Wall clock time and date at job start Tue Mar 31 2020 21:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.47006 * 2 1 4 4 C 1.46501 * 119.99575 * 90.00108 * 3 2 1 5 5 C 1.50689 * 109.47333 * 269.99789 * 4 3 2 6 6 H 1.08005 * 120.00351 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00046 * 180.02562 * 5 4 3 8 8 N 1.31522 * 120.00053 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99932 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47167 * 90.00058 * 9 7 5 11 11 H 1.48504 * 109.46849 * 210.00137 * 9 7 5 12 12 H 1.48496 * 109.47066 * 329.99591 * 9 7 5 13 13 C 1.34777 * 119.99926 * 270.00147 * 3 2 1 14 14 O 1.21276 * 119.99610 * 180.02562 * 13 3 2 15 15 C 1.50696 * 120.00201 * 0.02562 * 13 3 2 16 16 N 1.46902 * 109.47056 * 179.97438 * 15 13 3 17 17 C 1.46897 * 110.99790 * 179.97438 * 16 15 13 18 18 H 1.09009 * 113.55385 * 337.26364 * 17 16 15 19 19 C 1.50609 * 114.58722 * 202.94616 * 17 16 15 20 20 H 1.09011 * 114.39723 * 174.54543 * 19 17 16 21 21 C 1.52115 * 127.06257 * 21.08805 * 19 17 16 22 22 C 1.55956 * 101.93891 * 240.71413 * 21 19 17 23 23 O 1.46146 * 105.30176 * 6.36474 * 22 21 19 24 24 C 1.40192 * 104.70366 * 29.68029 * 23 22 21 25 25 H 1.09002 * 108.79849 * 66.61774 * 24 23 22 26 26 C 1.48342 * 136.75185 * 222.89522 * 24 23 22 27 27 C 1.53378 * 118.60050 * 246.99952 * 26 24 23 28 28 C 1.55107 * 103.93482 * 115.30091 * 27 26 24 29 29 C 1.54969 * 102.87355 * 37.15399 * 28 27 26 30 30 C 1.53013 * 118.71696 * 20.72573 * 26 24 23 31 31 H 1.09000 * 109.47906 * 59.99569 * 1 2 3 32 32 H 1.09001 * 109.47211 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47213 * 299.99664 * 1 2 3 34 34 H 1.09001 * 109.46798 * 239.99996 * 2 1 3 35 35 H 1.08994 * 109.47102 * 120.00181 * 2 1 3 36 36 H 1.09004 * 109.46403 * 149.99797 * 4 3 2 37 37 H 1.09004 * 109.47332 * 30.00186 * 4 3 2 38 38 H 0.97000 * 120.00120 * 180.02562 * 8 7 5 39 39 H 1.09007 * 109.47008 * 299.99767 * 15 13 3 40 40 H 1.08997 * 109.47462 * 59.99869 * 15 13 3 41 41 H 1.00893 * 110.99820 * 56.04521 * 16 15 13 42 42 H 1.08997 * 110.93460 * 358.87232 * 21 19 17 43 43 H 1.08997 * 110.93695 * 122.51770 * 21 19 17 44 44 H 1.08996 * 110.27774 * 125.31918 * 22 21 19 45 45 H 1.08992 * 110.27720 * 247.31334 * 22 21 19 46 46 H 1.09001 * 110.53169 * 233.90962 * 27 26 24 47 47 H 1.08996 * 110.53856 * 356.68505 * 27 26 24 48 48 H 1.08999 * 110.73364 * 278.80576 * 28 27 26 49 49 H 1.09006 * 110.72764 * 155.49870 * 28 27 26 50 50 H 1.09003 * 110.47422 * 203.85548 * 29 28 27 51 51 H 1.08998 * 110.48007 * 81.24788 * 29 28 27 52 52 H 1.08994 * 110.11106 * 340.66873 * 30 26 24 53 53 H 1.09002 * 110.10813 * 102.31077 * 30 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 1.2688 5 6 1.0067 2.7821 1.7039 6 1 0.1156 2.7247 1.0963 7 6 0.9953 3.5055 2.8776 8 7 -0.1008 4.1251 3.2576 9 14 2.5366 3.6055 3.9281 10 1 3.3484 4.7751 3.5060 11 1 2.1541 3.7574 5.3550 12 1 3.3326 2.3634 3.7587 13 6 2.2429 2.0166 -1.1672 14 8 2.6476 3.1598 -1.1671 15 6 1.9912 1.3064 -2.4723 16 7 2.3089 2.2067 -3.5888 17 6 2.0755 1.5464 -4.8801 18 1 2.1007 0.4581 -4.8238 19 6 2.8484 2.1324 -6.0323 20 1 2.7459 1.5837 -6.9687 21 6 4.1122 2.9754 -5.9542 22 6 3.6515 4.3096 -6.6174 23 8 2.2158 4.1534 -6.8413 24 6 1.7875 3.2954 -5.8187 25 1 1.8951 3.8073 -4.8625 26 6 0.8836 2.1253 -5.6978 27 6 -0.4081 2.2764 -4.8846 28 6 -1.5344 2.0950 -5.9355 29 6 -0.9617 0.9992 -6.8697 30 6 0.5464 1.3235 -6.9566 31 1 -0.3635 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 3.0644 2.7984 1.1384 37 1 2.5506 1.3451 2.0284 38 1 -0.1088 4.6343 4.0832 39 1 2.6211 0.4187 -2.5303 40 1 0.9431 1.0126 -2.5299 41 1 3.2571 2.5448 -3.5221 42 1 4.4086 3.1376 -4.9179 43 1 4.9219 2.5169 -6.5218 44 1 3.8404 5.1490 -5.9482 45 1 4.1690 4.4588 -7.5649 46 1 -0.4708 1.5026 -4.1195 47 1 -0.4622 3.2670 -4.4333 48 1 -1.7024 3.0213 -6.4848 49 1 -2.4544 1.7546 -5.4601 50 1 -1.4223 1.0600 -7.8558 51 1 -1.1149 0.0107 -6.4368 52 1 0.7511 1.9190 -7.8463 53 1 1.1272 0.4014 -6.9803 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000450862272.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:42 Heat of formation + Delta-G solvation = -9.969680 kcal Electronic energy + Delta-G solvation = -31204.466638 eV Core-core repulsion = 27271.528113 eV Total energy + Delta-G solvation = -3932.938525 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.23126 -40.69884 -38.60817 -37.09676 -36.48020 -34.82384 -33.94016 -31.87491 -31.75569 -30.05022 -29.68118 -27.60391 -26.77820 -24.82240 -24.16626 -24.08718 -23.62341 -21.89143 -20.44642 -20.03280 -19.46758 -19.06230 -17.95249 -17.71619 -17.14213 -16.99394 -16.92221 -16.30090 -16.19888 -15.87790 -15.53187 -15.19578 -14.91021 -14.71694 -14.63149 -14.31240 -14.17920 -13.99944 -13.87876 -13.73833 -13.47196 -13.21296 -12.99126 -12.98978 -12.58876 -12.56928 -12.38486 -12.29859 -12.00738 -11.99119 -11.89445 -11.87707 -11.75756 -11.61927 -11.58555 -11.39349 -11.32716 -10.80595 -10.73188 -10.59510 -9.98585 -9.40182 -9.22804 -8.31014 -6.34600 1.31770 1.36199 1.43915 1.81383 2.14654 2.24683 2.31921 2.91064 3.03199 3.25755 3.36842 3.68998 3.72663 3.84933 3.91469 4.04801 4.11268 4.21344 4.27397 4.32987 4.36704 4.40237 4.42882 4.50278 4.55685 4.61829 4.63546 4.66107 4.73586 4.79895 4.82514 4.86374 4.93292 4.94985 4.97665 4.97973 5.05020 5.07545 5.11948 5.18851 5.27685 5.29105 5.36250 5.43239 5.48274 5.52055 5.53808 5.69321 5.93512 6.07651 6.25591 6.28380 6.67480 6.76381 7.25319 7.47722 8.85868 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014150 B = 0.003173 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.322193 B = 8822.733362 C = 9548.465942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.105 3.895 3 N -0.601 5.601 4 C 0.224 3.776 5 C -0.526 4.526 6 H 0.031 0.969 7 C 0.008 3.992 8 N -0.948 5.948 9 Si 0.946 3.054 10 H -0.280 1.280 11 H -0.277 1.277 12 H -0.236 1.236 13 C 0.496 3.504 14 O -0.585 6.585 15 C 0.059 3.941 16 N -0.668 5.668 17 C 0.094 3.906 18 H 0.101 0.899 19 C -0.179 4.179 20 H 0.132 0.868 21 C -0.136 4.136 22 C 0.047 3.953 23 O -0.392 6.392 24 C 0.028 3.972 25 H 0.079 0.921 26 C -0.035 4.035 27 C -0.106 4.106 28 C -0.128 4.128 29 C -0.117 4.117 30 C -0.095 4.095 31 H 0.045 0.955 32 H 0.093 0.907 33 H 0.029 0.971 34 H 0.111 0.889 35 H 0.085 0.915 36 H 0.016 0.984 37 H 0.049 0.951 38 H 0.266 0.734 39 H 0.096 0.904 40 H 0.110 0.890 41 H 0.350 0.650 42 H 0.066 0.934 43 H 0.098 0.902 44 H 0.054 0.946 45 H 0.108 0.892 46 H 0.072 0.928 47 H 0.037 0.963 48 H 0.054 0.946 49 H 0.069 0.931 50 H 0.074 0.926 51 H 0.080 0.920 52 H 0.067 0.933 53 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.369 -14.666 -22.261 27.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.017 4.017 3 N -0.333 5.333 4 C 0.102 3.898 5 C -0.564 4.564 6 H 0.050 0.950 7 C -0.190 4.190 8 N -0.589 5.589 9 Si 0.769 3.231 10 H -0.205 1.205 11 H -0.203 1.203 12 H -0.159 1.159 13 C 0.285 3.715 14 O -0.464 6.464 15 C -0.072 4.072 16 N -0.302 5.302 17 C -0.016 4.016 18 H 0.119 0.881 19 C -0.198 4.198 20 H 0.150 0.850 21 C -0.174 4.174 22 C -0.029 4.029 23 O -0.312 6.312 24 C -0.030 4.030 25 H 0.096 0.904 26 C -0.036 4.036 27 C -0.143 4.143 28 C -0.166 4.166 29 C -0.154 4.154 30 C -0.133 4.133 31 H 0.065 0.935 32 H 0.111 0.889 33 H 0.049 0.951 34 H 0.129 0.871 35 H 0.104 0.896 36 H 0.034 0.966 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.113 0.887 40 H 0.128 0.872 41 H 0.172 0.828 42 H 0.085 0.915 43 H 0.117 0.883 44 H 0.073 0.927 45 H 0.126 0.874 46 H 0.091 0.909 47 H 0.056 0.944 48 H 0.073 0.927 49 H 0.088 0.912 50 H 0.092 0.908 51 H 0.098 0.902 52 H 0.086 0.914 53 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.812 -13.578 -22.244 26.700 hybrid contribution 0.794 0.761 1.292 1.697 sum 6.606 -12.817 -20.951 25.434 Atomic orbital electron populations 1.22158 0.96358 1.02600 1.01177 1.21794 0.94497 0.80791 1.04577 1.48069 1.64395 1.15118 1.05707 1.19311 0.94993 0.92847 0.82664 1.21581 0.97648 1.30838 1.06369 0.95023 1.25850 0.99544 0.94430 0.99127 1.70062 1.29892 1.34419 1.24485 0.85747 0.79486 0.80114 0.77763 1.20547 1.20271 1.15947 1.21245 0.77264 0.86465 0.86526 1.90645 1.48072 1.19838 1.87889 1.21904 1.04179 0.94376 0.86785 1.59920 1.32245 1.37896 1.00156 1.22224 0.95812 0.97047 0.86485 0.88103 1.24608 0.95077 0.99863 1.00206 0.84995 1.22348 0.98103 0.95323 1.01606 1.24291 0.79497 0.97482 1.01581 1.88305 1.23217 1.68698 1.50972 1.23932 1.00146 0.88387 0.90583 0.90394 1.21988 0.93258 0.92025 0.96326 1.22111 0.94008 1.00759 0.97458 1.22570 0.97897 0.99110 0.97015 1.22398 0.94545 0.98751 0.99732 1.21915 0.97017 0.99533 0.94814 0.93546 0.88856 0.95149 0.87068 0.89612 0.96632 0.93348 0.92498 0.88663 0.87182 0.82770 0.91504 0.88307 0.92722 0.87437 0.90906 0.94447 0.92740 0.91199 0.90777 0.90181 0.91431 0.88908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.71 10.24 71.98 0.74 -3.97 16 2 C 0.11 2.81 5.98 86.38 0.52 3.33 16 3 N -0.60 -23.21 2.46 -826.17 -2.03 -25.24 16 4 C 0.22 10.77 4.27 85.63 0.37 11.14 16 5 C -0.53 -30.85 9.48 25.60 0.24 -30.61 16 6 H 0.03 2.08 7.67 -2.91 -0.02 2.06 16 7 C 0.01 0.47 5.47 84.65 0.46 0.93 16 8 N -0.95 -60.74 13.96 21.45 0.30 -60.44 16 9 Si 0.95 44.86 27.47 68.60 1.88 46.74 16 10 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 12 H -0.24 -9.95 6.54 99.48 0.65 -9.30 16 13 C 0.50 19.18 7.71 87.66 0.68 19.85 16 14 O -0.58 -28.90 15.78 -3.02 -0.05 -28.95 16 15 C 0.06 1.49 4.57 85.56 0.39 1.88 16 16 N -0.67 -17.09 4.23 -533.73 -2.26 -19.35 16 17 C 0.09 1.75 3.77 37.82 0.14 1.89 16 18 H 0.10 1.36 7.89 -2.38 -0.02 1.34 16 19 C -0.18 -3.17 4.22 -18.53 -0.08 -3.25 16 20 H 0.13 1.94 6.21 -2.38 -0.01 1.93 16 21 C -0.14 -2.34 6.74 31.33 0.21 -2.13 16 22 C 0.05 0.96 7.81 73.01 0.57 1.53 16 23 O -0.39 -10.69 11.40 -142.41 -1.62 -12.32 16 24 C 0.03 0.70 4.36 23.98 0.10 0.81 16 25 H 0.08 2.52 6.48 -2.39 -0.02 2.51 16 26 C -0.03 -0.72 1.29 -61.37 -0.08 -0.80 16 27 C -0.11 -2.53 6.03 31.44 0.19 -2.34 16 28 C -0.13 -2.52 6.92 31.99 0.22 -2.30 16 29 C -0.12 -1.69 6.85 31.78 0.22 -1.47 16 30 C -0.10 -1.45 4.78 31.11 0.15 -1.30 16 31 H 0.05 1.34 7.22 -2.39 -0.02 1.32 16 32 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.03 1.16 7.26 -2.39 -0.02 1.14 16 34 H 0.11 1.92 6.44 -2.39 -0.02 1.91 16 35 H 0.09 2.12 7.89 -2.39 -0.02 2.10 16 36 H 0.02 0.81 6.85 -2.38 -0.02 0.79 16 37 H 0.05 2.13 6.95 -2.38 -0.02 2.11 16 38 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 39 H 0.10 1.64 7.40 -2.38 -0.02 1.63 16 40 H 0.11 2.60 6.37 -2.39 -0.02 2.58 16 41 H 0.35 9.44 6.59 -89.70 -0.59 8.85 16 42 H 0.07 1.29 6.54 -2.39 -0.02 1.28 16 43 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.11 1.66 8.14 -2.39 -0.02 1.65 16 46 H 0.07 1.67 7.25 -2.39 -0.02 1.65 16 47 H 0.04 1.14 8.03 -2.39 -0.02 1.12 16 48 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 49 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 50 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 51 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 52 H 0.07 1.14 8.04 -2.39 -0.02 1.12 16 53 H 0.09 0.98 7.38 -2.39 -0.02 0.97 16 Total: -1.00 -80.15 398.40 1.52 -78.63 By element: Atomic # 1 Polarization: 27.46 SS G_CDS: 0.25 Total: 27.72 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: 5.04 Total: -6.80 kcal Atomic # 7 Polarization: -101.05 SS G_CDS: -3.99 Total: -105.03 kcal Atomic # 8 Polarization: -39.59 SS G_CDS: -1.67 Total: -41.26 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.88 Total: 46.74 kcal Total: -80.15 1.52 -78.63 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450862272.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.663 kcal (2) G-P(sol) polarization free energy of solvation -80.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds