Wall clock time and date at job start Tue Mar 31 2020 19:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47046 * 2 1 4 4 N 1.46900 * 109.47370 * 239.99471 * 2 1 3 5 5 C 1.46898 * 110.99589 * 84.99775 * 4 2 1 6 6 C 1.53001 * 109.46893 * 180.02562 * 5 4 2 7 7 H 1.08999 * 109.47164 * 60.00204 * 6 5 4 8 8 O 1.42903 * 109.47171 * 299.99938 * 6 5 4 9 9 C 1.53003 * 109.47376 * 180.02562 * 6 5 4 10 10 N 1.46900 * 109.47407 * 184.99739 * 9 6 5 11 11 C 1.46906 * 110.99546 * 66.04524 * 10 9 6 12 12 C 1.46894 * 111.00089 * 189.99447 * 10 9 6 13 13 C 1.50701 * 109.47049 * 170.00217 * 12 10 9 14 14 H 1.08000 * 119.99881 * 0.02562 * 13 12 10 15 15 C 1.37881 * 120.00015 * 180.02562 * 13 12 10 16 16 N 1.31516 * 120.00075 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 119.99779 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47087 * 90.00244 * 17 15 13 19 19 H 1.48505 * 109.46761 * 209.99680 * 17 15 13 20 20 H 1.48495 * 109.47549 * 329.99797 * 17 15 13 21 21 C 1.53005 * 109.46989 * 119.99786 * 2 1 3 22 22 H 1.08997 * 109.47112 * 175.00226 * 21 2 1 23 23 O 1.42894 * 109.47039 * 54.99865 * 21 2 1 24 24 C 1.53005 * 109.47020 * 294.99855 * 21 2 1 25 25 C 1.50689 * 109.47059 * 184.99837 * 24 21 2 26 26 C 1.38234 * 120.00272 * 269.72776 * 25 24 21 27 27 C 1.38239 * 119.99998 * 179.76804 * 26 25 24 28 28 C 1.38240 * 120.00043 * 0.50826 * 27 26 25 29 29 C 1.38235 * 119.99676 * 359.74368 * 28 27 26 30 30 C 1.38235 * 120.00251 * 0.02562 * 29 28 27 31 31 H 1.09000 * 109.47144 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47337 * 300.00231 * 1 2 3 33 33 H 1.09004 * 109.47057 * 60.00289 * 1 2 3 34 34 H 1.00893 * 110.99943 * 208.95431 * 4 2 1 35 35 H 1.08999 * 109.47049 * 60.00398 * 5 4 2 36 36 H 1.08997 * 109.47646 * 300.00448 * 5 4 2 37 37 H 0.96700 * 114.00311 * 300.00378 * 8 6 5 38 38 H 1.09005 * 109.46682 * 304.99749 * 9 6 5 39 39 H 1.08999 * 109.47221 * 64.99915 * 9 6 5 40 40 H 1.08991 * 109.47276 * 60.00231 * 11 10 9 41 41 H 1.09005 * 109.46723 * 179.97438 * 11 10 9 42 42 H 1.09001 * 109.47097 * 299.99420 * 11 10 9 43 43 H 1.08995 * 109.47552 * 290.00132 * 12 10 9 44 44 H 1.09000 * 109.46814 * 50.00455 * 12 10 9 45 45 H 0.96996 * 120.00172 * 180.02562 * 16 15 13 46 46 H 0.96702 * 114.00513 * 299.99634 * 23 21 2 47 47 H 1.09001 * 109.46938 * 305.00601 * 24 21 2 48 48 H 1.09005 * 109.46877 * 64.99794 * 24 21 2 49 49 H 1.07996 * 119.99856 * 359.97438 * 26 25 24 50 50 H 1.08004 * 119.99855 * 180.22888 * 27 26 25 51 51 H 1.08002 * 120.00026 * 179.72873 * 28 27 26 52 52 H 1.08001 * 119.99453 * 179.97438 * 29 28 27 53 53 H 1.07996 * 119.99705 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6926 -1.1993 5 6 2.0825 0.2224 -2.3468 6 6 2.5951 -0.5334 -3.5744 7 1 1.9184 -1.3568 -3.8028 8 8 3.9000 -1.0499 -3.3051 9 6 2.6611 0.4197 -4.7694 10 7 3.0381 -0.3311 -5.9744 11 6 1.9882 -1.2882 -6.3483 12 6 3.3422 0.5780 -7.0875 13 6 3.9562 -0.2031 -8.2206 14 1 4.1052 -1.2684 -8.1237 15 6 4.3278 0.4422 -9.3810 16 7 4.8640 -0.2394 -10.3697 17 14 4.0707 2.2849 -9.5483 18 1 5.2770 2.9994 -9.0588 19 1 3.8391 2.6248 -10.9752 20 1 2.8919 2.6953 -8.7440 21 6 2.0400 -0.7212 1.2493 22 1 3.1263 -0.7994 1.2057 23 8 1.4702 -2.0303 1.3095 24 6 1.6352 0.0691 2.4954 25 6 2.2408 -0.5736 3.7164 26 6 1.5438 -1.5521 4.4002 27 6 2.1015 -2.1450 5.5175 28 6 3.3517 -1.7519 5.9573 29 6 4.0465 -0.7696 5.2766 30 6 3.4909 -0.1801 4.1565 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 2.9173 -1.1205 -1.0286 35 1 2.7588 1.0460 -2.1182 36 1 1.0871 0.6162 -2.5525 37 1 4.5557 -0.3714 -3.0934 38 1 1.6854 0.8819 -4.9198 39 1 3.4039 1.1937 -4.5764 40 1 1.0610 -0.7511 -6.5471 41 1 2.2928 -1.8303 -7.2436 42 1 1.8319 -1.9933 -5.5318 43 1 2.4231 1.0533 -7.4300 44 1 4.0430 1.3421 -6.7513 45 1 5.1258 0.2147 -11.1859 46 1 0.5040 -2.0373 1.3505 47 1 1.9948 1.0943 2.4080 48 1 0.5490 0.0716 2.5870 49 1 0.5651 -1.8558 4.0594 50 1 1.5585 -2.9122 6.0495 51 1 3.7855 -2.2120 6.8328 52 1 5.0231 -0.4622 5.6205 53 1 4.0335 0.5875 3.6250 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580564363.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:31 Heat of formation + Delta-G solvation = -100.718433 kcal Electronic energy + Delta-G solvation = -28715.631701 eV Core-core repulsion = 24778.758015 eV Total energy + Delta-G solvation = -3936.873686 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.57601 -39.73158 -38.93753 -37.31188 -35.74910 -34.60746 -33.76928 -32.14217 -31.71580 -30.66092 -29.29004 -28.77810 -27.39856 -25.68647 -24.28144 -23.40735 -22.49025 -21.99896 -21.76323 -21.16618 -19.03552 -18.18558 -17.56005 -17.28799 -17.00585 -16.81106 -16.55026 -16.20154 -16.07328 -15.86888 -15.81272 -15.61258 -15.43190 -14.74395 -14.57352 -14.40595 -14.21217 -13.97829 -13.71750 -13.58068 -13.46953 -13.33610 -13.14488 -13.02275 -12.87087 -12.52463 -12.43727 -12.40076 -12.29877 -12.23679 -11.98633 -11.91627 -11.77545 -11.69175 -11.61633 -11.50493 -10.98180 -10.78820 -10.63962 -9.76666 -9.52124 -9.29783 -8.96849 -8.28266 -6.32232 0.49224 0.55623 1.33831 1.35996 1.46534 2.34016 2.80215 2.97406 3.04635 3.34193 3.57913 3.68587 3.71900 3.94746 3.99245 4.05054 4.09272 4.16268 4.21405 4.27038 4.31843 4.36264 4.39799 4.44485 4.49201 4.55304 4.64313 4.66198 4.68531 4.74231 4.78438 4.85936 4.89206 4.97909 5.00611 5.01611 5.05966 5.11761 5.21504 5.22621 5.27157 5.43530 5.52221 5.61829 5.67442 5.75837 5.97866 6.11603 6.18488 6.34698 6.45299 6.66531 6.74427 6.90958 6.97474 7.31264 8.88634 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.026165 B = 0.001683 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.855031 B =16634.639055 C =16813.466845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.054 3.946 3 H 0.057 0.943 4 N -0.682 5.682 5 C 0.041 3.959 6 C 0.124 3.876 7 H 0.089 0.911 8 O -0.563 6.563 9 C 0.023 3.977 10 N -0.541 5.541 11 C 0.041 3.959 12 C 0.172 3.828 13 C -0.519 4.519 14 H 0.033 0.967 15 C 0.005 3.995 16 N -0.949 5.949 17 Si 0.952 3.048 18 H -0.264 1.264 19 H -0.282 1.282 20 H -0.250 1.250 21 C 0.123 3.877 22 H 0.083 0.917 23 O -0.562 6.562 24 C -0.106 4.106 25 C -0.085 4.085 26 C -0.117 4.117 27 C -0.133 4.133 28 C -0.138 4.138 29 C -0.133 4.133 30 C -0.135 4.135 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.051 0.949 34 H 0.345 0.655 35 H 0.043 0.957 36 H 0.083 0.917 37 H 0.379 0.621 38 H 0.042 0.958 39 H 0.078 0.922 40 H 0.021 0.979 41 H 0.044 0.956 42 H 0.073 0.927 43 H -0.013 1.013 44 H 0.030 0.970 45 H 0.267 0.733 46 H 0.381 0.619 47 H 0.091 0.909 48 H 0.093 0.907 49 H 0.131 0.869 50 H 0.134 0.866 51 H 0.134 0.866 52 H 0.133 0.867 53 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.033 4.636 35.487 37.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.055 4.055 3 H 0.074 0.926 4 N -0.315 5.315 5 C -0.089 4.089 6 C 0.065 3.935 7 H 0.106 0.894 8 O -0.369 6.369 9 C -0.106 4.106 10 N -0.265 5.265 11 C -0.107 4.107 12 C 0.045 3.955 13 C -0.557 4.557 14 H 0.052 0.948 15 C -0.192 4.192 16 N -0.590 5.590 17 Si 0.775 3.225 18 H -0.188 1.188 19 H -0.207 1.207 20 H -0.174 1.174 21 C 0.063 3.937 22 H 0.101 0.899 23 O -0.370 6.370 24 C -0.144 4.144 25 C -0.085 4.085 26 C -0.135 4.135 27 C -0.150 4.150 28 C -0.156 4.156 29 C -0.150 4.150 30 C -0.153 4.153 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.070 0.930 34 H 0.165 0.835 35 H 0.061 0.939 36 H 0.101 0.899 37 H 0.226 0.774 38 H 0.060 0.940 39 H 0.096 0.904 40 H 0.040 0.960 41 H 0.063 0.937 42 H 0.091 0.909 43 H 0.005 0.995 44 H 0.048 0.952 45 H 0.076 0.924 46 H 0.230 0.770 47 H 0.109 0.891 48 H 0.112 0.888 49 H 0.149 0.851 50 H 0.152 0.848 51 H 0.152 0.848 52 H 0.151 0.849 53 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.836 3.396 35.109 36.619 hybrid contribution 0.049 2.058 -0.686 2.170 sum -9.788 5.454 34.424 36.201 Atomic orbital electron populations 1.21864 0.93648 1.02573 1.02316 1.22267 0.97224 0.96376 0.89674 0.92554 1.60317 1.34416 1.32669 1.04082 1.22539 1.01585 0.93824 0.90991 1.21830 0.84715 0.95917 0.91088 0.89350 1.86613 1.20008 1.38244 1.92016 1.22889 0.99920 0.96412 0.91376 1.61734 1.41819 1.18277 1.04647 1.22194 0.91722 0.96094 1.00685 1.19948 0.94330 0.92064 0.89154 1.21290 1.39930 0.95501 0.99001 0.94820 1.25911 0.94379 1.03840 0.95079 1.70064 1.43934 1.38456 1.06535 0.85648 0.79890 0.79204 0.77747 1.18841 1.20742 1.17419 1.21915 0.97520 0.82798 0.91484 0.89924 1.86619 1.26140 1.27623 1.96588 1.21338 1.02149 0.99609 0.91299 1.19923 0.94896 0.97094 0.96621 1.21246 1.00644 0.96194 0.95436 1.21444 0.96152 1.00239 0.97212 1.21435 0.95460 0.97986 1.00758 1.21409 1.00577 0.97063 0.95999 1.21308 0.95642 1.00939 0.97397 0.91881 0.90408 0.92995 0.83529 0.93882 0.89860 0.77360 0.93985 0.90351 0.96033 0.93673 0.90856 0.99488 0.95230 0.92427 0.76986 0.89076 0.88825 0.85115 0.84806 0.84811 0.84872 0.85279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 8.75 71.98 0.63 -0.97 16 2 C 0.05 0.71 2.49 44.92 0.11 0.82 16 3 H 0.06 0.67 7.80 -2.39 -0.02 0.65 16 4 N -0.68 -12.55 6.26 -491.57 -3.08 -15.62 16 5 C 0.04 0.77 5.19 86.30 0.45 1.22 16 6 C 0.12 3.23 3.20 30.60 0.10 3.33 16 7 H 0.09 2.60 6.34 -2.39 -0.02 2.59 16 8 O -0.56 -16.16 12.62 -148.98 -1.88 -18.04 16 9 C 0.02 0.70 4.59 86.30 0.40 1.10 16 10 N -0.54 -22.59 4.70 -927.05 -4.36 -26.95 16 11 C 0.04 1.64 9.14 127.69 1.17 2.81 16 12 C 0.17 8.32 3.79 85.56 0.32 8.64 16 13 C -0.52 -30.75 9.01 25.60 0.23 -30.51 16 14 H 0.03 2.25 7.37 -2.91 -0.02 2.23 16 15 C 0.00 0.29 5.47 84.66 0.46 0.75 16 16 N -0.95 -60.28 13.96 21.45 0.30 -59.98 16 17 Si 0.95 44.11 27.47 68.60 1.88 45.99 16 18 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 20 H -0.25 -10.76 6.54 99.48 0.65 -10.11 16 21 C 0.12 1.59 2.66 30.60 0.08 1.67 16 22 H 0.08 1.31 8.02 -2.39 -0.02 1.29 16 23 O -0.56 -9.14 12.69 -148.98 -1.89 -11.03 16 24 C -0.11 -1.02 4.66 29.85 0.14 -0.88 16 25 C -0.09 -1.16 4.96 -19.87 -0.10 -1.26 16 26 C -0.12 -1.61 9.41 22.27 0.21 -1.40 16 27 C -0.13 -1.81 10.05 22.27 0.22 -1.58 16 28 C -0.14 -1.88 10.05 22.27 0.22 -1.65 16 29 C -0.13 -1.83 10.05 22.27 0.22 -1.61 16 30 C -0.13 -1.90 9.70 22.27 0.22 -1.68 16 31 H 0.06 0.74 6.71 -2.39 -0.02 0.72 16 32 H 0.08 0.53 6.68 -2.39 -0.02 0.51 16 33 H 0.05 0.67 7.45 -2.38 -0.02 0.65 16 34 H 0.35 7.12 7.67 -89.70 -0.69 6.43 16 35 H 0.04 0.71 8.06 -2.39 -0.02 0.69 16 36 H 0.08 1.50 7.44 -2.39 -0.02 1.48 16 37 H 0.38 8.35 9.05 -74.06 -0.67 7.68 16 38 H 0.04 1.20 8.12 -2.38 -0.02 1.18 16 39 H 0.08 2.23 7.93 -2.39 -0.02 2.21 16 40 H 0.02 0.78 8.14 -2.39 -0.02 0.77 16 41 H 0.04 2.08 6.76 -2.38 -0.02 2.07 16 42 H 0.07 2.56 6.37 -2.39 -0.02 2.54 16 43 H -0.01 -0.60 7.18 -2.39 -0.02 -0.62 16 44 H 0.03 1.38 7.36 -2.39 -0.02 1.36 16 45 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 46 H 0.38 4.06 7.19 -74.06 -0.53 3.52 16 47 H 0.09 0.71 8.09 -2.39 -0.02 0.69 16 48 H 0.09 0.64 6.76 -2.38 -0.02 0.63 16 49 H 0.13 1.37 8.06 -2.91 -0.02 1.35 16 50 H 0.13 1.31 8.06 -2.91 -0.02 1.29 16 51 H 0.13 1.28 8.06 -2.91 -0.02 1.26 16 52 H 0.13 1.35 8.06 -2.91 -0.02 1.32 16 53 H 0.13 1.43 8.06 -2.91 -0.02 1.40 16 Total: -1.00 -74.15 416.69 -4.97 -79.12 By element: Atomic # 1 Polarization: 28.78 SS G_CDS: -1.03 Total: 27.75 kcal Atomic # 6 Polarization: -26.32 SS G_CDS: 5.09 Total: -21.23 kcal Atomic # 7 Polarization: -95.42 SS G_CDS: -7.14 Total: -102.56 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -3.77 Total: -29.07 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.88 Total: 45.99 kcal Total: -74.15 -4.97 -79.12 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580564363.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.600 kcal (2) G-P(sol) polarization free energy of solvation -74.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds