Wall clock time and date at job start Tue Mar 31 2020 19:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47242 * 2 1 4 4 C 1.53004 * 109.46649 * 240.00062 * 2 1 3 5 5 C 1.50707 * 109.46506 * 175.00339 * 4 2 1 6 6 O 1.21276 * 120.00244 * 359.97438 * 5 4 2 7 7 N 1.34780 * 119.99690 * 180.02562 * 5 4 2 8 8 C 1.46500 * 119.99787 * 180.02562 * 7 5 4 9 9 C 1.53003 * 109.46689 * 178.27921 * 8 7 5 10 10 C 1.50699 * 115.55252 * 65.13706 * 9 8 7 11 11 H 1.07995 * 120.00018 * 265.40178 * 10 9 8 12 12 C 1.37869 * 119.99762 * 85.40664 * 10 9 8 13 13 N 1.31515 * 120.00530 * 353.54920 * 12 10 9 14 14 Si 1.86806 * 120.00080 * 173.55362 * 12 10 9 15 15 H 1.48504 * 109.47328 * 89.99550 * 14 12 10 16 16 H 1.48501 * 109.47389 * 209.99661 * 14 12 10 17 17 H 1.48503 * 109.46961 * 329.99785 * 14 12 10 18 18 C 1.53005 * 117.49586 * 279.46640 * 9 8 7 19 19 C 1.53006 * 117.49651 * 210.80955 * 9 8 7 20 20 N 1.46500 * 109.46788 * 120.00262 * 2 1 3 21 21 C 1.34776 * 119.99947 * 274.99592 * 20 2 1 22 22 O 1.21285 * 119.99829 * 0.02562 * 21 20 2 23 23 C 1.50701 * 120.00119 * 179.72980 * 21 20 2 24 24 C 1.53000 * 109.46709 * 300.27441 * 23 21 20 25 25 C 1.52997 * 109.46650 * 179.97438 * 24 23 21 26 26 C 1.53002 * 109.47410 * 60.00083 * 25 24 23 27 27 C 1.52998 * 109.46895 * 300.00100 * 26 25 24 28 28 C 1.52993 * 109.47480 * 59.99574 * 27 26 25 29 29 H 1.09002 * 109.47242 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47152 * 299.99971 * 1 2 3 31 31 H 1.09003 * 109.47217 * 59.99995 * 1 2 3 32 32 H 1.08998 * 109.46795 * 294.99730 * 4 2 1 33 33 H 1.08991 * 109.47359 * 55.00037 * 4 2 1 34 34 H 0.97005 * 119.99686 * 359.97438 * 7 5 4 35 35 H 1.08996 * 109.46895 * 298.26800 * 8 7 5 36 36 H 1.08996 * 109.47268 * 58.27486 * 8 7 5 37 37 H 0.96999 * 120.00321 * 185.07195 * 13 12 10 38 38 H 1.09003 * 117.49727 * 0.02562 * 18 9 8 39 39 H 1.08995 * 117.49623 * 145.02698 * 18 9 8 40 40 H 1.08994 * 117.49854 * 214.97827 * 19 9 8 41 41 H 1.09003 * 117.49524 * 359.97438 * 19 9 8 42 42 H 0.97003 * 120.00088 * 95.00048 * 20 2 1 43 43 H 1.09001 * 109.47118 * 60.27635 * 23 21 20 44 44 H 1.08992 * 109.47287 * 299.99802 * 24 23 21 45 45 H 1.08998 * 109.46931 * 60.00173 * 24 23 21 46 46 H 1.08996 * 109.47733 * 299.99487 * 25 24 23 47 47 H 1.09008 * 109.47184 * 180.02562 * 25 24 23 48 48 H 1.08998 * 109.46841 * 179.97438 * 26 25 24 49 49 H 1.09001 * 109.46859 * 59.99916 * 26 25 24 50 50 H 1.09005 * 109.46563 * 299.99276 * 27 26 25 51 51 H 1.08999 * 109.47020 * 180.02562 * 27 26 25 52 52 H 1.08997 * 109.47032 * 179.97438 * 28 27 26 53 53 H 1.09001 * 109.46878 * 59.99815 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5419 -0.6150 -1.3127 6 8 4.1449 -0.0205 -0.4446 7 7 4.2148 -1.1797 -2.3349 8 6 5.6749 -1.0769 -2.3962 9 6 6.1883 -1.8339 -3.6227 10 6 5.7692 -1.2711 -4.9564 11 1 4.8951 -1.6612 -5.4565 12 6 6.5018 -0.2584 -5.5381 13 7 7.4891 0.3035 -4.8754 14 14 6.0921 0.3160 -7.2678 15 1 5.0935 1.4132 -7.2016 16 1 7.3259 0.8090 -7.9311 17 1 5.5310 -0.8176 -8.0459 18 6 6.3252 -3.3536 -3.5087 19 6 7.5761 -2.4715 -3.5296 20 7 2.0183 -0.6907 1.1962 21 6 2.1470 -0.0184 2.3571 22 8 1.8582 1.1583 2.4117 23 6 2.6435 -0.7303 3.5891 24 6 1.6975 -1.8843 3.9272 25 6 2.2019 -2.6075 5.1776 26 6 2.2487 -1.6260 6.3504 27 6 3.1945 -0.4720 6.0123 28 6 2.6902 0.2512 4.7619 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.7515 -1.7715 -1.2056 33 1 1.6053 -0.2618 -2.1370 34 1 3.7324 -1.6549 -3.0295 35 1 5.9624 -0.0281 -2.4701 36 1 6.1079 -1.5098 -1.4945 37 1 7.9567 1.0642 -5.2543 38 1 6.0490 -3.8140 -2.5600 39 1 6.1125 -3.9461 -4.3984 40 1 8.1857 -2.4842 -4.4329 41 1 8.1234 -2.3512 -2.5946 42 1 2.2489 -1.6319 1.1526 43 1 3.6435 -1.1224 3.4040 44 1 0.6976 -1.4921 4.1123 45 1 1.6646 -2.5837 3.0918 46 1 3.2017 -2.9998 4.9920 47 1 1.5283 -3.4300 5.4182 48 1 2.6076 -2.1414 7.2413 49 1 1.2487 -1.2338 6.5360 50 1 4.1945 -0.8643 5.8267 51 1 3.2282 0.2269 6.8480 52 1 3.3639 1.0736 4.5213 53 1 1.6903 0.6434 4.9475 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431128708.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:01 Heat of formation + Delta-G solvation = -109.993743 kcal Electronic energy + Delta-G solvation = -29798.554991 eV Core-core repulsion = 25861.279097 eV Total energy + Delta-G solvation = -3937.275894 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.38448 -40.50375 -38.73097 -38.36345 -36.64526 -34.87813 -33.97312 -33.15564 -31.65529 -31.30303 -29.54969 -27.79153 -26.71486 -24.91946 -23.49593 -22.99421 -22.44329 -21.39959 -21.32504 -20.94892 -20.54738 -18.50836 -18.06103 -17.67325 -17.40723 -16.66544 -16.49609 -16.32106 -16.02773 -15.80856 -15.45792 -15.10732 -15.00053 -14.89203 -14.58457 -14.39740 -13.95298 -13.83759 -13.76199 -13.48840 -13.25262 -13.25093 -13.06852 -12.95015 -12.87341 -12.77448 -12.75922 -12.34827 -12.21682 -12.04858 -12.04214 -11.95986 -11.53621 -11.49300 -11.35054 -11.00907 -10.87118 -10.82135 -10.58105 -10.46010 -10.08213 -9.94622 -9.77647 -8.10666 -6.23866 1.41365 1.44452 1.52415 1.73371 1.81732 2.30073 2.39364 2.45048 3.18166 3.49464 3.62974 3.70607 3.77445 3.80089 3.94162 4.23651 4.24554 4.27327 4.28764 4.35158 4.45427 4.48649 4.56390 4.56661 4.59212 4.65519 4.66427 4.71029 4.73285 4.74585 4.84506 4.96503 5.00300 5.06710 5.10980 5.12668 5.17329 5.24332 5.25764 5.27663 5.32631 5.35941 5.39577 5.55060 5.59775 5.61914 5.62624 5.71718 5.78584 6.36331 6.62359 6.82299 6.87572 7.35931 7.45874 7.48637 8.96772 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016422 B = 0.002418 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.621134 B =11577.655078 C =12261.820371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.156 3.844 3 H 0.048 0.952 4 C -0.136 4.136 5 C 0.495 3.505 6 O -0.593 6.593 7 N -0.699 5.699 8 C 0.182 3.818 9 C 0.007 3.993 10 C -0.503 4.503 11 H 0.068 0.932 12 C 0.022 3.978 13 N -0.911 5.911 14 Si 0.949 3.051 15 H -0.280 1.280 16 H -0.293 1.293 17 H -0.261 1.261 18 C -0.171 4.171 19 C -0.165 4.165 20 N -0.703 5.703 21 C 0.516 3.484 22 O -0.593 6.593 23 C -0.103 4.103 24 C -0.102 4.102 25 C -0.116 4.116 26 C -0.120 4.120 27 C -0.117 4.117 28 C -0.097 4.097 29 H 0.085 0.915 30 H 0.042 0.958 31 H 0.081 0.919 32 H 0.138 0.862 33 H 0.130 0.870 34 H 0.411 0.589 35 H 0.020 0.980 36 H 0.033 0.967 37 H 0.257 0.743 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.408 0.592 43 H 0.097 0.903 44 H 0.064 0.936 45 H 0.082 0.918 46 H 0.067 0.933 47 H 0.081 0.919 48 H 0.075 0.925 49 H 0.061 0.939 50 H 0.064 0.936 51 H 0.069 0.931 52 H 0.042 0.958 53 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.618 -10.076 16.026 24.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.050 3.950 3 H 0.067 0.933 4 C -0.176 4.176 5 C 0.282 3.718 6 O -0.474 6.474 7 N -0.349 5.349 8 C 0.057 3.943 9 C 0.006 3.994 10 C -0.540 4.540 11 H 0.086 0.914 12 C -0.179 4.179 13 N -0.548 5.548 14 Si 0.775 3.225 15 H -0.206 1.206 16 H -0.219 1.219 17 H -0.185 1.185 18 C -0.208 4.208 19 C -0.203 4.203 20 N -0.354 5.354 21 C 0.303 3.697 22 O -0.474 6.474 23 C -0.124 4.124 24 C -0.140 4.140 25 C -0.153 4.153 26 C -0.157 4.157 27 C -0.154 4.154 28 C -0.135 4.135 29 H 0.103 0.897 30 H 0.061 0.939 31 H 0.100 0.900 32 H 0.156 0.844 33 H 0.148 0.852 34 H 0.247 0.753 35 H 0.039 0.961 36 H 0.051 0.949 37 H 0.066 0.934 38 H 0.110 0.890 39 H 0.105 0.895 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.244 0.756 43 H 0.115 0.885 44 H 0.082 0.918 45 H 0.100 0.900 46 H 0.086 0.914 47 H 0.100 0.900 48 H 0.094 0.906 49 H 0.080 0.920 50 H 0.083 0.917 51 H 0.087 0.913 52 H 0.061 0.939 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.202 -8.744 16.585 24.137 hybrid contribution 0.684 0.674 -1.477 1.762 sum -14.518 -8.070 15.108 22.453 Atomic orbital electron populations 1.22080 0.92512 1.03728 1.02496 1.20631 0.94868 0.96089 0.83392 0.93342 1.22066 0.89464 1.05822 1.00261 1.21405 0.91556 0.77883 0.80924 1.90699 1.71681 1.44217 1.40789 1.45877 1.07563 1.55465 1.25996 1.20455 0.79966 0.98292 0.95551 1.19052 0.96792 0.90271 0.93301 1.20695 1.11522 1.19360 1.02450 0.91436 1.25733 0.94541 0.96892 1.00684 1.70111 1.23144 1.22120 1.39452 0.85695 0.77198 0.78687 0.80900 1.20597 1.21884 1.18475 1.23003 1.02262 0.93995 1.01546 1.22432 0.91692 1.06508 0.99695 1.45837 1.66472 1.14071 1.09012 1.21123 0.76173 0.86695 0.85676 1.90639 1.52423 1.18179 1.86117 1.21370 1.01617 0.97588 0.91815 1.21506 0.97728 0.95140 0.99589 1.21541 1.02141 0.97942 0.93707 1.21564 0.99595 0.96028 0.98509 1.21549 0.99555 0.97915 0.96396 1.21284 1.01348 0.96760 0.94123 0.89657 0.93898 0.90042 0.84443 0.85214 0.75258 0.96112 0.94916 0.93362 0.89036 0.89469 0.92026 0.91425 0.75592 0.88517 0.91770 0.89984 0.91401 0.90014 0.90620 0.91995 0.91714 0.91273 0.93938 0.92397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.48 71.98 0.68 -1.97 16 2 C 0.16 3.77 2.13 44.99 0.10 3.86 16 3 H 0.05 1.65 7.39 -2.39 -0.02 1.63 16 4 C -0.14 -2.78 5.24 29.85 0.16 -2.63 16 5 C 0.49 16.36 7.69 87.66 0.67 17.03 16 6 O -0.59 -25.51 15.35 -3.02 -0.05 -25.56 16 7 N -0.70 -24.39 5.47 -463.06 -2.54 -26.93 16 8 C 0.18 8.09 5.50 86.38 0.48 8.56 16 9 C 0.01 0.29 1.38 -52.92 -0.07 0.22 16 10 C -0.50 -24.88 8.63 25.60 0.22 -24.66 16 11 H 0.07 3.17 7.82 -2.91 -0.02 3.15 16 12 C 0.02 1.15 5.39 84.65 0.46 1.61 16 13 N -0.91 -51.65 12.91 21.44 0.28 -51.38 16 14 Si 0.95 41.68 29.55 68.60 2.03 43.71 16 15 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 16 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 17 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 18 C -0.17 -6.41 9.96 30.62 0.30 -6.10 16 19 C -0.16 -7.37 9.42 30.62 0.29 -7.08 16 20 N -0.70 -16.67 4.11 -442.52 -1.82 -18.49 16 21 C 0.52 14.75 7.12 87.66 0.62 15.37 16 22 O -0.59 -22.42 15.65 -3.04 -0.05 -22.47 16 23 C -0.10 -2.19 2.53 -11.54 -0.03 -2.22 16 24 C -0.10 -1.46 5.10 30.59 0.16 -1.30 16 25 C -0.12 -1.32 5.92 30.59 0.18 -1.14 16 26 C -0.12 -1.48 5.92 30.59 0.18 -1.30 16 27 C -0.12 -1.87 5.92 30.59 0.18 -1.69 16 28 C -0.10 -2.17 4.49 30.59 0.14 -2.03 16 29 H 0.08 1.04 8.14 -2.39 -0.02 1.03 16 30 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.14 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.41 12.30 8.37 -92.70 -0.78 11.52 16 35 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.03 1.44 8.09 -2.39 -0.02 1.43 16 37 H 0.26 14.19 8.32 -92.71 -0.77 13.42 16 38 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 39 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 40 H 0.06 2.99 8.14 -2.39 -0.02 2.97 16 41 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 42 H 0.41 7.37 8.01 -92.71 -0.74 6.62 16 43 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.06 0.97 8.14 -2.39 -0.02 0.96 16 45 H 0.08 0.91 7.55 -2.39 -0.02 0.89 16 46 H 0.07 0.76 8.14 -2.39 -0.02 0.75 16 47 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 48 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 49 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 50 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 51 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 52 H 0.04 1.15 8.10 -2.39 -0.02 1.13 16 53 H 0.06 1.38 8.10 -2.39 -0.02 1.36 16 Total: -1.00 -73.41 424.51 1.94 -71.47 By element: Atomic # 1 Polarization: 35.74 SS G_CDS: -0.63 Total: 35.10 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: 4.71 Total: -5.47 kcal Atomic # 7 Polarization: -92.71 SS G_CDS: -4.08 Total: -96.79 kcal Atomic # 8 Polarization: -47.93 SS G_CDS: -0.09 Total: -48.02 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Total: -73.41 1.94 -71.47 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431128708.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.522 kcal (2) G-P(sol) polarization free energy of solvation -73.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds