Wall clock time and date at job start Tue Mar 31 2020 21:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.46510 * 2 1 4 4 C 1.46500 * 120.00445 * 90.00309 * 3 2 1 5 5 C 1.50694 * 109.47517 * 89.99446 * 4 3 2 6 6 H 1.08002 * 120.00179 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00472 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99350 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00608 * 179.97438 * 7 5 4 10 10 H 1.48490 * 109.47339 * 179.97438 * 9 7 5 11 11 H 1.48493 * 109.47239 * 300.00306 * 9 7 5 12 12 H 1.48504 * 109.46636 * 59.99865 * 9 7 5 13 13 C 1.34777 * 119.99949 * 269.99484 * 3 2 1 14 14 O 1.21284 * 120.00180 * 180.02562 * 13 3 2 15 15 C 1.50701 * 120.00191 * 0.02562 * 13 3 2 16 16 N 1.46896 * 109.47304 * 179.97438 * 15 13 3 17 17 C 1.47703 * 110.99898 * 266.35001 * 16 15 13 18 18 C 1.52374 * 87.59645 * 222.18846 * 17 16 15 19 19 C 1.52641 * 121.98192 * 149.99049 * 18 17 16 20 20 C 1.54011 * 86.67721 * 102.61825 * 19 18 17 21 21 C 1.52637 * 121.97929 * 260.47484 * 18 17 16 22 22 C 1.47704 * 111.00055 * 170.00280 * 16 15 13 23 23 H 1.09003 * 113.52907 * 23.12891 * 22 16 15 24 24 C 1.52997 * 113.52911 * 252.49421 * 22 16 15 25 25 H 1.09003 * 109.82355 * 200.20666 * 24 22 16 26 26 C 1.54372 * 109.83458 * 79.31737 * 24 22 16 27 27 C 1.55455 * 102.18944 * 219.18263 * 26 24 22 28 28 C 1.54945 * 100.98666 * 34.03533 * 27 26 24 29 29 O 1.43243 * 109.83249 * 321.08590 * 24 22 16 30 30 H 1.08994 * 109.47380 * 299.99900 * 1 2 3 31 31 H 1.08996 * 109.47097 * 60.00813 * 1 2 3 32 32 H 1.09004 * 109.46532 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47380 * 240.00100 * 2 1 3 34 34 H 1.08996 * 109.47430 * 119.99618 * 2 1 3 35 35 H 1.09005 * 109.46643 * 329.99978 * 4 3 2 36 36 H 1.08998 * 109.47481 * 209.99812 * 4 3 2 37 37 H 0.97005 * 119.99661 * 179.97438 * 8 7 5 38 38 H 1.09003 * 109.47026 * 300.00310 * 15 13 3 39 39 H 1.09000 * 109.46801 * 59.99203 * 15 13 3 40 40 H 1.09003 * 113.53370 * 336.86507 * 17 16 15 41 41 H 1.08996 * 113.53217 * 107.50467 * 17 16 15 42 42 H 1.08997 * 113.67813 * 217.05716 * 19 18 17 43 43 H 1.09001 * 113.67809 * 348.17247 * 19 18 17 44 44 H 1.08998 * 113.56354 * 269.89582 * 20 19 18 45 45 H 1.08998 * 113.63513 * 139.15183 * 20 19 18 46 46 H 1.09001 * 113.68071 * 11.82409 * 21 18 17 47 47 H 1.08995 * 113.68325 * 142.93655 * 21 18 17 48 48 H 1.09000 * 110.85051 * 337.31809 * 26 24 22 49 49 H 1.09004 * 110.85300 * 100.93735 * 26 24 22 50 50 H 1.08999 * 111.05692 * 276.12550 * 27 26 24 51 51 H 1.08994 * 111.15011 * 151.99200 * 27 26 24 52 52 H 1.09000 * 110.31315 * 204.69481 * 28 27 26 53 53 H 1.09001 * 110.39293 * 82.56753 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0720 1.2687 5 6 3.6856 1.8353 1.7037 6 1 4.3428 1.2312 1.0958 7 6 4.1489 2.3900 2.8779 8 7 3.3488 3.1261 3.6179 9 14 5.9129 2.0961 3.4176 10 1 6.1604 2.7963 4.7035 11 1 6.1401 0.6394 3.5949 12 1 6.8408 2.6194 2.3829 13 6 2.2428 2.0166 -1.1672 14 8 2.6474 3.1600 -1.1673 15 6 1.9913 1.3063 -2.4723 16 7 2.3090 2.2065 -3.5889 17 6 1.1038 2.9265 -4.0477 18 6 1.5733 2.6719 -5.4748 19 6 0.5916 2.5185 -6.6336 20 6 0.9640 3.9615 -7.0223 21 6 2.2999 3.7388 -6.2893 22 6 2.3050 1.4780 -4.8738 23 1 1.7081 0.5661 -4.8551 24 6 3.7025 1.2610 -5.4573 25 1 3.6296 1.0577 -6.5257 26 6 4.3896 0.0765 -4.7445 27 6 5.8558 0.5767 -4.6158 28 6 5.6325 2.0959 -4.4091 29 8 4.5069 2.4259 -5.2383 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8900 35 1 1.5816 1.6878 2.0284 36 1 2.0953 3.1412 1.1383 37 1 3.6747 3.5161 4.4442 38 1 2.6212 0.4187 -2.5302 39 1 0.9433 1.0124 -2.5299 40 1 0.1721 2.4183 -3.7990 41 1 1.0963 3.9814 -3.7737 42 1 0.8961 1.7746 -7.3697 43 1 -0.4450 2.4041 -6.3169 44 1 0.3309 4.7158 -6.5550 45 1 1.0756 4.1098 -8.0964 46 1 2.6233 4.5959 -5.6985 47 1 3.0885 3.3407 -6.9278 48 1 3.9500 -0.0926 -3.7615 49 1 4.3382 -0.8258 -5.3540 50 1 6.4174 0.3830 -5.5297 51 1 6.3490 0.1310 -3.7520 52 1 6.5129 2.6545 -4.7269 53 1 5.4076 2.3081 -3.3639 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000377778406.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:11 Heat of formation + Delta-G solvation = -37.541327 kcal Electronic energy + Delta-G solvation = -31583.679328 eV Core-core repulsion = 27649.545207 eV Total energy + Delta-G solvation = -3934.134121 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.39664 -40.46170 -39.57253 -37.24477 -36.76927 -34.92758 -32.91369 -31.86159 -31.38213 -30.53139 -28.82395 -26.59455 -26.25056 -25.87535 -24.56947 -23.80890 -23.04039 -22.28299 -21.42838 -19.96596 -18.75483 -18.63177 -18.01825 -17.73891 -17.40498 -16.79098 -16.75999 -16.46222 -16.22116 -15.98334 -15.47423 -15.13973 -14.74328 -14.55887 -14.49417 -14.25024 -14.14897 -13.81431 -13.69110 -13.55100 -13.26240 -13.21293 -13.10650 -12.93181 -12.75153 -12.66887 -12.54947 -12.46640 -12.29668 -12.15644 -12.03352 -11.99109 -11.88594 -11.75159 -11.56371 -11.11630 -11.10107 -10.73079 -10.66053 -10.58002 -10.19868 -9.58563 -9.40278 -8.23702 -6.38774 1.32973 1.38252 1.45259 1.89672 2.23980 2.39749 2.97610 3.02450 3.05402 3.39302 3.55533 3.68572 3.77961 3.89277 3.96004 3.96835 4.05472 4.06625 4.13908 4.24653 4.29613 4.35875 4.41598 4.44455 4.45668 4.57005 4.60350 4.65505 4.83404 4.87134 4.89578 4.92286 4.95120 4.96368 4.96978 5.00627 5.02847 5.03607 5.05448 5.16735 5.20154 5.31894 5.33699 5.35756 5.45757 5.50613 5.56696 5.61883 5.86479 6.05964 6.08384 6.37113 6.69525 6.85045 7.27907 7.57913 8.83122 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.012407 B = 0.003653 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.200192 B = 7662.653762 C = 8563.677602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.101 3.899 3 N -0.608 5.608 4 C 0.266 3.734 5 C -0.542 4.542 6 H 0.051 0.949 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.967 3.033 10 H -0.277 1.277 11 H -0.257 1.257 12 H -0.280 1.280 13 C 0.498 3.502 14 O -0.583 6.583 15 C 0.016 3.984 16 N -0.457 5.457 17 C 0.021 3.979 18 C -0.093 4.093 19 C -0.109 4.109 20 C -0.139 4.139 21 C -0.096 4.096 22 C 0.028 3.972 23 H 0.111 0.889 24 C 0.096 3.904 25 H 0.104 0.896 26 C -0.147 4.147 27 C -0.148 4.148 28 C 0.051 3.949 29 O -0.373 6.373 30 H 0.036 0.964 31 H 0.057 0.943 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.071 0.929 35 H 0.020 0.980 36 H -0.010 1.010 37 H 0.267 0.733 38 H 0.112 0.888 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.052 0.948 42 H 0.104 0.896 43 H 0.076 0.924 44 H 0.070 0.930 45 H 0.080 0.920 46 H 0.036 0.964 47 H 0.090 0.910 48 H 0.062 0.938 49 H 0.109 0.891 50 H 0.095 0.905 51 H 0.077 0.923 52 H 0.083 0.917 53 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.950 -11.877 -24.042 27.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.022 4.022 3 N -0.340 5.340 4 C 0.145 3.855 5 C -0.580 4.580 6 H 0.069 0.931 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.791 3.209 10 H -0.202 1.202 11 H -0.181 1.181 12 H -0.206 1.206 13 C 0.286 3.714 14 O -0.462 6.462 15 C -0.115 4.115 16 N -0.179 5.179 17 C -0.108 4.108 18 C -0.094 4.094 19 C -0.147 4.147 20 C -0.177 4.177 21 C -0.133 4.133 22 C -0.081 4.081 23 H 0.128 0.872 24 C 0.038 3.962 25 H 0.122 0.878 26 C -0.185 4.185 27 C -0.185 4.185 28 C -0.026 4.026 29 O -0.292 6.292 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.089 0.911 35 H 0.038 0.962 36 H 0.008 0.992 37 H 0.076 0.924 38 H 0.130 0.870 39 H 0.112 0.888 40 H 0.102 0.898 41 H 0.071 0.929 42 H 0.122 0.878 43 H 0.095 0.905 44 H 0.089 0.911 45 H 0.099 0.901 46 H 0.055 0.945 47 H 0.109 0.891 48 H 0.081 0.919 49 H 0.127 0.873 50 H 0.113 0.887 51 H 0.096 0.904 52 H 0.101 0.899 53 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -4.206 -10.637 -23.667 26.286 hybrid contribution 0.288 0.060 1.478 1.507 sum -3.918 -10.577 -22.189 24.892 Atomic orbital electron populations 1.22146 0.94581 1.03522 1.01505 1.21714 0.95296 0.81434 1.03709 1.48310 1.64500 1.15093 1.06126 1.18612 0.95192 0.91195 0.80539 1.21672 0.97897 1.32032 1.06430 0.93060 1.25873 1.02431 0.94445 0.96435 1.70054 1.37849 1.34206 1.14789 0.85486 0.78951 0.79172 0.77327 1.20198 1.18149 1.20569 1.21198 0.77333 0.86657 0.86200 1.90643 1.46924 1.20781 1.87825 1.22687 1.02625 0.96415 0.89815 1.68838 1.31363 1.17109 1.00595 1.23571 0.92949 0.99968 0.94311 1.22332 0.97853 0.96373 0.92849 1.22699 0.98477 0.97333 0.96185 1.22879 0.96708 0.97332 1.00749 1.22355 0.96738 0.96874 0.97375 1.23847 0.97152 0.97388 0.89741 0.87194 1.22664 0.89252 0.84897 0.99360 0.87846 1.23217 0.94728 0.99083 1.01424 1.23227 0.97605 0.94283 1.03397 1.23231 0.89150 0.96321 0.93858 1.88447 1.37932 1.33447 1.69376 0.94448 0.92352 0.88397 0.88432 0.91076 0.96197 0.99217 0.92426 0.87018 0.88798 0.89791 0.92949 0.87784 0.90539 0.91120 0.90122 0.94547 0.89121 0.91928 0.87257 0.88654 0.90444 0.89888 0.96009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.94 10.24 71.98 0.74 -3.20 16 2 C 0.10 3.11 5.93 86.38 0.51 3.62 16 3 N -0.61 -26.75 2.46 -826.17 -2.03 -28.78 16 4 C 0.27 15.03 5.16 85.63 0.44 15.47 16 5 C -0.54 -32.45 9.39 25.60 0.24 -32.21 16 6 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 7 C 0.01 0.42 5.46 84.66 0.46 0.88 16 8 N -0.93 -58.05 13.29 21.45 0.28 -57.77 16 9 Si 0.97 46.28 29.54 68.60 2.03 48.30 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 12 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 13 C 0.50 22.00 7.74 87.66 0.68 22.68 16 14 O -0.58 -32.97 16.01 -3.04 -0.05 -33.02 16 15 C 0.02 0.47 3.82 85.56 0.33 0.80 16 16 N -0.46 -13.84 5.20 -905.95 -4.71 -18.56 16 17 C 0.02 0.57 7.53 83.96 0.63 1.20 16 18 C -0.09 -1.95 1.20 -52.85 -0.06 -2.01 16 19 C -0.11 -1.55 7.90 30.82 0.24 -1.30 16 20 C -0.14 -2.33 8.08 31.26 0.25 -2.08 16 21 C -0.10 -2.17 6.30 30.81 0.19 -1.97 16 22 C 0.03 0.57 2.67 42.58 0.11 0.68 16 23 H 0.11 1.64 7.91 -2.39 -0.02 1.62 16 24 C 0.10 1.91 2.99 31.06 0.09 2.01 16 25 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 26 C -0.15 -2.56 6.56 31.91 0.21 -2.35 16 27 C -0.15 -2.90 7.16 32.10 0.23 -2.67 16 28 C 0.05 1.41 7.78 72.65 0.57 1.98 16 29 O -0.37 -10.37 8.60 -148.98 -1.28 -11.65 16 30 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.06 1.33 7.22 -2.39 -0.02 1.31 16 32 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 33 H 0.10 2.28 6.44 -2.39 -0.02 2.26 16 34 H 0.07 2.34 8.07 -2.39 -0.02 2.32 16 35 H 0.02 1.14 8.07 -2.38 -0.02 1.12 16 36 H -0.01 -0.68 7.42 -2.39 -0.02 -0.70 16 37 H 0.27 15.63 8.31 -92.70 -0.77 14.86 16 38 H 0.11 2.83 5.43 -2.39 -0.01 2.82 16 39 H 0.09 2.19 6.35 -2.39 -0.02 2.17 16 40 H 0.08 1.92 7.42 -2.39 -0.02 1.90 16 41 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.07 1.27 8.14 -2.39 -0.02 1.26 16 45 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.09 1.96 6.97 -2.39 -0.02 1.94 16 48 H 0.06 1.27 5.91 -2.39 -0.01 1.25 16 49 H 0.11 1.21 8.14 -2.38 -0.02 1.19 16 50 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 51 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 52 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 53 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -82.16 409.63 0.98 -81.18 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: 0.87 Total: 18.77 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: 5.87 Total: 1.51 kcal Atomic # 7 Polarization: -98.65 SS G_CDS: -6.46 Total: -105.10 kcal Atomic # 8 Polarization: -43.34 SS G_CDS: -1.33 Total: -44.67 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.30 kcal Total: -82.16 0.98 -81.18 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377778406.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.641 kcal (2) G-P(sol) polarization free energy of solvation -82.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds