Wall clock time and date at job start Tue Mar 31 2020 21:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.46977 * 2 1 4 4 C 1.46497 * 120.00318 * 269.99839 * 3 2 1 5 5 C 1.50702 * 109.47634 * 270.00142 * 4 3 2 6 6 H 1.08000 * 119.99469 * 359.97438 * 5 4 3 7 7 C 1.37870 * 120.00297 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00230 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00029 * 180.02562 * 7 5 4 10 10 H 1.48509 * 109.47252 * 89.99614 * 9 7 5 11 11 H 1.48500 * 109.47244 * 209.99646 * 9 7 5 12 12 H 1.48503 * 109.46969 * 330.00065 * 9 7 5 13 13 C 1.34777 * 120.00023 * 89.99897 * 3 2 1 14 14 O 1.21284 * 120.00226 * 179.97438 * 13 3 2 15 15 C 1.50704 * 120.00033 * 0.02562 * 13 3 2 16 16 N 1.46898 * 109.46873 * 179.97438 * 15 13 3 17 17 C 1.46907 * 110.99847 * 179.97438 * 16 15 13 18 18 H 1.09007 * 112.86372 * 23.89394 * 17 16 15 19 19 C 1.53801 * 113.57001 * 252.79066 * 17 16 15 20 20 H 1.09003 * 116.28489 * 340.38241 * 19 17 16 21 21 C 1.54449 * 113.45835 * 117.54642 * 19 17 16 22 22 C 1.54450 * 104.14418 * 93.81182 * 21 19 17 23 23 O 1.45122 * 104.62986 * 335.23875 * 22 21 19 24 24 C 1.44250 * 105.09896 * 41.08605 * 23 22 21 25 25 H 1.09000 * 115.48201 * 88.92073 * 24 23 22 26 26 C 1.52930 * 113.65320 * 226.29742 * 24 23 22 27 27 C 1.53609 * 115.04622 * 197.93186 * 26 24 23 28 28 C 1.55057 * 104.02959 * 152.80741 * 27 26 24 29 29 C 1.54952 * 102.85536 * 322.71012 * 28 27 26 30 30 C 1.53259 * 115.26113 * 323.66162 * 26 24 23 31 31 H 1.08999 * 109.46854 * 60.00299 * 1 2 3 32 32 H 1.09005 * 109.46781 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47382 * 300.00002 * 1 2 3 34 34 H 1.08997 * 109.47382 * 239.99998 * 2 1 3 35 35 H 1.09002 * 109.47357 * 119.99802 * 2 1 3 36 36 H 1.09001 * 109.47068 * 30.00028 * 4 3 2 37 37 H 1.09002 * 109.47704 * 149.99626 * 4 3 2 38 38 H 0.96994 * 119.99817 * 180.02562 * 8 7 5 39 39 H 1.08997 * 109.46940 * 59.99880 * 15 13 3 40 40 H 1.08998 * 109.46994 * 299.99640 * 15 13 3 41 41 H 1.00898 * 111.00336 * 303.94781 * 16 15 13 42 42 H 1.09004 * 110.49334 * 212.47608 * 21 19 17 43 43 H 1.08992 * 110.49504 * 335.01351 * 21 19 17 44 44 H 1.09001 * 110.36670 * 94.41042 * 22 21 19 45 45 H 1.09003 * 110.36944 * 216.63592 * 22 21 19 46 46 H 1.08990 * 110.52042 * 34.16779 * 27 26 24 47 47 H 1.09002 * 110.51365 * 271.44040 * 27 26 24 48 48 H 1.08997 * 110.73586 * 81.05440 * 28 27 26 49 49 H 1.08995 * 110.73033 * 204.36594 * 28 27 26 50 50 H 1.09001 * 110.48241 * 156.25191 * 29 28 27 51 51 H 1.09001 * 110.47882 * 278.87946 * 29 28 27 52 52 H 1.09001 * 110.08487 * 111.46267 * 30 26 24 53 53 H 1.08997 * 110.13755 * 349.90735 * 30 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8352 -1.7038 6 1 4.3429 1.2310 -1.0958 7 6 4.1491 2.3898 -2.8779 8 7 3.3488 3.1251 -3.6185 9 14 5.9131 2.0958 -3.4175 10 1 5.9760 0.8745 -4.2602 11 1 6.3922 3.2629 -4.2008 12 1 6.7734 1.9160 -2.2205 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1599 1.1672 15 6 1.9923 1.3060 2.4723 16 7 2.3109 2.2059 3.5888 17 6 2.0774 1.5456 4.8802 18 1 2.1243 0.4586 4.8147 19 6 0.8326 2.0641 5.6199 20 1 0.4600 3.0410 5.3116 21 6 -0.2496 0.9834 5.8346 22 6 0.0528 0.4204 7.2406 23 8 1.4646 0.6864 7.4461 24 6 1.6776 2.0125 6.9198 25 1 1.5281 2.8276 7.6278 26 6 2.9115 2.1260 6.0234 27 6 3.4210 3.5572 5.7966 28 6 4.9360 3.3774 5.5195 29 6 5.3285 2.2285 6.4823 30 6 4.1125 1.2767 6.4534 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8934 -0.5138 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 1.5817 1.6878 -2.0284 37 1 2.0954 3.1411 -1.1384 38 1 3.6746 3.5150 -4.4447 39 1 2.6228 0.4188 2.5299 40 1 0.9444 1.0115 2.5303 41 1 3.2592 2.5440 3.5215 42 1 -1.2442 1.4286 5.8075 43 1 -0.1622 0.2008 5.0810 44 1 -0.5496 0.9315 7.9916 45 1 -0.1371 -0.6526 7.2686 46 1 3.2652 4.1641 6.6884 47 1 2.9260 4.0070 4.9359 48 1 5.1070 3.0876 4.4828 49 1 5.4833 4.2882 5.7620 50 1 6.2215 1.7175 6.1223 51 1 5.4880 2.6128 7.4897 52 1 4.2813 0.4756 5.7337 53 1 3.9407 0.8585 7.4452 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000450862270.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:34 Heat of formation + Delta-G solvation = -78.357793 kcal Electronic energy + Delta-G solvation = -30946.970577 eV Core-core repulsion = 27011.066521 eV Total energy + Delta-G solvation = -3935.904056 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.39434 -40.64025 -38.41907 -36.99169 -36.12976 -34.91173 -33.75032 -31.90412 -31.60320 -29.78087 -29.53268 -27.56112 -27.15331 -24.95461 -24.30517 -23.58575 -23.48016 -22.02816 -20.80921 -20.13512 -19.20501 -18.60371 -17.99477 -17.54441 -17.21621 -17.04618 -16.72997 -16.46654 -16.11913 -16.00413 -15.35481 -15.10590 -14.86348 -14.74027 -14.63555 -14.24250 -14.19441 -13.75972 -13.67689 -13.54034 -13.45317 -13.27463 -13.18554 -12.93446 -12.67619 -12.60877 -12.47279 -12.21664 -12.13197 -11.95988 -11.93497 -11.85683 -11.81073 -11.71823 -11.50366 -11.47214 -11.42644 -10.87676 -10.64592 -10.62089 -10.40069 -9.42975 -9.36103 -8.22478 -6.37549 1.35263 1.38353 1.48567 1.86656 2.24967 2.41702 2.72618 3.06630 3.16675 3.33328 3.53347 3.60341 3.75597 3.80809 3.91102 4.08176 4.10487 4.25964 4.28527 4.31279 4.34237 4.35879 4.38143 4.46519 4.52129 4.56189 4.64828 4.70190 4.71249 4.79199 4.91291 4.94649 4.98725 4.99435 5.01076 5.05477 5.06641 5.07353 5.19375 5.21329 5.23355 5.29880 5.36671 5.38505 5.44981 5.47316 5.57973 5.85015 5.92589 6.05565 6.07470 6.29786 6.70659 6.83512 7.28678 7.52505 8.84484 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013634 B = 0.003141 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.244953 B = 8910.958095 C =10278.653825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.604 5.604 4 C 0.264 3.736 5 C -0.542 4.542 6 H 0.052 0.948 7 C 0.007 3.993 8 N -0.928 5.928 9 Si 0.968 3.032 10 H -0.263 1.263 11 H -0.281 1.281 12 H -0.273 1.273 13 C 0.495 3.505 14 O -0.584 6.584 15 C 0.058 3.942 16 N -0.668 5.668 17 C 0.086 3.914 18 H 0.078 0.922 19 C -0.124 4.124 20 H 0.107 0.893 21 C -0.145 4.145 22 C 0.045 3.955 23 O -0.376 6.376 24 C 0.063 3.937 25 H 0.102 0.898 26 C -0.075 4.075 27 C -0.101 4.101 28 C -0.127 4.127 29 C -0.121 4.121 30 C -0.104 4.104 31 H 0.037 0.963 32 H 0.095 0.905 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.097 0.903 36 H 0.020 0.980 37 H -0.005 1.005 38 H 0.267 0.733 39 H 0.071 0.929 40 H 0.117 0.883 41 H 0.345 0.655 42 H 0.087 0.913 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.102 0.898 46 H 0.082 0.918 47 H 0.070 0.930 48 H 0.049 0.951 49 H 0.075 0.925 50 H 0.064 0.936 51 H 0.075 0.925 52 H 0.054 0.946 53 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.959 -8.488 24.006 26.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.022 4.022 3 N -0.336 5.336 4 C 0.143 3.857 5 C -0.580 4.580 6 H 0.070 0.930 7 C -0.192 4.192 8 N -0.568 5.568 9 Si 0.792 3.208 10 H -0.188 1.188 11 H -0.206 1.206 12 H -0.198 1.198 13 C 0.283 3.717 14 O -0.464 6.464 15 C -0.074 4.074 16 N -0.301 5.301 17 C -0.024 4.024 18 H 0.095 0.905 19 C -0.143 4.143 20 H 0.125 0.875 21 C -0.183 4.183 22 C -0.031 4.031 23 O -0.296 6.296 24 C 0.004 3.996 25 H 0.119 0.881 26 C -0.076 4.076 27 C -0.139 4.139 28 C -0.164 4.164 29 C -0.158 4.158 30 C -0.142 4.142 31 H 0.057 0.943 32 H 0.114 0.886 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.115 0.885 36 H 0.038 0.962 37 H 0.013 0.987 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.135 0.865 41 H 0.166 0.834 42 H 0.106 0.894 43 H 0.094 0.906 44 H 0.090 0.910 45 H 0.120 0.880 46 H 0.101 0.899 47 H 0.089 0.911 48 H 0.068 0.932 49 H 0.094 0.906 50 H 0.083 0.917 51 H 0.094 0.906 52 H 0.072 0.928 53 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.221 -7.662 23.898 25.856 hybrid contribution 1.379 -0.208 -1.120 1.789 sum -4.842 -7.870 22.778 24.581 Atomic orbital electron populations 1.22144 0.94541 1.03456 1.01657 1.21728 0.95358 0.81434 1.03725 1.48272 1.64135 1.15017 1.06204 1.18658 0.95182 0.91439 0.80440 1.21701 0.97885 1.31959 1.06500 0.92971 1.25862 1.02396 0.94465 0.96452 1.70056 1.37782 1.34241 1.14739 0.85418 0.78996 0.78197 0.78202 1.18805 1.20628 1.19782 1.21224 0.77372 0.86666 0.86404 1.90635 1.47550 1.20370 1.87881 1.21854 1.03870 0.94093 0.87564 1.60356 1.32032 1.37271 1.00407 1.23017 0.96313 0.96378 0.86687 0.90450 1.24145 0.94172 1.00254 0.95746 0.87465 1.22886 0.99494 0.98150 0.97735 1.23750 0.81543 1.02189 0.95657 1.89134 1.26350 1.31487 1.82590 1.23889 0.96294 0.86211 0.93175 0.88088 1.22244 0.93798 0.96819 0.94698 1.22057 0.95443 0.94003 1.02389 1.22539 0.95834 0.99185 0.98866 1.22400 0.97519 0.96072 0.99848 1.21939 0.93382 0.97318 1.01512 0.94334 0.88607 0.92172 0.91036 0.88489 0.96206 0.98715 0.92423 0.91113 0.86512 0.83434 0.89409 0.90611 0.90977 0.87951 0.89904 0.91129 0.93229 0.90603 0.91736 0.90595 0.92761 0.90967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.95 10.24 71.98 0.74 -3.21 16 2 C 0.10 3.05 5.93 86.38 0.51 3.56 16 3 N -0.60 -25.84 2.46 -826.15 -2.03 -27.87 16 4 C 0.26 14.53 5.16 85.63 0.44 14.97 16 5 C -0.54 -31.67 9.39 25.60 0.24 -31.43 16 6 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 7 C 0.01 0.42 5.46 84.65 0.46 0.88 16 8 N -0.93 -56.89 13.29 21.45 0.28 -56.61 16 9 Si 0.97 45.37 29.54 68.60 2.03 47.40 16 10 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 12 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 13 C 0.49 20.83 7.71 87.66 0.68 21.51 16 14 O -0.58 -30.76 15.78 -3.04 -0.05 -30.81 16 15 C 0.06 1.68 4.56 85.56 0.39 2.07 16 16 N -0.67 -18.76 5.22 -494.25 -2.58 -21.34 16 17 C 0.09 1.85 2.89 45.17 0.13 1.98 16 18 H 0.08 1.67 7.62 -2.38 -0.02 1.65 16 19 C -0.12 -2.31 4.72 -9.30 -0.04 -2.35 16 20 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 21 C -0.14 -2.08 6.66 31.58 0.21 -1.87 16 22 C 0.04 0.60 7.65 72.47 0.55 1.15 16 23 O -0.38 -7.18 10.42 -148.98 -1.55 -8.73 16 24 C 0.06 1.13 4.72 31.30 0.15 1.28 16 25 H 0.10 1.62 8.12 -2.39 -0.02 1.60 16 26 C -0.07 -1.48 0.97 -51.93 -0.05 -1.54 16 27 C -0.10 -2.09 5.34 31.50 0.17 -1.92 16 28 C -0.13 -2.64 6.77 31.97 0.22 -2.42 16 29 C -0.12 -2.21 6.84 31.75 0.22 -1.99 16 30 C -0.10 -2.03 6.05 31.17 0.19 -1.84 16 31 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 33 H 0.06 1.38 7.22 -2.39 -0.02 1.36 16 34 H 0.07 2.33 8.07 -2.39 -0.02 2.31 16 35 H 0.10 2.29 6.44 -2.39 -0.02 2.27 16 36 H 0.02 1.11 8.07 -2.39 -0.02 1.09 16 37 H -0.01 -0.34 7.42 -2.39 -0.02 -0.35 16 38 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 39 H 0.07 1.78 7.39 -2.39 -0.02 1.76 16 40 H 0.12 2.81 7.19 -2.39 -0.02 2.79 16 41 H 0.34 10.87 6.22 -89.70 -0.56 10.31 16 42 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.08 1.09 7.92 -2.39 -0.02 1.07 16 44 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.08 1.45 8.09 -2.39 -0.02 1.43 16 47 H 0.07 1.77 6.74 -2.39 -0.02 1.76 16 48 H 0.05 1.23 7.36 -2.39 -0.02 1.21 16 49 H 0.08 1.43 8.14 -2.39 -0.02 1.42 16 50 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 51 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 52 H 0.05 1.13 7.89 -2.39 -0.02 1.11 16 53 H 0.07 1.42 7.44 -2.39 -0.02 1.40 16 Total: -1.00 -73.79 407.69 1.63 -72.16 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: 0.32 Total: 26.97 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: 5.20 Total: -1.18 kcal Atomic # 7 Polarization: -101.49 SS G_CDS: -4.32 Total: -105.81 kcal Atomic # 8 Polarization: -37.94 SS G_CDS: -1.60 Total: -39.54 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -73.79 1.63 -72.16 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450862270.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.194 kcal (2) G-P(sol) polarization free energy of solvation -73.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds