Wall clock time and date at job start Tue Mar 31 2020 20:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09009 * 109.46505 * 2 1 4 4 C 1.50698 * 109.47690 * 239.99971 * 2 1 3 5 5 O 1.21275 * 120.00253 * 255.54329 * 4 2 1 6 6 N 1.34775 * 119.99694 * 75.53734 * 4 2 1 7 7 C 1.46507 * 120.00689 * 355.52844 * 6 4 2 8 8 C 1.46505 * 120.00006 * 175.52513 * 6 4 2 9 9 C 1.50706 * 109.46843 * 90.00070 * 8 6 4 10 10 H 1.07997 * 120.00178 * 0.02562 * 9 8 6 11 11 C 1.37879 * 119.99661 * 180.02562 * 9 8 6 12 12 N 1.31506 * 120.00076 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99719 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47057 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.47032 * 119.99664 * 13 11 9 16 16 H 1.48496 * 109.47185 * 239.99920 * 13 11 9 17 17 N 1.46897 * 109.47379 * 119.99540 * 2 1 3 18 18 C 1.47016 * 110.99686 * 58.63998 * 17 2 1 19 19 C 1.53098 * 109.26034 * 177.60940 * 18 17 2 20 20 O 1.43103 * 109.28260 * 56.84452 * 19 18 17 21 21 C 1.43011 * 113.69397 * 301.36690 * 20 19 18 22 22 C 1.53003 * 109.50355 * 298.68712 * 21 20 19 23 23 C 1.52994 * 117.49954 * 250.08688 * 22 21 20 24 24 C 1.53002 * 117.49607 * 181.42513 * 22 21 20 25 25 C 1.52997 * 109.50976 * 178.60194 * 21 20 19 26 26 C 1.53005 * 117.49766 * 8.83112 * 25 21 20 27 27 C 1.52999 * 117.49735 * 300.17216 * 25 21 20 28 28 C 1.47015 * 110.99912 * 295.00779 * 17 2 1 29 29 H 1.09008 * 109.46725 * 185.90472 * 1 2 3 30 30 H 1.09000 * 109.47605 * 305.90616 * 1 2 3 31 31 H 1.09003 * 109.47203 * 65.91285 * 1 2 3 32 32 H 1.08999 * 109.46912 * 92.39930 * 7 6 4 33 33 H 1.08992 * 109.47476 * 212.41132 * 7 6 4 34 34 H 1.09004 * 109.46325 * 332.41252 * 7 6 4 35 35 H 1.09000 * 109.47497 * 209.99937 * 8 6 4 36 36 H 1.08995 * 109.46779 * 330.00459 * 8 6 4 37 37 H 0.97006 * 120.00060 * 180.02562 * 12 11 9 38 38 H 1.09006 * 109.50832 * 297.53910 * 18 17 2 39 39 H 1.08994 * 109.50667 * 57.62876 * 18 17 2 40 40 H 1.08997 * 109.51203 * 176.78149 * 19 18 17 41 41 H 1.09002 * 109.50381 * 296.87692 * 19 18 17 42 42 H 1.08998 * 115.54963 * 35.75964 * 22 21 20 43 43 H 1.09002 * 117.49653 * 359.97438 * 23 22 21 44 44 H 1.08997 * 117.49948 * 145.02045 * 23 22 21 45 45 H 1.09004 * 117.49760 * 214.97937 * 24 22 21 46 46 H 1.08996 * 117.50412 * 359.97438 * 24 22 21 47 47 H 1.09000 * 115.55348 * 154.50258 * 25 21 20 48 48 H 1.08999 * 117.49656 * 359.97438 * 26 25 21 49 49 H 1.08997 * 117.49564 * 145.02689 * 26 25 21 50 50 H 1.09001 * 117.50156 * 214.97924 * 27 25 21 51 51 H 1.09001 * 117.50158 * 359.97438 * 27 25 21 52 52 H 1.08998 * 109.51235 * 62.45565 * 28 17 2 53 53 H 1.08998 * 109.54102 * 302.34336 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.4818 -1.8333 -1.1413 6 7 1.9823 -0.0978 -2.4298 7 6 1.3505 1.2182 -2.5546 8 6 2.5595 -0.7478 -3.6091 9 6 1.5093 -1.5952 -4.2801 10 1 0.5116 -1.6442 -3.8696 11 6 1.8223 -2.3078 -5.4182 12 7 3.0370 -2.2477 -5.9184 13 14 0.5204 -3.3575 -6.2504 14 1 -0.7551 -3.2539 -5.4969 15 1 0.3134 -2.8793 -7.6410 16 1 0.9675 -4.7733 -6.2752 17 7 2.0197 -0.6924 1.1994 18 6 1.5219 -2.0748 1.2499 19 6 2.1027 -2.7761 2.4806 20 8 1.7583 -2.0334 3.6543 21 6 2.2279 -0.6827 3.6380 22 6 3.7558 -0.6740 3.5583 23 6 4.5254 -0.2157 4.7986 24 6 4.4558 0.6865 3.5639 25 6 1.7790 0.0298 4.9154 26 6 1.1405 -0.8237 6.0132 27 6 0.2751 0.1249 5.1799 28 6 1.6483 0.0399 2.4190 29 1 -0.3633 -1.0223 0.1057 30 1 -0.3634 0.6027 0.8324 31 1 -0.3634 0.4194 -0.9382 32 1 2.1047 1.9960 -2.4349 33 1 0.8888 1.3078 -3.5378 34 1 0.5882 1.3297 -1.7835 35 1 2.9133 0.0118 -4.3061 36 1 3.3946 -1.3783 -3.3040 37 1 3.2571 -2.7487 -6.7194 38 1 0.4337 -2.0677 1.3148 39 1 1.8293 -2.6054 0.3488 40 1 1.6917 -3.7830 2.5537 41 1 3.1875 -2.8314 2.3898 42 1 4.1996 -1.4658 2.9548 43 1 3.9431 0.0801 5.6713 44 1 5.4756 -0.7057 5.0109 45 1 5.3603 0.7895 2.9644 46 1 3.8279 1.5753 3.6239 47 1 2.3991 0.8700 5.2278 48 1 1.0400 -1.8926 5.8251 49 1 1.3403 -0.5446 7.0477 50 1 -0.0943 1.0276 5.6666 51 1 -0.3946 -0.3196 4.4437 52 1 0.5623 0.0808 2.5026 53 1 2.0481 1.0528 2.3721 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595821339.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:33 Heat of formation + Delta-G solvation = -11.907580 kcal Electronic energy + Delta-G solvation = -31593.400739 eV Core-core repulsion = 27660.378180 eV Total energy + Delta-G solvation = -3933.022558 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.90736 -40.69811 -38.20948 -36.94715 -36.74283 -36.51147 -34.76671 -32.14473 -31.58211 -29.60904 -27.97094 -27.35568 -26.00313 -25.42139 -24.11628 -23.41446 -23.25641 -22.85078 -21.79679 -19.96973 -19.29015 -18.68244 -18.03263 -17.77226 -17.49433 -16.99778 -16.61035 -16.38477 -16.13783 -15.91392 -15.59458 -15.39814 -15.16124 -14.85484 -14.67125 -14.16669 -14.10930 -14.01466 -13.83168 -13.56966 -13.53617 -13.27209 -13.05899 -13.02299 -12.75409 -12.58507 -12.38950 -12.32796 -12.23577 -12.19657 -12.01511 -11.91935 -11.66174 -11.61241 -11.24018 -11.22925 -11.08150 -10.69821 -10.65917 -10.55013 -10.03833 -9.41027 -9.19375 -8.22952 -6.37525 1.34644 1.37010 1.48524 1.82918 2.19818 2.39603 2.58951 2.88575 3.02862 3.06449 3.13002 3.59609 3.65649 3.76253 3.90129 3.97723 4.03385 4.08559 4.15484 4.17423 4.19823 4.25403 4.30685 4.37074 4.43018 4.51688 4.58872 4.64344 4.68643 4.71336 4.76433 4.82294 4.84994 4.89883 4.91150 4.99154 5.00120 5.09088 5.11415 5.13173 5.20620 5.23298 5.30086 5.32743 5.36937 5.42819 5.57713 5.84809 5.91714 6.05993 6.07048 6.28015 6.70313 6.81541 7.28796 7.52737 8.84064 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.019492 B = 0.002918 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.149845 B = 9592.165952 C = 9707.606217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.077 3.923 3 H 0.126 0.874 4 C 0.504 3.496 5 O -0.575 6.575 6 N -0.609 5.609 7 C 0.068 3.932 8 C 0.263 3.737 9 C -0.537 4.537 10 H 0.052 0.948 11 C 0.007 3.993 12 N -0.929 5.929 13 Si 0.966 3.034 14 H -0.268 1.268 15 H -0.269 1.269 16 H -0.282 1.282 17 N -0.518 5.518 18 C 0.000 4.000 19 C 0.071 3.929 20 O -0.379 6.379 21 C 0.184 3.816 22 C -0.175 4.175 23 C -0.170 4.170 24 C -0.163 4.163 25 C -0.150 4.150 26 C -0.163 4.163 27 C -0.169 4.169 28 C 0.039 3.961 29 H 0.047 0.953 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.098 0.902 35 H 0.023 0.977 36 H -0.004 1.004 37 H 0.267 0.733 38 H 0.036 0.964 39 H 0.096 0.904 40 H 0.104 0.896 41 H 0.050 0.950 42 H 0.083 0.917 43 H 0.114 0.886 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.108 0.892 47 H 0.135 0.865 48 H 0.086 0.914 49 H 0.108 0.892 50 H 0.113 0.887 51 H 0.081 0.919 52 H 0.050 0.950 53 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.900 10.882 23.781 26.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.034 4.034 3 H 0.144 0.856 4 C 0.292 3.708 5 O -0.455 6.455 6 N -0.340 5.340 7 C -0.074 4.074 8 C 0.141 3.859 9 C -0.576 4.576 10 H 0.070 0.930 11 C -0.192 4.192 12 N -0.569 5.569 13 Si 0.791 3.209 14 H -0.192 1.192 15 H -0.194 1.194 16 H -0.208 1.208 17 N -0.242 5.242 18 C -0.128 4.128 19 C -0.006 4.006 20 O -0.298 6.298 21 C 0.144 3.856 22 C -0.193 4.193 23 C -0.207 4.207 24 C -0.200 4.200 25 C -0.168 4.168 26 C -0.200 4.200 27 C -0.206 4.206 28 C -0.088 4.088 29 H 0.066 0.934 30 H 0.113 0.887 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.117 0.883 35 H 0.041 0.959 36 H 0.014 0.986 37 H 0.076 0.924 38 H 0.054 0.946 39 H 0.114 0.886 40 H 0.122 0.878 41 H 0.068 0.932 42 H 0.101 0.899 43 H 0.132 0.868 44 H 0.108 0.892 45 H 0.106 0.894 46 H 0.127 0.873 47 H 0.153 0.847 48 H 0.104 0.896 49 H 0.126 0.874 50 H 0.131 0.869 51 H 0.100 0.900 52 H 0.068 0.932 53 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.142 10.170 23.784 26.197 hybrid contribution -0.772 -1.015 -1.491 1.961 sum -4.914 9.156 22.294 24.596 Atomic orbital electron populations 1.22475 0.93976 1.02848 1.04593 1.21602 0.95160 0.98857 0.87805 0.85639 1.21068 0.78477 0.86113 0.85103 1.90473 1.48373 1.20901 1.85792 1.48129 1.57282 1.20445 1.08169 1.22151 0.98514 0.82735 1.03968 1.18714 0.93026 0.91976 0.82177 1.21697 0.97425 1.28375 1.10080 0.93018 1.25845 0.97752 0.97823 0.97764 1.70056 1.20691 1.43138 1.22996 0.85387 0.78911 0.78163 0.78457 1.19185 1.19405 1.20830 1.62092 1.59212 1.01865 1.01054 1.23198 0.97319 0.90900 1.01364 1.22593 0.99452 0.95105 0.83409 1.87970 1.77822 1.23936 1.40063 1.20379 0.90334 0.81750 0.93135 1.22505 0.94107 0.99794 1.02932 1.23184 1.01640 1.03330 0.92556 1.22907 1.02313 0.93602 1.01134 1.22305 0.96754 1.02366 0.95384 1.22855 1.03331 0.97785 0.95984 1.22984 0.92252 1.02205 1.03169 1.22795 0.98972 0.98562 0.88467 0.93375 0.88660 0.90104 0.91148 0.91530 0.88345 0.95948 0.98632 0.92443 0.94628 0.88600 0.87815 0.93216 0.89897 0.86827 0.89219 0.89446 0.87333 0.84738 0.89569 0.87350 0.86886 0.90037 0.93220 0.88368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.33 8.12 71.98 0.58 -3.74 16 2 C 0.08 2.23 1.94 44.17 0.09 2.31 16 3 H 0.13 2.94 7.59 -2.38 -0.02 2.92 16 4 C 0.50 20.93 6.83 87.66 0.60 21.52 16 5 O -0.58 -29.48 13.05 -3.01 -0.04 -29.52 16 6 N -0.61 -25.77 2.86 -851.12 -2.43 -28.21 16 7 C 0.07 2.01 9.87 127.77 1.26 3.27 16 8 C 0.26 14.27 5.14 85.63 0.44 14.71 16 9 C -0.54 -31.12 9.39 25.60 0.24 -30.88 16 10 H 0.05 2.98 7.81 -2.91 -0.02 2.95 16 11 C 0.01 0.40 5.46 84.66 0.46 0.87 16 12 N -0.93 -56.64 13.29 21.45 0.28 -56.36 16 13 Si 0.97 45.29 29.54 68.60 2.03 47.32 16 14 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 15 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 16 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 17 N -0.52 -14.89 4.28 -874.36 -3.75 -18.64 16 18 C 0.00 0.00 4.80 86.31 0.41 0.41 16 19 C 0.07 2.00 6.70 72.01 0.48 2.49 16 20 O -0.38 -9.73 8.65 -148.98 -1.29 -11.02 16 21 C 0.18 3.90 0.77 -10.76 -0.01 3.89 16 22 C -0.17 -3.89 4.79 -10.79 -0.05 -3.94 16 23 C -0.17 -2.91 9.59 30.62 0.29 -2.62 16 24 C -0.16 -2.91 9.30 30.62 0.28 -2.62 16 25 C -0.15 -2.37 3.81 -10.79 -0.04 -2.41 16 26 C -0.16 -2.55 9.88 30.62 0.30 -2.25 16 27 C -0.17 -2.45 9.64 30.62 0.30 -2.16 16 28 C 0.04 0.85 3.79 86.32 0.33 1.18 16 29 H 0.05 1.36 6.12 -2.38 -0.01 1.34 16 30 H 0.09 1.69 6.88 -2.39 -0.02 1.67 16 31 H 0.08 1.86 5.65 -2.39 -0.01 1.85 16 32 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.07 2.06 8.09 -2.39 -0.02 2.04 16 34 H 0.10 2.21 4.27 -2.39 -0.01 2.20 16 35 H 0.02 1.24 8.07 -2.39 -0.02 1.22 16 36 H 0.00 -0.28 7.49 -2.39 -0.02 -0.30 16 37 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16 38 H 0.04 1.10 6.29 -2.38 -0.01 1.09 16 39 H 0.10 3.93 4.92 -2.95 -0.01 3.92 16 40 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 41 H 0.05 1.50 6.23 -2.39 -0.01 1.49 16 42 H 0.08 2.34 6.22 -2.39 -0.01 2.33 16 43 H 0.11 1.59 5.93 -2.39 -0.01 1.57 16 44 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 46 H 0.11 1.55 7.38 -2.39 -0.02 1.54 16 47 H 0.14 1.66 5.96 -2.39 -0.01 1.65 16 48 H 0.09 1.72 7.07 -2.39 -0.02 1.70 16 49 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 50 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 51 H 0.08 1.42 7.59 -2.39 -0.02 1.40 16 52 H 0.05 1.03 5.74 -2.39 -0.01 1.02 16 53 H 0.10 1.79 7.29 -2.39 -0.02 1.78 16 Total: -1.00 -73.48 392.57 1.69 -71.79 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: 0.91 Total: 24.61 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: 5.97 Total: 0.03 kcal Atomic # 7 Polarization: -97.31 SS G_CDS: -5.89 Total: -103.20 kcal Atomic # 8 Polarization: -39.21 SS G_CDS: -1.33 Total: -40.54 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -73.48 1.69 -71.79 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595821339.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.880 kcal (2) G-P(sol) polarization free energy of solvation -73.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds