Wall clock time and date at job start Tue Mar 31 2020 20:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47077 * 2 1 4 4 C 1.50703 * 109.46771 * 240.00448 * 2 1 3 5 5 O 1.21283 * 119.99488 * 239.99768 * 4 2 1 6 6 N 1.34777 * 120.00290 * 60.00208 * 4 2 1 7 7 C 1.46498 * 119.99828 * 180.27728 * 6 4 2 8 8 C 1.52996 * 109.47059 * 179.72339 * 7 6 4 9 9 C 1.50697 * 109.47491 * 179.97438 * 8 7 6 10 10 C 1.29451 * 117.96642 * 94.99434 * 9 8 7 11 11 C 1.50062 * 124.07693 * 180.44833 * 10 9 8 12 12 C 1.53030 * 110.14878 * 342.87266 * 11 10 9 13 13 C 1.53388 * 108.43632 * 49.43767 * 12 11 10 14 14 C 1.50072 * 117.96113 * 274.73774 * 9 8 7 15 15 N 1.46896 * 109.47354 * 120.00360 * 2 1 3 16 16 C 1.47897 * 111.00116 * 179.87171 * 15 2 1 17 17 C 1.53992 * 107.05681 * 214.15470 * 16 15 2 18 18 C 1.54596 * 105.14139 * 1.22479 * 17 16 15 19 19 O 1.42904 * 110.72518 * 263.42157 * 18 17 16 20 20 C 1.50701 * 110.72394 * 140.31415 * 18 17 16 21 21 H 1.07994 * 120.00190 * 241.45369 * 20 18 17 22 22 C 1.37883 * 119.99778 * 61.45721 * 20 18 17 23 23 N 1.31515 * 120.00186 * 359.97438 * 22 20 18 24 24 Si 1.86797 * 119.99684 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47452 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47245 * 119.99849 * 24 22 20 27 27 H 1.48497 * 109.46970 * 239.99684 * 24 22 20 28 28 C 1.48532 * 110.99846 * 62.47225 * 15 2 1 29 29 H 1.09008 * 109.47076 * 59.99403 * 1 2 3 30 30 H 1.08992 * 109.47503 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46818 * 300.00015 * 1 2 3 32 32 H 0.97001 * 119.99727 * 359.97438 * 6 4 2 33 33 H 1.09004 * 109.46963 * 299.72135 * 7 6 4 34 34 H 1.08994 * 109.47567 * 59.72287 * 7 6 4 35 35 H 1.09004 * 109.47066 * 299.99732 * 8 7 6 36 36 H 1.09000 * 109.47665 * 59.99541 * 8 7 6 37 37 H 1.07997 * 117.95671 * 0.47518 * 10 9 8 38 38 H 1.09004 * 109.35604 * 103.08124 * 11 10 9 39 39 H 1.08998 * 109.35907 * 222.66676 * 11 10 9 40 40 H 1.08996 * 109.63945 * 169.12046 * 12 11 10 41 41 H 1.09001 * 109.63958 * 289.53750 * 12 11 10 42 42 H 1.08996 * 109.64748 * 52.24693 * 13 12 11 43 43 H 1.09006 * 109.64054 * 172.67410 * 13 12 11 44 44 H 1.09005 * 109.35367 * 283.09082 * 14 9 8 45 45 H 1.08993 * 109.35858 * 42.67922 * 14 9 8 46 46 H 1.08994 * 109.91934 * 333.50895 * 16 15 2 47 47 H 1.09005 * 109.91596 * 94.80195 * 16 15 2 48 48 H 1.08999 * 110.31036 * 120.14273 * 17 16 15 49 49 H 1.09000 * 110.30867 * 242.31103 * 17 16 15 50 50 H 0.96701 * 113.99385 * 298.54408 * 19 18 17 51 51 H 0.96998 * 120.00017 * 180.02562 * 23 22 20 52 52 H 1.09001 * 110.67071 * 278.15646 * 28 15 2 53 53 H 1.08996 * 110.66549 * 41.29087 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.7295 -1.6964 -1.1193 6 7 1.7067 -0.2498 -2.4546 7 6 2.1900 -0.9439 -3.6508 8 6 1.6754 -0.2259 -4.9000 9 6 2.1730 -0.9394 -6.1305 10 6 1.3963 -1.8181 -6.6785 11 6 1.7563 -2.6142 -7.8985 12 6 2.9330 -1.9603 -8.6263 13 6 4.0373 -1.6718 -7.6015 14 6 3.5359 -0.5830 -6.6478 15 7 2.0197 -0.6925 1.1993 16 6 3.4982 -0.7149 1.2319 17 6 3.9155 -2.0460 1.8842 18 6 2.5893 -2.7810 2.1861 19 8 2.1892 -2.5662 3.5411 20 6 2.7186 -4.2544 1.8974 21 1 2.0928 -4.7146 1.1472 22 6 3.6358 -5.0150 2.5913 23 7 4.3982 -4.4545 3.5047 24 14 3.7965 -6.8412 2.2329 25 1 2.8328 -7.2238 1.1698 26 1 5.1789 -7.1367 1.7781 27 1 3.5051 -7.6151 3.4663 28 6 1.5929 -2.1152 1.2040 29 1 -0.3634 0.5140 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.1488 0.5387 -2.5436 33 1 3.2800 -0.9444 -3.6551 34 1 1.8262 -1.9714 -3.6466 35 1 0.5854 -0.2253 -4.8957 36 1 2.0392 0.8017 -4.9043 37 1 0.4288 -1.9885 -6.2299 38 1 2.0324 -3.6259 -7.6013 39 1 0.8971 -2.6583 -8.5677 40 1 3.3117 -2.6370 -9.3923 41 1 2.6058 -1.0293 -9.0891 42 1 4.2633 -2.5789 -7.0411 43 1 4.9338 -1.3263 -8.1165 44 1 3.4841 0.3690 -7.1763 45 1 4.2278 -0.4919 -5.8106 46 1 3.8929 -0.6587 0.2175 47 1 3.8692 0.1214 1.8244 48 1 4.5237 -2.6310 1.1945 49 1 4.4632 -1.8593 2.8079 50 1 2.8199 -2.8981 4.1947 51 1 5.0437 -4.9895 3.9925 52 1 0.5707 -2.2091 1.5706 53 1 1.6869 -2.5483 0.2082 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592148575.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:36 Heat of formation + Delta-G solvation = -100.438588 kcal Electronic energy + Delta-G solvation = -30299.763859 eV Core-core repulsion = 26362.902308 eV Total energy + Delta-G solvation = -3936.861551 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.70177 -39.83190 -39.14401 -36.77606 -36.17625 -34.15819 -34.11223 -32.99452 -31.64503 -29.95610 -29.68937 -28.82019 -26.81771 -25.24609 -24.19487 -23.64227 -22.27644 -22.17919 -21.49862 -20.84712 -18.97289 -18.49186 -18.13307 -17.45207 -16.93485 -16.84926 -16.54220 -16.34562 -15.79867 -15.68217 -15.49654 -15.22633 -14.97826 -14.64936 -14.60985 -14.27171 -14.08711 -13.79736 -13.54884 -13.49416 -13.35295 -13.21921 -13.00781 -12.96301 -12.91446 -12.73232 -12.64822 -12.50771 -12.29018 -12.17909 -12.10048 -11.90325 -11.69390 -11.65790 -11.33904 -11.22350 -11.04647 -11.01384 -10.59344 -10.09274 -10.04702 -9.69502 -9.11599 -8.21315 -6.35165 1.26253 1.34792 1.36067 1.48283 1.61377 2.24632 2.36793 3.01639 3.09987 3.70555 3.77042 3.87342 3.97128 3.99745 4.02984 4.11296 4.12629 4.15716 4.28945 4.34458 4.40294 4.44064 4.47331 4.57704 4.61442 4.68439 4.71722 4.75899 4.85788 4.88195 4.89716 4.93109 4.98625 5.02729 5.05917 5.10677 5.12709 5.17156 5.28226 5.31397 5.33738 5.44248 5.47744 5.55157 5.60145 5.74205 5.75544 5.90239 6.09507 6.12412 6.25900 6.58517 6.68675 7.29770 7.34946 7.49010 8.84700 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.011705 B = 0.002839 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.570631 B = 9859.913443 C =11410.966603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.049 3.951 3 H 0.134 0.866 4 C 0.476 3.524 5 O -0.565 6.565 6 N -0.713 5.713 7 C 0.128 3.872 8 C -0.084 4.084 9 C -0.129 4.129 10 C -0.159 4.159 11 C -0.094 4.094 12 C -0.118 4.118 13 C -0.124 4.124 14 C -0.085 4.085 15 N -0.490 5.490 16 C 0.044 3.956 17 C -0.107 4.107 18 C 0.241 3.759 19 O -0.588 6.588 20 C -0.554 4.554 21 H 0.042 0.958 22 C 0.026 3.974 23 N -0.912 5.912 24 Si 0.958 3.042 25 H -0.275 1.275 26 H -0.278 1.278 27 H -0.272 1.272 28 C 0.057 3.943 29 H 0.100 0.900 30 H 0.039 0.961 31 H 0.081 0.919 32 H 0.417 0.583 33 H 0.048 0.952 34 H 0.041 0.959 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.050 0.950 43 H 0.074 0.926 44 H 0.086 0.914 45 H 0.064 0.936 46 H 0.046 0.954 47 H 0.075 0.925 48 H 0.027 0.973 49 H 0.043 0.957 50 H 0.370 0.630 51 H 0.268 0.732 52 H 0.058 0.942 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.913 13.369 -22.923 27.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.063 4.063 3 H 0.151 0.849 4 C 0.262 3.738 5 O -0.444 6.444 6 N -0.368 5.368 7 C 0.004 3.996 8 C -0.122 4.122 9 C -0.129 4.129 10 C -0.177 4.177 11 C -0.131 4.131 12 C -0.155 4.155 13 C -0.161 4.161 14 C -0.122 4.122 15 N -0.213 5.213 16 C -0.083 4.083 17 C -0.146 4.146 18 C 0.201 3.799 19 O -0.396 6.396 20 C -0.592 4.592 21 H 0.061 0.939 22 C -0.174 4.174 23 N -0.552 5.552 24 Si 0.783 3.217 25 H -0.200 1.200 26 H -0.204 1.204 27 H -0.197 1.197 28 C -0.070 4.070 29 H 0.118 0.882 30 H 0.058 0.942 31 H 0.100 0.900 32 H 0.255 0.745 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.105 0.895 36 H 0.110 0.890 37 H 0.122 0.878 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.069 0.931 43 H 0.093 0.907 44 H 0.104 0.896 45 H 0.083 0.917 46 H 0.064 0.936 47 H 0.093 0.907 48 H 0.046 0.954 49 H 0.062 0.938 50 H 0.218 0.782 51 H 0.077 0.923 52 H 0.076 0.924 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.018 13.212 -22.559 26.827 hybrid contribution 1.075 -1.818 -0.249 2.127 sum -4.944 11.393 -22.809 25.971 Atomic orbital electron populations 1.21771 0.90109 1.02376 1.04692 1.22335 0.99096 0.99852 0.85060 0.84889 1.22451 0.79859 0.84813 0.86686 1.90789 1.38999 1.27783 1.86821 1.46025 1.53815 1.32287 1.04635 1.21201 0.98535 0.95731 0.84114 1.20853 1.01637 0.99703 0.89989 1.20794 0.96690 0.98824 0.96636 1.22145 0.99816 0.97493 0.98225 1.20490 0.99035 0.98433 0.95133 1.21594 0.95161 1.01209 0.97532 1.21652 0.98660 0.98514 0.97318 1.20454 0.93290 0.99436 0.98970 1.65131 1.08780 1.13927 1.33415 1.22807 0.88381 0.97844 0.99297 1.22523 0.99313 0.94673 0.98103 1.19513 0.89332 0.91388 0.79621 1.86118 1.51616 1.84045 1.17799 1.21824 1.20654 0.95467 1.21281 0.93932 1.25695 0.94347 1.02830 0.94486 1.69827 1.23311 1.37291 1.24730 0.85522 0.77794 0.80171 0.78195 1.20022 1.20360 1.19713 1.23175 0.97815 0.87619 0.98434 0.88165 0.94156 0.90013 0.74544 0.93344 0.94039 0.89484 0.88966 0.87796 0.91480 0.90061 0.91016 0.91215 0.93100 0.90683 0.89601 0.91730 0.93615 0.90697 0.95391 0.93775 0.78166 0.92271 0.92357 0.91800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 9.00 71.98 0.65 -2.30 16 2 C 0.05 1.41 2.85 44.17 0.13 1.53 16 3 H 0.13 2.94 8.14 -2.39 -0.02 2.92 16 4 C 0.48 14.88 6.04 87.66 0.53 15.41 16 5 O -0.57 -24.48 11.75 -3.04 -0.04 -24.51 16 6 N -0.71 -15.11 5.45 -463.07 -2.52 -17.64 16 7 C 0.13 2.82 5.66 86.38 0.49 3.31 16 8 C -0.08 -1.18 5.34 29.85 0.16 -1.02 16 9 C -0.13 -2.03 5.09 -15.10 -0.08 -2.11 16 10 C -0.16 -2.54 9.37 27.03 0.25 -2.28 16 11 C -0.09 -1.31 6.11 29.66 0.18 -1.13 16 12 C -0.12 -1.46 6.00 30.73 0.18 -1.27 16 13 C -0.12 -1.77 6.02 30.79 0.19 -1.58 16 14 C -0.08 -1.23 5.80 29.71 0.17 -1.06 16 15 N -0.49 -19.65 5.30 -862.26 -4.57 -24.22 16 16 C 0.04 1.91 6.00 86.45 0.52 2.43 16 17 C -0.11 -5.66 5.26 31.47 0.17 -5.50 16 18 C 0.24 13.39 0.95 -10.33 -0.01 13.38 16 19 O -0.59 -33.60 13.10 -148.98 -1.95 -35.55 16 20 C -0.55 -33.22 8.14 25.60 0.21 -33.01 16 21 H 0.04 2.61 7.78 -2.91 -0.02 2.58 16 22 C 0.03 1.52 5.28 84.66 0.45 1.97 16 23 N -0.91 -52.71 11.00 21.45 0.24 -52.48 16 24 Si 0.96 45.93 29.54 68.60 2.03 47.96 16 25 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 26 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 27 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 28 C 0.06 2.74 4.26 86.65 0.37 3.11 16 29 H 0.10 1.34 7.56 -2.38 -0.02 1.33 16 30 H 0.04 1.09 7.00 -2.39 -0.02 1.08 16 31 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.42 5.29 7.89 -92.71 -0.73 4.56 16 33 H 0.05 1.25 8.13 -2.38 -0.02 1.23 16 34 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.09 1.01 7.80 -2.38 -0.02 0.99 16 36 H 0.09 0.99 8.11 -2.39 -0.02 0.97 16 37 H 0.10 1.60 7.74 -2.91 -0.02 1.58 16 38 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.07 0.78 8.13 -2.39 -0.02 0.77 16 42 H 0.05 0.88 8.12 -2.39 -0.02 0.86 16 43 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 44 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 45 H 0.06 1.04 8.13 -2.39 -0.02 1.02 16 46 H 0.05 1.96 5.64 -2.39 -0.01 1.94 16 47 H 0.07 2.92 8.14 -2.38 -0.02 2.90 16 48 H 0.03 1.60 7.84 -2.39 -0.02 1.58 16 49 H 0.04 2.40 7.98 -2.39 -0.02 2.38 16 50 H 0.37 21.40 7.46 -74.06 -0.55 20.84 16 51 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 52 H 0.06 2.79 7.67 -2.39 -0.02 2.77 16 53 H 0.06 3.27 5.06 -2.39 -0.01 3.26 16 Total: -1.00 -73.68 404.28 -2.66 -76.34 By element: Atomic # 1 Polarization: 40.61 SS G_CDS: -0.39 Total: 40.22 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: 4.55 Total: -10.12 kcal Atomic # 7 Polarization: -87.47 SS G_CDS: -6.86 Total: -94.33 kcal Atomic # 8 Polarization: -58.08 SS G_CDS: -1.99 Total: -60.07 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -73.68 -2.66 -76.34 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592148575.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.099 kcal (2) G-P(sol) polarization free energy of solvation -73.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds