Wall clock time and date at job start Tue Mar 31 2020 19:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47277 * 2 1 4 4 C 1.52999 * 109.47106 * 119.99987 * 2 1 3 5 5 C 1.50694 * 109.47386 * 184.99807 * 4 2 1 6 6 O 1.21284 * 119.99886 * 0.02562 * 5 4 2 7 7 N 1.34782 * 120.00511 * 179.97438 * 5 4 2 8 8 C 1.46920 * 120.62616 * 359.72241 * 7 5 4 9 9 C 1.52762 * 109.00979 * 233.58189 * 8 7 5 10 10 C 1.53042 * 109.37972 * 305.59067 * 9 8 7 11 11 C 1.50707 * 109.44771 * 181.25139 * 10 9 8 12 12 H 1.07997 * 119.99787 * 239.94063 * 11 10 9 13 13 C 1.37876 * 119.99737 * 59.93887 * 11 10 9 14 14 N 1.31516 * 120.00155 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99719 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.47185 * 59.99937 * 15 13 11 17 17 H 1.48500 * 109.47033 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47459 * 299.99640 * 15 13 11 19 19 C 1.53039 * 109.53896 * 61.23982 * 10 9 8 20 20 C 1.46924 * 120.63223 * 180.02562 * 7 5 4 21 21 N 1.46498 * 109.47192 * 239.99636 * 2 1 3 22 22 C 1.34783 * 119.99723 * 84.99856 * 21 2 1 23 23 O 1.21281 * 120.00146 * 0.02562 * 22 21 2 24 24 C 1.50697 * 119.99698 * 180.02562 * 22 21 2 25 25 C 1.54961 * 110.92464 * 66.54433 * 24 22 21 26 26 C 1.54270 * 104.16191 * 156.29299 * 25 24 22 27 27 C 1.53869 * 106.63967 * 336.44607 * 26 25 24 28 28 C 1.54268 * 106.60115 * 359.97438 * 27 26 25 29 29 H 1.09003 * 109.46917 * 59.99968 * 1 2 3 30 30 H 1.08993 * 109.47596 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46566 * 300.00206 * 1 2 3 32 32 H 1.09005 * 109.47107 * 305.00028 * 4 2 1 33 33 H 1.09001 * 109.47427 * 64.99520 * 4 2 1 34 34 H 1.09007 * 109.58946 * 353.41694 * 8 7 5 35 35 H 1.09001 * 109.58707 * 113.84151 * 8 7 5 36 36 H 1.08999 * 109.57043 * 185.55342 * 9 8 7 37 37 H 1.08998 * 109.38204 * 65.51197 * 9 8 7 38 38 H 1.09003 * 109.45788 * 301.21369 * 10 9 8 39 39 H 0.97002 * 120.00000 * 180.02562 * 14 13 11 40 40 H 1.08999 * 109.49547 * 178.68525 * 19 10 9 41 41 H 1.08996 * 109.52707 * 58.60008 * 19 10 9 42 42 H 1.09005 * 109.58506 * 246.15745 * 20 7 5 43 43 H 1.08998 * 109.58816 * 6.43803 * 20 7 5 44 44 H 0.97002 * 120.00551 * 265.00857 * 21 2 1 45 45 H 1.09001 * 110.67717 * 303.23484 * 24 22 21 46 46 H 1.08997 * 110.47708 * 37.63897 * 25 24 22 47 47 H 1.09002 * 110.53308 * 274.97289 * 25 24 22 48 48 H 1.09002 * 110.03399 * 217.13605 * 26 25 24 49 49 H 1.08995 * 110.02943 * 95.75505 * 26 25 24 50 50 H 1.08999 * 110.03405 * 119.26051 * 27 26 25 51 51 H 1.09001 * 110.03705 * 240.64196 * 27 26 25 52 52 H 1.08997 * 110.48788 * 142.28685 * 28 27 26 53 53 H 1.09000 * 110.48806 * 264.79985 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.6150 1.3127 6 8 4.1450 -0.0205 0.4445 7 7 4.2149 -1.1797 2.3349 8 6 3.4977 -1.8970 3.3978 9 6 3.9096 -1.3217 4.7517 10 6 5.4339 -1.3670 4.8802 11 6 5.8401 -0.8281 6.2278 12 1 6.4844 0.0362 6.2918 13 6 5.3890 -1.4387 7.3788 14 7 4.6040 -2.4909 7.3007 15 14 5.8919 -0.7704 9.0490 16 1 5.4258 0.6335 9.1813 17 1 5.2782 -1.5980 10.1185 18 1 7.3708 -0.8149 9.1753 19 6 6.0661 -0.5136 3.7783 20 6 5.6790 -1.0841 2.4108 21 7 2.0184 -0.6907 -1.1961 22 6 2.1470 -0.0183 -2.3571 23 8 1.8590 1.1585 -2.4115 24 6 2.6488 -0.7289 -3.5877 25 6 1.6330 -1.7988 -4.0618 26 6 1.9470 -1.9791 -5.5614 27 6 2.6337 -0.6831 -6.0267 28 6 2.7129 0.2408 -4.7938 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6054 -0.2617 2.1370 33 1 1.7516 -1.7715 1.2057 34 1 2.4233 -1.7734 3.2614 35 1 3.7534 -2.9559 3.3608 36 1 3.4594 -1.9106 5.5508 37 1 3.5689 -0.2889 4.8246 38 1 5.7760 -2.3973 4.7830 39 1 4.2864 -2.9202 8.1105 40 1 7.1508 -0.5274 3.8846 41 1 5.7056 0.5118 3.8596 42 1 6.1166 -2.0753 2.2915 43 1 6.0437 -0.4264 1.6218 44 1 2.2490 -1.6319 -1.1526 45 1 3.6241 -1.1788 -3.4015 46 1 0.6121 -1.4420 -3.9260 47 1 1.7854 -2.7351 -3.5249 48 1 1.0241 -2.1339 -6.1202 49 1 2.6160 -2.8278 -5.7034 50 1 3.6363 -0.9027 -6.3937 51 1 2.0445 -0.2093 -6.8118 52 1 3.6530 0.7925 -4.7902 53 1 1.8678 0.9291 -4.7778 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000542908581.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:16 Heat of formation + Delta-G solvation = -123.744793 kcal Electronic energy + Delta-G solvation = -30025.704046 eV Core-core repulsion = 26087.831862 eV Total energy + Delta-G solvation = -3937.872184 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.46310 -40.76407 -38.65444 -38.05766 -36.60056 -35.31144 -33.35641 -32.59655 -31.72684 -29.90414 -29.54386 -29.13670 -27.72410 -24.79373 -24.08709 -23.62982 -22.16425 -21.34639 -21.09025 -20.77233 -19.72951 -18.59000 -18.34373 -17.87009 -17.34642 -16.79073 -16.68470 -16.45700 -16.15252 -15.65055 -15.51046 -15.00368 -14.85440 -14.59203 -14.44844 -14.26239 -14.23491 -13.97180 -13.83533 -13.53222 -13.29450 -13.09318 -12.97088 -12.94604 -12.83278 -12.78060 -12.47339 -12.14023 -12.11952 -12.04531 -11.99490 -11.97987 -11.88012 -11.70607 -11.46452 -11.25537 -11.01086 -10.94171 -10.69715 -10.63886 -10.38157 -10.00338 -9.50201 -8.08160 -6.20725 1.42000 1.43124 1.49992 1.68116 1.73969 2.12664 2.30270 2.43809 3.18333 3.51823 3.55012 3.64520 3.68863 3.85567 4.12836 4.19686 4.26745 4.29344 4.34662 4.44642 4.48179 4.52233 4.52542 4.58297 4.59905 4.61854 4.62488 4.68532 4.77923 4.80113 4.83652 4.88738 4.94083 5.00330 5.08280 5.10576 5.18760 5.19913 5.26263 5.29164 5.31658 5.36668 5.44416 5.49273 5.57389 5.61015 5.66578 5.99797 6.15706 6.40318 6.55754 6.64757 6.87876 7.24692 7.35948 7.46616 8.94827 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.026028 B = 0.002166 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.513150 B =12923.846468 C =13241.710563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.158 3.842 3 H 0.053 0.947 4 C -0.141 4.141 5 C 0.505 3.495 6 O -0.583 6.583 7 N -0.604 5.604 8 C 0.114 3.886 9 C -0.118 4.118 10 C 0.046 3.954 11 C -0.537 4.537 12 H 0.043 0.957 13 C 0.020 3.980 14 N -0.908 5.908 15 Si 0.945 3.055 16 H -0.277 1.277 17 H -0.281 1.281 18 H -0.276 1.276 19 C -0.114 4.114 20 C 0.119 3.881 21 N -0.704 5.704 22 C 0.521 3.479 23 O -0.591 6.591 24 C -0.115 4.115 25 C -0.105 4.105 26 C -0.120 4.120 27 C -0.122 4.122 28 C -0.108 4.108 29 H 0.044 0.956 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.125 0.875 33 H 0.134 0.866 34 H 0.108 0.892 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.026 0.974 38 H 0.004 0.996 39 H 0.262 0.738 40 H 0.059 0.941 41 H 0.037 0.963 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.408 0.592 45 H 0.108 0.892 46 H 0.063 0.937 47 H 0.091 0.909 48 H 0.075 0.925 49 H 0.079 0.921 50 H 0.072 0.928 51 H 0.070 0.930 52 H 0.056 0.944 53 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.047 -4.462 -20.832 23.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.053 3.947 3 H 0.071 0.929 4 C -0.181 4.181 5 C 0.295 3.705 6 O -0.463 6.463 7 N -0.337 5.337 8 C -0.008 4.008 9 C -0.156 4.156 10 C 0.027 3.973 11 C -0.575 4.575 12 H 0.061 0.939 13 C -0.179 4.179 14 N -0.548 5.548 15 Si 0.772 3.228 16 H -0.202 1.202 17 H -0.207 1.207 18 H -0.202 1.202 19 C -0.153 4.153 20 C -0.004 4.004 21 N -0.354 5.354 22 C 0.308 3.692 23 O -0.472 6.472 24 C -0.136 4.136 25 C -0.143 4.143 26 C -0.158 4.158 27 C -0.160 4.160 28 C -0.147 4.147 29 H 0.063 0.937 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.143 0.857 33 H 0.152 0.848 34 H 0.126 0.874 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.045 0.955 38 H 0.023 0.977 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.056 0.944 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.244 0.756 45 H 0.126 0.874 46 H 0.082 0.918 47 H 0.110 0.890 48 H 0.093 0.907 49 H 0.097 0.903 50 H 0.091 0.909 51 H 0.088 0.912 52 H 0.075 0.925 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.030 -3.468 -21.177 23.687 hybrid contribution 0.894 0.370 1.553 1.830 sum -9.136 -3.098 -19.623 21.867 Atomic orbital electron populations 1.22095 0.92786 1.03656 1.02515 1.20602 0.94724 0.96144 0.83223 0.92911 1.22117 0.90185 1.05585 1.00188 1.21208 0.91343 0.77489 0.80501 1.90685 1.71272 1.44140 1.40229 1.48314 1.07341 1.54082 1.23915 1.21862 0.97205 0.95658 0.86027 1.21725 0.98777 0.98995 0.96151 1.18602 0.92834 0.93966 0.91855 1.21514 1.29896 1.13581 0.92540 0.93863 1.25580 0.95169 0.95223 1.01937 1.69916 1.34537 1.21236 1.29091 0.85812 0.78473 0.78360 0.80163 1.20214 1.20653 1.20179 1.21844 1.00016 0.98821 0.94584 1.21480 0.80437 1.01065 0.97373 1.45837 1.66522 1.14081 1.08956 1.20950 0.76159 0.86628 0.85414 1.90641 1.52505 1.18109 1.85932 1.22367 1.01545 0.97878 0.91787 1.22340 0.97463 0.97539 0.96955 1.22131 1.01282 0.97744 0.94635 1.22149 1.01548 0.95534 0.96728 1.22203 1.01701 0.97303 0.93448 0.93709 0.89862 0.90202 0.85693 0.84841 0.87416 0.91265 0.90026 0.95526 0.97744 0.92845 0.92280 0.94422 0.91211 0.90768 0.75575 0.87447 0.91797 0.89031 0.90668 0.90258 0.90912 0.91152 0.92478 0.92388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.48 71.98 0.68 -1.94 16 2 C 0.16 3.58 2.14 44.99 0.10 3.68 16 3 H 0.05 1.66 7.39 -2.39 -0.02 1.65 16 4 C -0.14 -2.79 3.59 29.85 0.11 -2.69 16 5 C 0.50 15.05 7.56 87.65 0.66 15.71 16 6 O -0.58 -21.73 14.77 -3.04 -0.04 -21.77 16 7 N -0.60 -19.08 2.98 -819.82 -2.44 -21.52 16 8 C 0.11 3.45 6.31 86.22 0.54 4.00 16 9 C -0.12 -4.89 5.14 30.53 0.16 -4.73 16 10 C 0.05 2.15 2.07 -11.51 -0.02 2.12 16 11 C -0.54 -28.59 8.56 25.60 0.22 -28.37 16 12 H 0.04 2.33 7.74 -2.91 -0.02 2.30 16 13 C 0.02 1.07 5.30 84.65 0.45 1.51 16 14 N -0.91 -48.69 11.30 21.45 0.24 -48.44 16 15 Si 0.95 42.24 29.54 68.60 2.03 44.27 16 16 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 17 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 18 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 19 C -0.11 -4.65 5.30 30.66 0.16 -4.49 16 20 C 0.12 4.14 6.43 86.35 0.56 4.70 16 21 N -0.70 -15.23 4.22 -442.53 -1.87 -17.09 16 22 C 0.52 13.65 7.11 87.66 0.62 14.27 16 23 O -0.59 -20.89 15.39 -3.03 -0.05 -20.93 16 24 C -0.11 -2.18 3.28 -10.22 -0.03 -2.21 16 25 C -0.11 -1.35 6.28 31.70 0.20 -1.15 16 26 C -0.12 -1.30 6.80 31.32 0.21 -1.08 16 27 C -0.12 -1.65 6.80 31.32 0.21 -1.43 16 28 C -0.11 -2.17 5.90 31.67 0.19 -1.98 16 29 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.08 1.18 8.14 -2.38 -0.02 1.17 16 32 H 0.13 2.17 7.68 -2.38 -0.02 2.16 16 33 H 0.13 1.71 7.95 -2.39 -0.02 1.69 16 34 H 0.11 2.40 5.94 -2.38 -0.01 2.39 16 35 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.08 3.81 6.03 -2.39 -0.01 3.79 16 37 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 39 H 0.26 13.45 8.31 -92.71 -0.77 12.68 16 40 H 0.06 2.35 8.14 -2.39 -0.02 2.34 16 41 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 43 H 0.07 2.65 7.00 -2.39 -0.02 2.63 16 44 H 0.41 6.60 8.60 -92.71 -0.80 5.81 16 45 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.06 0.91 8.05 -2.39 -0.02 0.89 16 47 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 49 H 0.08 0.67 8.14 -2.39 -0.02 0.66 16 50 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 51 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 52 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 53 H 0.06 1.39 7.45 -2.39 -0.02 1.37 16 Total: -1.00 -70.20 409.98 2.96 -67.23 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: 0.08 Total: 22.34 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: 5.01 Total: -4.08 kcal Atomic # 7 Polarization: -82.99 SS G_CDS: -4.07 Total: -87.05 kcal Atomic # 8 Polarization: -42.62 SS G_CDS: -0.09 Total: -42.71 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -70.20 2.96 -67.23 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542908581.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.511 kcal (2) G-P(sol) polarization free energy of solvation -70.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds