Wall clock time and date at job start Tue Mar 31 2020 21:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47105 * 2 1 4 4 C 1.46504 * 119.99991 * 269.99892 * 3 2 1 5 5 C 1.50694 * 109.47473 * 270.00192 * 4 3 2 6 6 H 1.08006 * 119.99884 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00331 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99792 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00389 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46897 * 60.00259 * 9 7 5 11 11 H 1.48503 * 109.47333 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47166 * 300.00188 * 9 7 5 13 13 C 1.34776 * 120.00290 * 90.00494 * 3 2 1 14 14 O 1.21282 * 119.99837 * 180.02562 * 13 3 2 15 15 C 1.50697 * 119.99767 * 359.97438 * 13 3 2 16 16 N 1.46901 * 109.46943 * 180.02562 * 15 13 3 17 17 C 1.46905 * 110.99870 * 180.02562 * 16 15 13 18 18 H 1.09001 * 112.81576 * 25.33262 * 17 16 15 19 19 C 1.53831 * 113.57171 * 254.26844 * 17 16 15 20 20 H 1.09006 * 116.29480 * 150.40265 * 19 17 16 21 21 C 1.54391 * 112.96886 * 13.05348 * 19 17 16 22 22 C 1.54446 * 104.24876 * 266.54834 * 21 19 17 23 23 O 1.44370 * 104.80677 * 24.33792 * 22 21 19 24 24 C 1.44270 * 105.50269 * 319.53361 * 23 22 21 25 25 H 1.09007 * 114.88043 * 269.74423 * 24 23 22 26 26 C 1.52939 * 113.60659 * 133.08189 * 24 23 22 27 27 C 1.53647 * 114.99831 * 36.08053 * 26 24 23 28 28 C 1.55041 * 103.99056 * 106.57259 * 27 26 24 29 29 C 1.54943 * 102.84513 * 37.38347 * 28 27 26 30 30 C 1.53208 * 115.31536 * 161.81432 * 26 24 23 31 31 H 1.09001 * 109.46734 * 299.99636 * 1 2 3 32 32 H 1.08992 * 109.47153 * 59.99893 * 1 2 3 33 33 H 1.09000 * 109.47130 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.46906 * 239.99837 * 2 1 3 35 35 H 1.09002 * 109.47667 * 120.00186 * 2 1 3 36 36 H 1.08999 * 109.47061 * 30.00401 * 4 3 2 37 37 H 1.08996 * 109.47411 * 149.99808 * 4 3 2 38 38 H 0.96997 * 119.99699 * 179.97438 * 8 7 5 39 39 H 1.09004 * 109.46763 * 60.00720 * 15 13 3 40 40 H 1.08995 * 109.47483 * 300.00377 * 15 13 3 41 41 H 1.00901 * 111.00067 * 303.95401 * 16 15 13 42 42 H 1.09002 * 110.45246 * 147.84913 * 21 19 17 43 43 H 1.09001 * 110.56289 * 25.30093 * 21 19 17 44 44 H 1.08998 * 110.37523 * 265.50214 * 22 21 19 45 45 H 1.08998 * 110.46685 * 143.21171 * 22 21 19 46 46 H 1.09003 * 110.51817 * 225.19376 * 27 26 24 47 47 H 1.08998 * 110.52601 * 347.93792 * 27 26 24 48 48 H 1.09008 * 110.73760 * 279.04001 * 28 27 26 49 49 H 1.09005 * 110.74001 * 155.72445 * 28 27 26 50 50 H 1.08994 * 110.48554 * 203.71122 * 29 28 27 51 51 H 1.09002 * 110.47986 * 81.07763 * 29 28 27 52 52 H 1.09006 * 110.08881 * 349.44377 * 30 26 24 53 53 H 1.08997 * 110.08956 * 111.02374 * 30 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6857 1.8350 -1.7038 6 1 4.3426 1.2302 -1.0963 7 6 4.1490 2.3896 -2.8780 8 7 3.3487 3.1249 -3.6187 9 14 5.9134 2.0967 -3.4170 10 1 6.1416 0.6400 -3.5938 11 1 6.1605 2.7956 -4.7038 12 1 6.8406 2.6210 -2.3823 13 6 2.2430 2.0166 1.1672 14 8 2.6469 3.1602 1.1671 15 6 1.9914 1.3063 2.4722 16 7 2.3093 2.2065 3.5888 17 6 2.0760 1.5462 4.8802 18 1 2.1484 0.4604 4.8189 19 6 0.8105 2.0385 5.6031 20 1 0.3117 1.3162 6.2493 21 6 -0.1147 2.8766 4.6947 22 6 0.3194 4.3361 4.9529 23 8 1.6841 4.2391 5.4140 24 6 1.7132 3.0968 6.2947 25 1 1.5094 3.3199 7.3421 26 6 2.8841 2.1492 6.0302 27 6 4.1941 2.8360 5.6144 28 6 5.0954 2.7159 6.8702 29 6 4.7372 1.3115 7.4181 30 6 3.2175 1.1848 7.1731 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 1.5817 1.6877 -2.0284 37 1 2.0955 3.1410 -1.1385 38 1 3.6747 3.5153 -4.4445 39 1 2.6214 0.4187 2.5301 40 1 0.9434 1.0125 2.5299 41 1 3.2576 2.5446 3.5220 42 1 -1.1577 2.7331 4.9772 43 1 0.0358 2.6133 3.6477 44 1 -0.3089 4.7889 5.7199 45 1 0.2706 4.9170 4.0319 46 1 4.6458 2.3173 4.7688 47 1 4.0159 3.8833 5.3706 48 1 4.8483 3.4888 7.5980 49 1 6.1490 2.7658 6.5954 50 1 4.9581 1.2501 8.4837 51 1 5.2775 0.5393 6.8705 52 1 2.6686 1.4655 8.0720 53 1 2.9686 0.1633 6.8856 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000450862271.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:38 Heat of formation + Delta-G solvation = -71.265513 kcal Electronic energy + Delta-G solvation = -31297.956990 eV Core-core repulsion = 27362.360478 eV Total energy + Delta-G solvation = -3935.596512 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.38047 -40.60370 -38.21441 -36.99439 -36.16138 -34.91467 -33.66476 -31.79658 -31.59244 -29.83399 -29.36582 -27.45099 -27.12753 -24.97962 -24.38661 -23.68548 -23.51977 -21.57286 -20.95329 -20.00651 -19.11598 -18.59961 -17.79990 -17.62066 -17.38588 -16.99491 -16.80117 -16.33908 -16.20617 -15.84049 -15.43570 -14.96840 -14.73369 -14.70953 -14.60718 -14.28068 -14.10077 -13.77591 -13.66337 -13.46801 -13.35528 -13.20744 -13.13982 -12.90486 -12.65155 -12.52764 -12.47952 -12.18357 -12.06498 -11.94290 -11.87686 -11.81691 -11.79475 -11.73924 -11.52402 -11.37574 -11.26394 -10.73203 -10.65319 -10.55689 -10.27575 -9.41473 -9.22534 -8.22960 -6.38247 1.34333 1.39058 1.46260 1.88852 2.24797 2.41193 2.85500 3.06072 3.14374 3.36745 3.55941 3.75438 3.83160 3.90826 3.94522 4.09487 4.17910 4.27147 4.34467 4.35405 4.39549 4.45186 4.47787 4.53030 4.56797 4.60000 4.66838 4.72758 4.75333 4.84613 4.88715 4.96231 4.99274 4.99915 5.02965 5.05351 5.06825 5.11378 5.21927 5.24275 5.29637 5.39078 5.43890 5.46816 5.48153 5.50533 5.57513 5.86533 6.05737 6.07572 6.21978 6.39220 6.70123 6.85143 7.28307 7.54941 8.83846 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.012873 B = 0.003264 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.598351 B = 8576.488648 C = 9441.120189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.605 5.605 4 C 0.266 3.734 5 C -0.543 4.543 6 H 0.052 0.948 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.967 3.033 10 H -0.259 1.259 11 H -0.278 1.278 12 H -0.279 1.279 13 C 0.494 3.506 14 O -0.585 6.585 15 C 0.060 3.940 16 N -0.657 5.657 17 C 0.079 3.921 18 H 0.078 0.922 19 C -0.121 4.121 20 H 0.137 0.863 21 C -0.130 4.130 22 C 0.056 3.944 23 O -0.373 6.373 24 C 0.058 3.942 25 H 0.097 0.903 26 C -0.077 4.077 27 C -0.112 4.112 28 C -0.122 4.122 29 C -0.120 4.120 30 C -0.091 4.091 31 H 0.059 0.941 32 H 0.036 0.964 33 H 0.096 0.904 34 H 0.070 0.930 35 H 0.099 0.901 36 H 0.020 0.980 37 H -0.008 1.008 38 H 0.267 0.733 39 H 0.074 0.926 40 H 0.118 0.882 41 H 0.343 0.657 42 H 0.082 0.918 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.049 0.951 47 H 0.051 0.949 48 H 0.067 0.933 49 H 0.062 0.938 50 H 0.081 0.919 51 H 0.064 0.936 52 H 0.084 0.916 53 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.094 -10.403 25.227 27.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.022 4.022 3 N -0.337 5.337 4 C 0.144 3.856 5 C -0.582 4.582 6 H 0.071 0.929 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.791 3.209 10 H -0.183 1.183 11 H -0.203 1.203 12 H -0.205 1.205 13 C 0.282 3.718 14 O -0.465 6.465 15 C -0.072 4.072 16 N -0.290 5.290 17 C -0.031 4.031 18 H 0.096 0.904 19 C -0.140 4.140 20 H 0.155 0.845 21 C -0.168 4.168 22 C -0.020 4.020 23 O -0.292 6.292 24 C 0.000 4.000 25 H 0.115 0.885 26 C -0.078 4.078 27 C -0.150 4.150 28 C -0.160 4.160 29 C -0.157 4.157 30 C -0.129 4.129 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.115 0.885 34 H 0.089 0.911 35 H 0.117 0.883 36 H 0.038 0.962 37 H 0.010 0.990 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.136 0.864 41 H 0.165 0.835 42 H 0.101 0.899 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.067 0.933 47 H 0.070 0.930 48 H 0.086 0.914 49 H 0.081 0.919 50 H 0.099 0.901 51 H 0.083 0.917 52 H 0.103 0.897 53 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.334 -9.265 24.944 27.353 hybrid contribution 1.463 0.079 -1.256 1.930 sum -4.871 -9.187 23.688 25.869 Atomic orbital electron populations 1.22142 0.94573 1.03467 1.01591 1.21729 0.95323 0.81376 1.03763 1.48279 1.64238 1.15063 1.06146 1.18625 0.95150 0.91312 0.80515 1.21685 0.97931 1.32037 1.06513 0.92930 1.25872 1.02419 0.94459 0.96430 1.70053 1.37833 1.34203 1.14785 0.85478 0.78959 0.79088 0.77336 1.18291 1.20285 1.20468 1.21280 0.77360 0.86643 0.86481 1.90656 1.47498 1.20509 1.87870 1.21871 1.03872 0.94003 0.87424 1.59919 1.32354 1.36843 0.99904 1.22575 0.96542 0.96397 0.87623 0.90410 1.24248 0.94282 0.98387 0.97112 0.84530 1.22602 0.99201 0.93979 1.01007 1.23302 0.82864 0.97596 0.98247 1.89021 1.28245 1.48006 1.63958 1.24127 0.96853 0.85252 0.93724 0.88523 1.22285 0.93386 0.95828 0.96282 1.22067 0.95129 1.00039 0.97775 1.22504 0.98849 0.98116 0.96489 1.22394 0.95615 0.96170 1.01538 1.21847 0.96338 0.98324 0.96371 0.92164 0.94487 0.88531 0.91134 0.88284 0.96241 0.98999 0.92422 0.90875 0.86450 0.83543 0.89897 0.91595 0.91724 0.91938 0.93254 0.93001 0.91416 0.91925 0.90067 0.91689 0.89698 0.89875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.93 10.24 71.98 0.74 -3.20 16 2 C 0.10 3.06 5.93 86.38 0.51 3.57 16 3 N -0.61 -26.12 2.46 -826.17 -2.03 -28.15 16 4 C 0.27 14.79 5.16 85.63 0.44 15.23 16 5 C -0.54 -32.11 9.39 25.60 0.24 -31.87 16 6 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16 7 C 0.01 0.42 5.46 84.65 0.46 0.88 16 8 N -0.93 -57.63 13.29 21.45 0.28 -57.34 16 9 Si 0.97 45.85 29.54 68.60 2.03 47.88 16 10 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 13 C 0.49 21.11 7.71 87.66 0.68 21.78 16 14 O -0.59 -31.83 15.78 -3.03 -0.05 -31.88 16 15 C 0.06 1.72 4.12 85.56 0.35 2.08 16 16 N -0.66 -18.99 3.88 -494.20 -1.92 -20.91 16 17 C 0.08 1.58 3.61 45.18 0.16 1.75 16 18 H 0.08 1.29 7.58 -2.39 -0.02 1.27 16 19 C -0.12 -2.07 4.98 -9.24 -0.05 -2.12 16 20 H 0.14 1.48 8.14 -2.38 -0.02 1.46 16 21 C -0.13 -2.73 6.26 31.56 0.20 -2.53 16 22 C 0.06 1.42 7.62 72.47 0.55 1.97 16 23 O -0.37 -10.77 9.43 -148.98 -1.41 -12.17 16 24 C 0.06 1.18 4.75 31.38 0.15 1.33 16 25 H 0.10 1.62 8.01 -2.38 -0.02 1.60 16 26 C -0.08 -1.45 1.03 -51.93 -0.05 -1.50 16 27 C -0.11 -2.66 4.93 31.51 0.16 -2.50 16 28 C -0.12 -2.21 6.91 31.96 0.22 -1.99 16 29 C -0.12 -1.60 6.84 31.75 0.22 -1.39 16 30 C -0.09 -1.14 6.18 31.16 0.19 -0.94 16 31 H 0.06 1.38 7.22 -2.39 -0.02 1.36 16 32 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.07 2.30 8.07 -2.39 -0.02 2.28 16 35 H 0.10 2.29 6.44 -2.39 -0.02 2.27 16 36 H 0.02 1.11 8.07 -2.39 -0.02 1.09 16 37 H -0.01 -0.53 7.42 -2.39 -0.02 -0.55 16 38 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 39 H 0.07 1.77 7.39 -2.39 -0.02 1.75 16 40 H 0.12 2.77 6.55 -2.39 -0.02 2.76 16 41 H 0.34 11.72 5.95 -89.69 -0.53 11.19 16 42 H 0.08 1.33 8.14 -2.39 -0.02 1.32 16 43 H 0.07 1.73 5.99 -2.39 -0.01 1.72 16 44 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.05 1.29 7.06 -2.39 -0.02 1.27 16 47 H 0.05 1.55 7.04 -2.39 -0.02 1.53 16 48 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 49 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 50 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 51 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 52 H 0.08 0.82 7.83 -2.38 -0.02 0.81 16 53 H 0.08 0.84 7.72 -2.39 -0.02 0.82 16 Total: -1.00 -78.13 402.71 2.44 -75.70 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: 0.36 Total: 26.34 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: 5.17 Total: 0.54 kcal Atomic # 7 Polarization: -102.75 SS G_CDS: -3.66 Total: -106.41 kcal Atomic # 8 Polarization: -42.60 SS G_CDS: -1.45 Total: -44.05 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -78.13 2.44 -75.70 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450862271.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.433 kcal (2) G-P(sol) polarization free energy of solvation -78.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds