Wall clock time and date at job start Tue Mar 31 2020 19:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35992 * 116.99801 * 2 1 4 4 C 1.38568 * 120.07706 * 359.97438 * 3 2 1 5 5 C 1.38238 * 120.00072 * 179.97438 * 4 3 2 6 6 C 1.38245 * 120.15026 * 0.28094 * 5 4 3 7 7 C 1.50706 * 119.93082 * 179.70096 * 6 5 4 8 8 N 1.46901 * 109.46837 * 89.99432 * 7 6 5 9 9 C 1.46897 * 110.99849 * 179.97438 * 8 7 6 10 10 H 1.09007 * 109.47040 * 36.11643 * 9 8 7 11 11 C 1.53000 * 109.47679 * 276.11990 * 9 8 7 12 12 C 1.53001 * 109.47102 * 156.11660 * 9 8 7 13 13 N 1.46904 * 109.47089 * 303.76965 * 12 9 8 14 14 C 1.46897 * 110.99868 * 164.05046 * 13 12 9 15 15 C 1.46902 * 111.00016 * 287.99828 * 13 12 9 16 16 C 1.38244 * 120.14538 * 359.44091 * 6 5 4 17 17 C 1.38575 * 119.99663 * 0.55874 * 16 6 5 18 18 O 1.35994 * 120.07128 * 179.70112 * 17 16 6 19 19 C 1.42899 * 116.99956 * 0.02562 * 18 17 16 20 20 C 1.53008 * 109.46632 * 180.02562 * 19 18 17 21 21 C 1.50705 * 109.46672 * 179.97438 * 20 19 18 22 22 H 1.08002 * 120.00219 * 0.02562 * 21 20 19 23 23 C 1.37875 * 119.99727 * 179.97438 * 21 20 19 24 24 N 1.31522 * 120.00127 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 120.00175 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.46839 * 89.99805 * 25 23 21 27 27 H 1.48495 * 109.47227 * 210.00097 * 25 23 21 28 28 H 1.48500 * 109.46838 * 329.99912 * 25 23 21 29 29 H 1.09000 * 109.47645 * 60.00147 * 1 2 3 30 30 H 1.08998 * 109.47070 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47312 * 300.00231 * 1 2 3 32 32 H 1.08004 * 119.99796 * 359.95910 * 4 3 2 33 33 H 1.08008 * 119.92726 * 179.97438 * 5 4 3 34 34 H 1.08994 * 109.46685 * 209.99480 * 7 6 5 35 35 H 1.08996 * 109.46715 * 330.00148 * 7 6 5 36 36 H 1.00894 * 111.00602 * 303.95474 * 8 7 6 37 37 H 1.09005 * 109.47144 * 59.99623 * 11 9 8 38 38 H 1.08997 * 109.47296 * 179.97438 * 11 9 8 39 39 H 1.08998 * 109.46778 * 300.00099 * 11 9 8 40 40 H 1.09002 * 109.47048 * 63.77281 * 12 9 8 41 41 H 1.09010 * 109.46918 * 183.77241 * 12 9 8 42 42 H 1.08999 * 109.47516 * 55.54019 * 14 13 12 43 43 H 1.08994 * 109.46857 * 175.54428 * 14 13 12 44 44 H 1.09004 * 109.46539 * 295.53801 * 14 13 12 45 45 H 1.09007 * 109.47231 * 60.00110 * 15 13 12 46 46 H 1.08992 * 109.47298 * 179.97438 * 15 13 12 47 47 H 1.09003 * 109.47407 * 300.00761 * 15 13 12 48 48 H 1.07996 * 120.00388 * 180.25238 * 16 6 5 49 49 H 1.08998 * 109.47126 * 299.99941 * 19 18 17 50 50 H 1.08995 * 109.47131 * 60.00558 * 19 18 17 51 51 H 1.08998 * 109.47215 * 299.99761 * 20 19 18 52 52 H 1.08995 * 109.47009 * 60.00358 * 20 19 18 53 53 H 0.97000 * 120.00026 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2931 2.3748 -0.0005 5 6 1.9223 3.6057 0.0000 6 6 3.3028 3.6799 -0.0048 7 6 3.9835 5.0244 -0.0110 8 7 4.2092 5.4654 1.3720 9 6 4.8732 6.7753 1.4052 10 1 4.5045 7.3904 0.5842 11 6 6.3844 6.5850 1.2610 12 6 4.5709 7.4667 2.7361 13 7 3.1165 7.5685 2.9159 14 6 2.7786 7.8701 4.3133 15 6 2.5426 8.5703 2.0075 16 6 4.0602 2.5235 0.0015 17 6 3.4358 1.2863 0.0010 18 8 4.1795 0.1477 0.0011 19 6 5.6002 0.3008 0.0023 20 6 6.2618 -1.0789 0.0015 21 6 7.7601 -0.9175 0.0022 22 1 8.1969 0.0703 0.0034 23 6 8.5734 -2.0308 0.0022 24 7 8.0415 -3.2337 0.0011 25 14 10.4307 -1.8309 0.0037 26 1 10.9217 -1.7786 1.4042 27 1 11.0532 -2.9830 -0.6965 28 1 10.7935 -0.5720 -0.6954 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 0.2145 2.3197 -0.0016 33 1 1.3341 4.5116 -0.0008 34 1 4.9399 4.9450 -0.5277 35 1 3.3519 5.7490 -0.5248 36 1 3.3442 5.4849 1.8911 37 1 6.5998 6.0924 0.3127 38 1 6.8770 7.5570 1.2851 39 1 6.7531 5.9699 2.0818 40 1 4.9982 6.8851 3.5530 41 1 5.0075 8.4656 2.7341 42 1 3.2973 8.7766 4.6250 43 1 1.7024 8.0181 4.4030 44 1 3.0852 7.0392 4.9486 45 1 2.7481 8.2853 0.9757 46 1 1.4649 8.6250 2.1611 47 1 2.9890 9.5436 2.2113 48 1 5.1385 2.5841 0.0019 49 1 5.9072 0.8510 -0.8872 50 1 5.9057 0.8501 0.8928 51 1 5.9549 -1.6295 0.8908 52 1 5.9562 -1.6278 -0.8892 53 1 8.6137 -4.0170 0.0015 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342206662.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:18 Heat of formation + Delta-G solvation = -71.762375 kcal Electronic energy + Delta-G solvation = -29206.629510 eV Core-core repulsion = 25271.011453 eV Total energy + Delta-G solvation = -3935.618057 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.49210 -39.49239 -39.42789 -38.20385 -36.28404 -35.44721 -33.01678 -32.32068 -30.95665 -30.12808 -28.47891 -28.17574 -27.86863 -27.02412 -25.50030 -23.93953 -23.19671 -22.43043 -21.89592 -21.05997 -19.47515 -18.61280 -17.76272 -17.59287 -17.13214 -16.85484 -16.68416 -16.51569 -16.43612 -16.31569 -15.59363 -15.50092 -15.17924 -15.05263 -14.98323 -14.31840 -14.24835 -14.12944 -13.86617 -13.51278 -13.30084 -13.19793 -13.08316 -12.98084 -12.89219 -12.72072 -12.64828 -12.62458 -12.56133 -12.47852 -12.15476 -12.06691 -11.88399 -11.82126 -11.59406 -11.56584 -11.48287 -11.38300 -10.61207 -9.61642 -9.36327 -9.19396 -8.67921 -8.25309 -6.39398 0.35371 0.48423 1.40842 1.43992 1.55103 2.29231 2.45387 2.53666 2.71384 2.98798 3.08580 3.46784 3.82528 3.90260 3.94671 4.10221 4.17543 4.25435 4.27977 4.30231 4.32356 4.43182 4.44256 4.45870 4.48174 4.48742 4.57118 4.63603 4.68046 4.69749 4.74829 4.76342 4.78218 4.86065 4.87838 4.96365 5.03581 5.05309 5.12866 5.24833 5.30718 5.33466 5.42089 5.47482 5.64275 5.70061 5.83507 6.02466 6.07092 6.07625 6.25873 6.28085 6.69781 6.73680 6.76740 7.30505 8.88137 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.008278 B = 0.002874 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3381.836534 B = 9739.751395 C =12524.721469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.343 6.343 3 C 0.074 3.926 4 C -0.164 4.164 5 C -0.106 4.106 6 C -0.079 4.079 7 C 0.112 3.888 8 N -0.686 5.686 9 C 0.094 3.906 10 H 0.047 0.953 11 C -0.142 4.142 12 C 0.056 3.944 13 N -0.560 5.560 14 C 0.026 3.974 15 C 0.023 3.977 16 C -0.160 4.160 17 C 0.068 3.932 18 O -0.337 6.337 19 C 0.087 3.913 20 C 0.031 3.969 21 C -0.545 4.545 22 H 0.070 0.930 23 C 0.001 3.999 24 N -0.932 5.932 25 Si 0.978 3.022 26 H -0.270 1.270 27 H -0.280 1.280 28 H -0.258 1.258 29 H 0.070 0.930 30 H 0.109 0.891 31 H 0.069 0.931 32 H 0.164 0.836 33 H 0.156 0.844 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.356 0.644 37 H 0.049 0.951 38 H 0.069 0.931 39 H 0.051 0.949 40 H 0.074 0.926 41 H 0.049 0.951 42 H 0.029 0.971 43 H 0.076 0.924 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.076 0.924 47 H 0.029 0.971 48 H 0.127 0.873 49 H 0.057 0.943 50 H 0.056 0.944 51 H -0.005 1.005 52 H -0.004 1.004 53 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.859 27.020 3.359 31.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.257 6.257 3 C 0.028 3.972 4 C -0.183 4.183 5 C -0.125 4.125 6 C -0.080 4.080 7 C -0.016 4.016 8 N -0.321 5.321 9 C -0.016 4.016 10 H 0.065 0.935 11 C -0.200 4.200 12 C -0.072 4.072 13 N -0.284 5.284 14 C -0.122 4.122 15 C -0.125 4.125 16 C -0.180 4.180 17 C 0.023 3.977 18 O -0.252 6.252 19 C 0.013 3.987 20 C -0.006 4.006 21 C -0.582 4.582 22 H 0.089 0.911 23 C -0.198 4.198 24 N -0.571 5.571 25 Si 0.801 3.199 26 H -0.195 1.195 27 H -0.205 1.205 28 H -0.182 1.182 29 H 0.089 0.911 30 H 0.127 0.873 31 H 0.088 0.912 32 H 0.181 0.819 33 H 0.173 0.827 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.178 0.822 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.092 0.908 41 H 0.068 0.932 42 H 0.048 0.952 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.094 0.906 47 H 0.047 0.953 48 H 0.144 0.856 49 H 0.075 0.925 50 H 0.074 0.926 51 H 0.013 0.987 52 H 0.014 0.986 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.432 25.660 3.321 30.126 hybrid contribution 0.582 0.768 -0.032 0.964 sum -14.849 26.427 3.289 30.491 Atomic orbital electron populations 1.23338 0.76506 1.05232 1.02476 1.86185 1.23463 1.26793 1.89280 1.18629 0.88974 0.86266 1.03310 1.21285 1.00912 0.90393 1.05687 1.21001 0.93346 0.97715 1.00429 1.19635 0.93647 0.94166 1.00519 1.20752 0.99081 0.91192 0.90623 1.60468 1.31222 1.27891 1.12479 1.21460 0.94812 0.88930 0.96418 0.93485 1.21796 0.94741 1.01681 1.01831 1.22288 0.87757 0.99309 0.97893 1.61853 1.11505 1.48404 1.06622 1.22380 1.01811 0.99928 0.88034 1.22458 1.00482 0.92664 0.96942 1.21039 1.00523 0.90677 1.05741 1.18904 0.89422 0.86735 1.02684 1.86167 1.20274 1.29881 1.88850 1.22809 0.75943 0.99887 1.00097 1.18935 0.94823 0.91123 0.95736 1.21385 0.91005 0.93714 1.52130 0.91141 1.26078 1.05050 0.94550 0.94103 1.70140 1.37680 0.98659 1.50653 0.85259 0.77639 0.78300 0.78710 1.19479 1.20529 1.18223 0.91149 0.87282 0.91226 0.81865 0.82683 0.91175 0.92748 0.82244 0.93204 0.91250 0.93021 0.90796 0.93244 0.95245 0.90513 0.91580 0.91609 0.90562 0.95253 0.85561 0.92463 0.92622 0.98661 0.98551 0.92436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.81 113.37 1.11 1.49 16 2 O -0.34 -11.85 10.28 -79.60 -0.82 -12.67 16 3 C 0.07 2.50 6.70 22.57 0.15 2.65 16 4 C -0.16 -3.97 9.04 22.35 0.20 -3.77 16 5 C -0.11 -2.32 9.69 22.27 0.22 -2.10 16 6 C -0.08 -2.04 5.39 -19.86 -0.11 -2.14 16 7 C 0.11 2.33 5.61 85.56 0.48 2.81 16 8 N -0.69 -14.05 6.29 -495.57 -3.12 -17.17 16 9 C 0.09 1.54 2.58 44.92 0.12 1.65 16 10 H 0.05 0.71 6.60 -2.38 -0.02 0.70 16 11 C -0.14 -2.48 9.40 71.98 0.68 -1.80 16 12 C 0.06 0.81 4.60 86.30 0.40 1.20 16 13 N -0.56 -7.54 3.86 -948.82 -3.66 -11.20 16 14 C 0.03 0.30 9.55 127.69 1.22 1.52 16 15 C 0.02 0.24 9.37 127.69 1.20 1.43 16 16 C -0.16 -5.41 8.69 22.35 0.19 -5.22 16 17 C 0.07 2.69 6.70 22.57 0.15 2.84 16 18 O -0.34 -16.21 9.92 -79.62 -0.79 -17.00 16 19 C 0.09 4.19 4.68 71.98 0.34 4.53 16 20 C 0.03 1.81 5.34 29.85 0.16 1.97 16 21 C -0.54 -32.15 9.11 25.60 0.23 -31.92 16 22 H 0.07 3.89 7.74 -2.91 -0.02 3.86 16 23 C 0.00 0.03 5.46 84.65 0.46 0.49 16 24 N -0.93 -58.65 13.29 21.45 0.28 -58.37 16 25 Si 0.98 44.82 29.54 68.60 2.03 46.85 16 26 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 27 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 28 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 29 H 0.07 1.14 7.66 -2.39 -0.02 1.12 16 30 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.07 1.14 7.67 -2.38 -0.02 1.13 16 32 H 0.16 2.72 6.30 -2.91 -0.02 2.70 16 33 H 0.16 2.27 8.06 -2.91 -0.02 2.24 16 34 H 0.07 1.56 7.30 -2.39 -0.02 1.54 16 35 H 0.05 0.91 8.00 -2.39 -0.02 0.89 16 36 H 0.36 7.33 7.41 -89.70 -0.66 6.67 16 37 H 0.05 0.95 7.38 -2.38 -0.02 0.93 16 38 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.07 1.23 8.00 -2.39 -0.02 1.21 16 41 H 0.05 0.63 8.03 -2.38 -0.02 0.61 16 42 H 0.03 0.31 8.13 -2.39 -0.02 0.29 16 43 H 0.08 0.73 8.04 -2.39 -0.02 0.71 16 44 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.07 0.71 6.78 -2.38 -0.02 0.69 16 46 H 0.08 0.68 8.07 -2.39 -0.02 0.66 16 47 H 0.03 0.29 8.11 -2.39 -0.02 0.27 16 48 H 0.13 4.40 6.30 -2.91 -0.02 4.38 16 49 H 0.06 2.59 7.66 -2.39 -0.02 2.57 16 50 H 0.06 2.56 7.66 -2.39 -0.02 2.54 16 51 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 52 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 53 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -74.08 424.30 1.33 -72.74 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: 0.21 Total: 21.16 kcal Atomic # 6 Polarization: -31.55 SS G_CDS: 7.20 Total: -24.35 kcal Atomic # 7 Polarization: -80.25 SS G_CDS: -6.49 Total: -86.74 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -1.61 Total: -29.66 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -74.08 1.33 -72.74 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342206662.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.981 kcal (2) G-P(sol) polarization free energy of solvation -74.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds