.930 26 C -0.174 4.174 27 N -0.556 5.556 28 Si 0.777 3.223 29 H -0.197 1.197 30 H -0.205 1.205 31 H -0.201 1.201 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.172 0.828 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.053 0.947 41 H 0.076 0.924 42 H 0.096 0.904 43 H 0.078 0.922 44 H 0.104 0.896 45 H 0.071 0.929 46 H 0.109 0.891 47 H 0.090 0.910 48 H 0.065 0.935 49 H 0.083 0.917 50 H 0.099 0.901 51 H 0.049 0.951 52 H 0.038 0.962 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.316 -4.504 -15.941 17.397 hybrid contribution -0.284 0.765 1.171 1.428 sum 5.032 -3.739 -14.770 16.045 Atomic orbital electron populations 1.21692 0.91917 1.01770 1.03188 1.21303 0.97899 0.95593 0.87710 0.92503 1.60237 1.33965 1.31141 1.02116 1.22708 0.95562 0.94149 0.91152 0.90066 1.24197 0.95698 0.97114 0.97063 0.84962 1.22702 0.97963 0.93463 1.03258 1.23508 0.86768 0.92888 0.99253 1.88950 1.53355 1.20138 1.67638 1.24064 0.95704 0.84570 0.95097 0.87822 1.22737 0.95598 0.95510 0.96373 1.22093 0.96674 0.99416 0.96794 1.22464 0.97063 0.95630 1.00338 1.22398 0.96815 0.97245 0.99539 1.21819 0.99345 0.91864 0.99897 1.20906 0.77047 0.86792 0.85609 1.90581 1.53808 1.16336 1.85883 1.48209 1.60729 1.13509 1.11106 1.21536 0.98019 0.97744 0.87608 1.19211 0.94900 0.75578 0.97358 1.21547 0.98407 0.92374 1.45134 0.93026 1.25557 1.01483 0.95200 0.95132 1.70007 1.38440 0.98335 1.48834 0.85604 0.80357 0.78133 0.78208 1.19677 1.20501 1.20112 0.92925 0.91454 0.91023 0.82838 0.90532 0.89835 0.90807 0.90325 0.94718 0.92379 0.90413 0.92204 0.89634 0.92879 0.89145 0.91020 0.93523 0.91706 0.90078 0.95086 0.96174 0.92307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.83 9.35 71.98 0.67 -4.16 16 2 C 0.09 3.36 1.70 44.17 0.08 3.43 16 3 H 0.06 2.33 5.45 -2.39 -0.01 2.32 16 4 N -0.64 -21.35 3.91 -471.97 -1.85 -23.19 16 5 C 0.08 2.02 3.35 45.18 0.15 2.17 16 6 H 0.08 2.26 7.15 -2.39 -0.02 2.25 16 7 C -0.12 -2.53 4.96 -9.31 -0.05 -2.58 16 8 H 0.13 2.08 8.14 -2.39 -0.02 2.06 16 9 C -0.14 -2.96 6.26 31.59 0.20 -2.76 16 10 C 0.05 1.16 7.64 72.49 0.55 1.72 16 11 O -0.38 -10.38 8.74 -148.98 -1.30 -11.68 16 12 C 0.06 1.38 4.70 31.29 0.15 1.53 16 13 H 0.10 1.84 7.99 -2.38 -0.02 1.82 16 14 C -0.10 -2.38 1.00 -51.93 -0.05 -2.43 16 15 C -0.11 -3.15 4.67 31.51 0.15 -3.01 16 16 C -0.12 -2.68 6.91 31.96 0.22 -2.46 16 17 C -0.12 -2.49 6.84 31.75 0.22 -2.27 16 18 C -0.09 -1.75 6.18 31.16 0.19 -1.55 16 19 C 0.51 22.23 6.66 87.65 0.58 22.81 16 20 O -0.58 -27.80 16.00 -3.05 -0.05 -27.85 16 21 N -0.60 -26.50 2.86 -851.13 -2.43 -28.93 16 22 C 0.09 3.57 10.39 127.77 1.33 4.89 16 23 C 0.25 12.00 5.02 85.63 0.43 12.43 16 24 C -0.54 -27.46 7.32 25.60 0.19 -27.27 16 25 H 0.05 2.73 7.78 -2.91 -0.02 2.71 16 26 C 0.03 1.39 5.46 84.66 0.46 1.85 16 27 N -0.92 -49.37 13.29 21.45 0.28 -49.08 16 28 Si 0.95 41.22 29.54 68.60 2.03 43.24 16 29 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 30 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 31 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 32 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.07 2.90 5.80 -2.39 -0.01 2.89 16 34 H 0.07 2.38 7.72 -2.39 -0.02 2.36 16 35 H 0.35 12.86 5.03 -89.69 -0.45 12.41 16 36 H 0.08 2.11 6.99 -2.39 -0.02 2.09 16 37 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.03 1.17 7.16 -2.39 -0.02 1.15 16 41 H 0.06 1.81 6.94 -2.39 -0.02 1.79 16 42 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 46 H 0.09 1.31 7.82 -2.39 -0.02 1.29 16 47 H 0.07 1.38 7.72 -2.38 -0.02 1.36 16 48 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 49 H 0.06 2.35 7.64 -2.38 -0.02 2.34 16 50 H 0.08 2.79 7.86 -2.39 -0.02 2.77 16 51 H 0.03 1.55 5.70 -2.38 -0.01 1.54 16 52 H 0.02 1.02 7.89 -2.39 -0.02 1.00 16 53 H 0.27 13.65 8.31 -92.70 -0.77 12.88 16 Total: -1.00 -60.14 396.43 2.60 -57.55 By element: Atomic # 1 Polarization: 37.15 SS G_CDS: 0.44 Total: 37.59 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: 5.47 Total: 2.35 kcal Atomic # 7 Polarization: -97.21 SS G_CDS: -3.99 Total: -101.21 kcal Atomic # 8 Polarization: -38.18 SS G_CDS: -1.35 Total: -39.53 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.24 kcal Total: -60.14 2.60 -57.55 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339036049.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.664 kcal (2) G-P(sol) polarization free energy of solvation -60.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds