Wall clock time and date at job start Tue Mar 31 2020 19:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46813 * 2 1 4 4 N 1.46905 * 109.47102 * 240.00077 * 2 1 3 5 5 C 1.46901 * 110.99870 * 85.00132 * 4 2 1 6 6 C 1.53004 * 109.46916 * 180.02562 * 5 4 2 7 7 H 1.09000 * 109.46869 * 304.99619 * 6 5 4 8 8 O 1.42897 * 109.46931 * 64.99951 * 6 5 4 9 9 C 1.52999 * 109.46840 * 184.99885 * 6 5 4 10 10 N 1.46898 * 109.46843 * 179.97438 * 9 6 5 11 11 C 1.46896 * 111.00345 * 293.95110 * 10 9 6 12 12 C 1.46900 * 110.99927 * 169.99939 * 10 9 6 13 13 C 1.50694 * 109.47336 * 190.00135 * 12 10 9 14 14 H 1.08007 * 120.00273 * 359.97438 * 13 12 10 15 15 C 1.37885 * 120.00226 * 180.02562 * 13 12 10 16 16 N 1.31506 * 119.99718 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99973 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47098 * 90.00054 * 17 15 13 19 19 H 1.48496 * 109.47056 * 209.99917 * 17 15 13 20 20 H 1.48505 * 109.47177 * 330.00132 * 17 15 13 21 21 C 1.52996 * 109.47194 * 120.00416 * 2 1 3 22 22 H 1.08999 * 109.47473 * 175.00631 * 21 2 1 23 23 O 1.42893 * 109.47485 * 54.99827 * 21 2 1 24 24 C 1.53007 * 109.46704 * 294.99626 * 21 2 1 25 25 C 1.50704 * 109.47229 * 184.99879 * 24 21 2 26 26 C 1.38236 * 120.00137 * 269.73423 * 25 24 21 27 27 C 1.38231 * 119.99942 * 179.76474 * 26 25 24 28 28 C 1.38241 * 120.00034 * 0.50344 * 27 26 25 29 29 C 1.38236 * 119.99612 * 359.74825 * 28 27 26 30 30 C 1.38230 * 119.99769 * 89.99924 * 25 24 21 31 31 H 1.08996 * 109.46950 * 59.99838 * 1 2 3 32 32 H 1.09003 * 109.46813 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47105 * 300.00114 * 1 2 3 34 34 H 1.00901 * 110.99869 * 321.04843 * 4 2 1 35 35 H 1.09004 * 109.47031 * 299.99620 * 5 4 2 36 36 H 1.08995 * 109.47111 * 59.99900 * 5 4 2 37 37 H 0.96693 * 114.00429 * 60.00369 * 8 6 5 38 38 H 1.09000 * 109.47172 * 299.99548 * 9 6 5 39 39 H 1.08997 * 109.47237 * 59.99969 * 9 6 5 40 40 H 1.09007 * 109.46899 * 60.00097 * 11 10 9 41 41 H 1.08995 * 109.47385 * 179.97438 * 11 10 9 42 42 H 1.09004 * 109.47400 * 300.00654 * 11 10 9 43 43 H 1.09002 * 109.47174 * 310.00052 * 12 10 9 44 44 H 1.09002 * 109.47291 * 69.99786 * 12 10 9 45 45 H 0.97006 * 120.00144 * 180.02562 * 16 15 13 46 46 H 0.96701 * 114.00206 * 299.99920 * 23 21 2 47 47 H 1.08997 * 109.47641 * 305.00360 * 24 21 2 48 48 H 1.09002 * 109.47013 * 65.00381 * 24 21 2 49 49 H 1.08001 * 120.00216 * 359.97438 * 26 25 24 50 50 H 1.08003 * 120.00180 * 180.22743 * 27 26 25 51 51 H 1.07993 * 120.00328 * 179.72746 * 28 27 26 52 52 H 1.07999 * 119.99643 * 179.97438 * 29 28 27 53 53 H 1.08007 * 120.00378 * 0.02562 * 30 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0825 0.2226 -2.3469 6 6 2.5951 -0.5332 -3.5745 7 1 3.5507 -1.0019 -3.3397 8 8 1.6492 -1.5385 -3.9441 9 6 2.7790 0.4457 -4.7359 10 7 3.2717 -0.2798 -5.9144 11 6 4.6239 -0.8045 -5.6823 12 6 3.2359 0.5725 -7.1103 13 6 3.5101 -0.2651 -8.3326 14 1 3.6932 -1.3247 -8.2312 15 6 3.5285 0.3213 -9.5804 16 7 3.3071 1.6117 -9.7037 17 14 3.8691 -0.7170 -11.0954 18 1 2.5885 -1.2415 -11.6342 19 1 4.5357 0.1171 -12.1274 20 1 4.7538 -1.8520 -10.7290 21 6 2.0400 -0.7213 1.2491 22 1 3.1263 -0.7995 1.2056 23 8 1.4703 -2.0304 1.3093 24 6 1.6353 0.0689 2.4953 25 6 2.2410 -0.5738 3.7164 26 6 1.5440 -1.5525 4.4000 27 6 2.1016 -2.1454 5.5173 28 6 3.3519 -1.7523 5.9571 29 6 4.0466 -0.7700 5.2764 30 6 3.4912 -0.1808 4.1561 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.4495 -1.4979 -1.4101 35 1 1.0871 0.6163 -2.5526 36 1 2.7589 1.0462 -2.1182 37 1 0.7743 -1.1925 -4.1669 38 1 1.8234 0.9145 -4.9708 39 1 3.5004 1.2126 -4.4540 40 1 4.6078 -1.4876 -4.8329 41 1 4.9642 -1.3375 -6.5701 42 1 5.3030 0.0216 -5.4712 43 1 2.2520 1.0332 -7.1989 44 1 3.9949 1.3503 -7.0250 45 1 3.3196 2.0243 -10.5816 46 1 0.5042 -2.0374 1.3503 47 1 1.9949 1.0942 2.4081 48 1 0.5491 0.0714 2.5870 49 1 0.5652 -1.8563 4.0593 50 1 1.5587 -2.9127 6.0493 51 1 3.7857 -2.2124 6.8325 52 1 5.0232 -0.4626 5.6203 53 1 4.0338 0.5872 3.6247 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580564365.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:41 Heat of formation + Delta-G solvation = -105.248893 kcal Electronic energy + Delta-G solvation = -28652.572812 eV Core-core repulsion = 24715.502670 eV Total energy + Delta-G solvation = -3937.070142 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.55975 -39.71841 -38.92226 -37.25207 -35.80801 -34.62100 -33.76541 -32.11792 -31.70488 -30.32218 -28.98585 -28.64272 -27.27773 -25.74867 -24.56677 -23.39578 -22.67592 -22.09085 -21.78043 -21.24284 -18.57660 -18.10169 -17.56610 -17.18562 -17.07604 -16.70991 -16.63634 -16.06693 -16.03064 -15.80501 -15.70372 -15.57542 -15.28538 -14.91822 -14.79004 -14.21391 -14.10867 -13.79148 -13.67868 -13.61523 -13.47704 -13.26349 -13.16047 -12.97605 -12.76727 -12.55648 -12.54701 -12.42892 -12.36434 -12.22146 -12.01229 -11.98295 -11.76617 -11.71154 -11.60891 -11.42663 -11.07252 -10.62278 -10.60380 -9.75614 -9.51240 -9.23887 -8.96490 -8.21345 -6.31129 0.50751 0.56733 1.40918 1.42338 1.53677 2.39960 2.82184 3.01099 3.11160 3.39245 3.60544 3.71077 3.82246 3.95518 4.02041 4.06203 4.14100 4.18406 4.22434 4.25703 4.33172 4.35192 4.40134 4.43272 4.47877 4.56689 4.68135 4.69779 4.71702 4.73478 4.81615 4.86258 4.91606 4.97787 5.06430 5.10164 5.16069 5.17802 5.20487 5.24285 5.31802 5.36934 5.62964 5.64325 5.68230 5.77655 6.03582 6.11017 6.19739 6.31788 6.50272 6.63547 6.84866 6.93235 6.97089 7.38593 8.89562 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.029203 B = 0.001614 C = 0.001594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.583813 B =17348.439607 C =17560.914157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.055 3.945 3 H 0.086 0.914 4 N -0.683 5.683 5 C 0.041 3.959 6 C 0.128 3.872 7 H 0.090 0.910 8 O -0.560 6.560 9 C 0.025 3.975 10 N -0.538 5.538 11 C 0.042 3.958 12 C 0.207 3.793 13 C -0.525 4.525 14 H 0.060 0.940 15 C 0.002 3.998 16 N -0.934 5.934 17 Si 0.970 3.030 18 H -0.272 1.272 19 H -0.281 1.281 20 H -0.266 1.266 21 C 0.135 3.865 22 H 0.081 0.919 23 O -0.566 6.566 24 C -0.108 4.108 25 C -0.084 4.084 26 C -0.118 4.118 27 C -0.132 4.132 28 C -0.139 4.139 29 C -0.133 4.133 30 C -0.136 4.136 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.349 0.651 35 H 0.043 0.957 36 H 0.080 0.920 37 H 0.378 0.622 38 H 0.069 0.931 39 H 0.031 0.969 40 H 0.074 0.926 41 H 0.054 0.946 42 H 0.010 0.990 43 H 0.005 0.995 44 H -0.039 1.039 45 H 0.265 0.735 46 H 0.378 0.622 47 H 0.090 0.910 48 H 0.093 0.907 49 H 0.131 0.869 50 H 0.135 0.865 51 H 0.134 0.866 52 H 0.133 0.867 53 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.184 -2.418 32.486 33.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.056 4.056 3 H 0.105 0.895 4 N -0.315 5.315 5 C -0.089 4.089 6 C 0.068 3.932 7 H 0.108 0.892 8 O -0.365 6.365 9 C -0.104 4.104 10 N -0.262 5.262 11 C -0.107 4.107 12 C 0.081 3.919 13 C -0.563 4.563 14 H 0.078 0.922 15 C -0.196 4.196 16 N -0.575 5.575 17 Si 0.794 3.206 18 H -0.198 1.198 19 H -0.206 1.206 20 H -0.191 1.191 21 C 0.075 3.925 22 H 0.099 0.901 23 O -0.373 6.373 24 C -0.146 4.146 25 C -0.084 4.084 26 C -0.136 4.136 27 C -0.150 4.150 28 C -0.157 4.157 29 C -0.151 4.151 30 C -0.154 4.154 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.169 0.831 35 H 0.061 0.939 36 H 0.099 0.901 37 H 0.226 0.774 38 H 0.087 0.913 39 H 0.050 0.950 40 H 0.092 0.908 41 H 0.073 0.927 42 H 0.029 0.971 43 H 0.023 0.977 44 H -0.022 1.022 45 H 0.073 0.927 46 H 0.227 0.773 47 H 0.108 0.892 48 H 0.111 0.889 49 H 0.149 0.851 50 H 0.153 0.847 51 H 0.152 0.848 52 H 0.151 0.849 53 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.705 -3.163 32.520 33.010 hybrid contribution -1.025 1.358 -1.259 2.117 sum -5.730 -1.805 31.260 31.833 Atomic orbital electron populations 1.22514 0.95767 1.02933 1.03280 1.22280 0.94174 0.98306 0.90792 0.89536 1.60354 1.58418 1.09562 1.03151 1.22514 1.00316 0.95498 0.90602 1.21775 0.93134 0.88206 0.90098 0.89192 1.86572 1.24684 1.35362 1.89898 1.22822 1.00121 0.95606 0.91884 1.61929 1.23763 1.37597 1.02935 1.22203 0.88638 0.98512 1.01325 1.19402 0.93937 0.90607 0.87972 1.21478 1.47685 0.95345 0.91792 0.92165 1.25904 0.95048 0.96221 1.02438 1.70076 1.50958 1.11668 1.24756 0.85377 0.78571 0.78437 0.78192 1.19781 1.20634 1.19066 1.21760 0.97768 0.82187 0.90792 0.90128 1.86646 1.25790 1.28236 1.96670 1.21363 1.01973 0.99721 0.91498 1.19933 0.94872 0.97069 0.96566 1.21239 1.00648 0.96200 0.95466 1.21442 0.96140 1.00243 0.97207 1.21430 0.95484 0.97984 1.00771 1.21407 1.00574 0.97105 0.95986 1.21312 0.95690 1.00976 0.97380 0.92728 0.91453 0.90095 0.83135 0.93893 0.90133 0.77390 0.91292 0.95039 0.90794 0.92728 0.97110 0.97669 1.02170 0.92672 0.77313 0.89176 0.88898 0.85070 0.84742 0.84769 0.84900 0.85418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.87 8.49 71.98 0.61 -1.25 16 2 C 0.05 0.75 2.46 44.91 0.11 0.86 16 3 H 0.09 1.16 7.80 -2.39 -0.02 1.14 16 4 N -0.68 -13.19 6.20 -491.55 -3.05 -16.23 16 5 C 0.04 0.84 5.16 86.30 0.44 1.29 16 6 C 0.13 3.53 3.08 30.60 0.09 3.63 16 7 H 0.09 2.75 6.55 -2.39 -0.02 2.73 16 8 O -0.56 -16.41 12.72 -148.98 -1.90 -18.30 16 9 C 0.02 0.86 4.62 86.30 0.40 1.25 16 10 N -0.54 -23.75 4.62 -927.07 -4.28 -28.03 16 11 C 0.04 1.69 9.14 127.69 1.17 2.86 16 12 C 0.21 11.24 4.72 85.56 0.40 11.64 16 13 C -0.52 -30.47 8.46 25.60 0.22 -30.25 16 14 H 0.06 3.47 7.12 -2.91 -0.02 3.45 16 15 C 0.00 0.11 5.46 84.66 0.46 0.57 16 16 N -0.93 -56.61 13.29 21.45 0.28 -56.33 16 17 Si 0.97 44.98 29.54 68.60 2.03 47.00 16 18 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 19 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 21 C 0.13 1.95 2.95 30.60 0.09 2.04 16 22 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 23 O -0.57 -9.31 12.69 -148.98 -1.89 -11.20 16 24 C -0.11 -1.16 4.66 29.85 0.14 -1.02 16 25 C -0.08 -1.24 4.96 -19.87 -0.10 -1.34 16 26 C -0.12 -1.69 9.41 22.27 0.21 -1.48 16 27 C -0.13 -1.87 10.05 22.27 0.22 -1.65 16 28 C -0.14 -1.97 10.05 22.27 0.22 -1.75 16 29 C -0.13 -1.96 10.05 22.27 0.22 -1.74 16 30 C -0.14 -2.09 9.70 22.27 0.22 -1.87 16 31 H 0.05 0.65 7.45 -2.39 -0.02 0.63 16 32 H 0.07 0.62 6.70 -2.39 -0.02 0.60 16 33 H 0.08 0.55 6.68 -2.39 -0.02 0.53 16 34 H 0.35 7.20 8.03 -89.69 -0.72 6.48 16 35 H 0.04 0.80 7.44 -2.39 -0.02 0.78 16 36 H 0.08 1.62 8.05 -2.39 -0.02 1.60 16 37 H 0.38 8.90 9.04 -74.06 -0.67 8.23 16 38 H 0.07 2.33 7.93 -2.39 -0.02 2.31 16 39 H 0.03 1.07 8.12 -2.39 -0.02 1.05 16 40 H 0.07 2.61 6.47 -2.38 -0.02 2.60 16 41 H 0.05 2.41 6.76 -2.39 -0.02 2.39 16 42 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 43 H 0.01 0.30 7.93 -2.39 -0.02 0.28 16 44 H -0.04 -2.31 8.12 -2.39 -0.02 -2.33 16 45 H 0.26 15.03 8.31 -92.70 -0.77 14.26 16 46 H 0.38 3.69 7.19 -74.06 -0.53 3.16 16 47 H 0.09 0.83 8.09 -2.39 -0.02 0.81 16 48 H 0.09 0.70 6.76 -2.39 -0.02 0.68 16 49 H 0.13 1.42 8.06 -2.91 -0.02 1.40 16 50 H 0.13 1.36 8.06 -2.91 -0.02 1.34 16 51 H 0.13 1.35 8.06 -2.91 -0.02 1.33 16 52 H 0.13 1.47 8.06 -2.91 -0.02 1.44 16 53 H 0.13 1.63 8.06 -2.91 -0.02 1.61 16 Total: -1.00 -70.86 420.91 -4.68 -75.54 By element: Atomic # 1 Polarization: 26.78 SS G_CDS: -1.01 Total: 25.76 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: 5.14 Total: -18.22 kcal Atomic # 7 Polarization: -93.55 SS G_CDS: -7.04 Total: -100.59 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -3.79 Total: -29.50 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -70.86 -4.68 -75.54 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580564365.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.704 kcal (2) G-P(sol) polarization free energy of solvation -70.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds