Wall clock time and date at job start Tue Mar 31 2020 19:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46650 * 2 1 4 4 C 1.52996 * 109.46965 * 120.00633 * 2 1 3 5 5 C 1.50707 * 109.46587 * 185.00011 * 4 2 1 6 6 O 1.21279 * 120.00334 * 359.97438 * 5 4 2 7 7 N 1.34785 * 119.99668 * 179.97438 * 5 4 2 8 8 C 1.46924 * 120.62790 * 0.02562 * 7 5 4 9 9 C 1.53197 * 108.77305 * 126.37107 * 8 7 5 10 10 C 1.53028 * 109.31631 * 54.62912 * 9 8 7 11 11 C 1.53039 * 109.54202 * 298.63716 * 10 9 8 12 12 H 1.08998 * 109.49764 * 301.38345 * 11 10 9 13 13 C 1.50698 * 109.50224 * 181.31423 * 11 10 9 14 14 H 1.08003 * 119.99715 * 275.04753 * 13 11 10 15 15 C 1.37876 * 120.00186 * 95.04334 * 13 11 10 16 16 N 1.31507 * 120.00101 * 186.21470 * 15 13 11 17 17 Si 1.86805 * 119.99663 * 6.20790 * 15 13 11 18 18 H 1.48494 * 109.46654 * 84.77157 * 17 15 13 19 19 H 1.48498 * 109.46752 * 204.76847 * 17 15 13 20 20 H 1.48494 * 109.47141 * 324.77268 * 17 15 13 21 21 C 1.46924 * 120.62868 * 179.71959 * 7 5 4 22 22 N 1.46500 * 109.47096 * 240.00583 * 2 1 3 23 23 C 1.34780 * 120.00195 * 84.99592 * 22 2 1 24 24 O 1.21279 * 119.99944 * 0.02562 * 23 22 2 25 25 C 1.50698 * 119.99915 * 179.97438 * 23 22 2 26 26 C 1.54260 * 110.03704 * 297.17084 * 25 23 22 27 27 C 1.54887 * 104.19936 * 217.10883 * 26 25 23 28 28 C 1.54891 * 102.74877 * 37.93791 * 27 26 25 29 29 C 1.53880 * 110.02987 * 180.02562 * 25 23 22 30 30 H 1.08997 * 109.47167 * 299.99299 * 1 2 3 31 31 H 1.09002 * 109.47429 * 59.99206 * 1 2 3 32 32 H 1.09000 * 109.47278 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46990 * 304.99396 * 4 2 1 34 34 H 1.08996 * 109.47376 * 64.99990 * 4 2 1 35 35 H 1.09002 * 109.58838 * 246.15337 * 8 7 5 36 36 H 1.09001 * 109.59249 * 6.44018 * 8 7 5 37 37 H 1.08995 * 109.49909 * 174.58977 * 9 8 7 38 38 H 1.09008 * 109.49390 * 294.67927 * 9 8 7 39 39 H 1.09000 * 109.45881 * 58.65539 * 10 9 8 40 40 H 1.09004 * 109.46528 * 178.62897 * 10 9 8 41 41 H 0.97004 * 120.00281 * 180.02562 * 16 15 13 42 42 H 1.09003 * 109.58464 * 353.42078 * 21 7 5 43 43 H 1.09000 * 109.58232 * 113.84785 * 21 7 5 44 44 H 0.97000 * 120.00040 * 265.00047 * 22 2 1 45 45 H 1.09001 * 110.01563 * 58.61465 * 25 23 22 46 46 H 1.09010 * 110.48432 * 335.78515 * 26 25 23 47 47 H 1.08999 * 110.48884 * 98.42485 * 26 25 23 48 48 H 1.09001 * 110.75244 * 279.62884 * 27 26 25 49 49 H 1.09001 * 110.91689 * 156.33077 * 27 26 25 50 50 H 1.08999 * 110.48864 * 203.38464 * 28 27 26 51 51 H 1.09003 * 110.60016 * 80.79513 * 28 27 26 52 52 H 1.08999 * 110.03079 * 238.57357 * 29 25 23 53 53 H 1.09001 * 110.03235 * 359.95221 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5419 -0.6150 1.3125 6 8 4.1450 -0.0211 0.4440 7 7 4.2149 -1.1798 2.3346 8 6 3.4983 -1.9029 3.3940 9 6 4.1017 -3.3045 3.5293 10 6 5.6101 -3.1862 3.7587 11 6 6.2581 -2.4954 2.5566 12 1 6.0524 -3.0691 1.6529 13 6 7.7475 -2.4083 2.7690 14 1 8.1652 -1.5885 3.3345 15 6 8.5768 -3.3752 2.2414 16 7 9.8603 -3.3683 2.5278 17 14 7.8771 -4.6952 1.1199 18 1 7.8180 -4.1815 -0.2721 19 1 8.7476 -5.8974 1.1674 20 1 6.5097 -5.0558 1.5729 21 6 5.6796 -1.0899 2.4070 22 7 2.0183 -0.6905 -1.1962 23 6 2.1470 -0.0181 -2.3572 24 8 1.8589 1.1588 -2.4115 25 6 2.6499 -0.7283 -3.5875 26 6 4.0915 -1.2267 -3.3579 27 6 4.7859 -1.0254 -4.7278 28 6 4.1809 0.3112 -5.2244 29 6 2.7072 0.2497 -4.7742 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5140 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6054 -0.2619 2.1369 34 1 1.7516 -1.7716 1.2054 35 1 3.6033 -1.3673 4.3375 36 1 2.4427 -1.9809 3.1336 37 1 3.6442 -3.8175 4.3752 38 1 3.9159 -3.8703 2.6163 39 1 5.7957 -2.5993 4.6582 40 1 6.0383 -4.1813 3.8796 41 1 10.4438 -4.0483 2.1563 42 1 6.0632 -0.6337 1.4944 43 1 5.9665 -0.4864 3.2682 44 1 2.2490 -1.6317 -1.1528 45 1 1.9973 -1.5680 -3.8265 46 1 4.5836 -0.6303 -2.5895 47 1 4.0912 -2.2811 -3.0817 48 1 4.5378 -1.8387 -5.4097 49 1 5.8658 -0.9397 -4.6078 50 1 4.2456 0.3790 -6.3104 51 1 4.6867 1.1574 -4.7594 52 1 2.0829 -0.1156 -5.5896 53 1 2.3705 1.2378 -4.4604 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597911631.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:09 Heat of formation + Delta-G solvation = -125.775704 kcal Electronic energy + Delta-G solvation = -30903.426084 eV Core-core repulsion = 26965.465833 eV Total energy + Delta-G solvation = -3937.960251 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.50332 -40.82984 -38.70237 -38.04385 -36.58482 -35.27684 -33.59066 -32.79063 -32.14671 -29.97284 -29.56589 -29.15659 -26.97370 -26.00052 -23.84329 -23.19183 -22.13129 -21.61644 -21.22301 -20.55693 -19.90027 -18.94729 -18.40393 -18.01537 -17.40817 -16.77810 -16.53461 -16.50435 -15.96750 -15.88542 -15.44337 -15.17835 -15.01765 -14.69774 -14.58769 -14.46499 -14.28219 -14.14366 -13.83364 -13.74278 -13.34706 -13.01440 -13.00040 -12.92803 -12.80673 -12.68503 -12.49780 -12.26623 -12.06743 -12.00331 -11.94570 -11.89468 -11.80873 -11.71822 -11.53385 -11.44912 -11.36985 -11.06638 -10.71265 -10.69693 -10.60903 -10.01150 -9.48479 -8.32581 -6.36142 1.30148 1.32606 1.42583 1.69564 1.74462 2.12474 2.30525 2.31396 3.04306 3.50399 3.57424 3.62168 3.68906 3.80828 4.06006 4.16449 4.23380 4.24578 4.26142 4.36309 4.42236 4.46425 4.49484 4.53407 4.59191 4.62943 4.65157 4.67808 4.74111 4.74397 4.84215 4.85495 4.92197 4.97152 5.01958 5.03114 5.09299 5.14307 5.18668 5.21327 5.27533 5.33795 5.35376 5.41649 5.44758 5.53928 5.63202 5.71061 5.78695 6.26650 6.56739 6.64154 6.70806 7.28706 7.31334 7.33261 8.84536 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.010196 B = 0.003922 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2745.548038 B = 7137.375680 C = 9133.100445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.154 3.846 3 H 0.052 0.948 4 C -0.136 4.136 5 C 0.496 3.504 6 O -0.586 6.586 7 N -0.611 5.611 8 C 0.105 3.895 9 C -0.131 4.131 10 C -0.111 4.111 11 C 0.009 3.991 12 H 0.026 0.974 13 C -0.519 4.519 14 H 0.030 0.970 15 C 0.014 3.986 16 N -0.949 5.949 17 Si 0.941 3.059 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.237 1.237 21 C 0.135 3.865 22 N -0.707 5.707 23 C 0.518 3.482 24 O -0.588 6.588 25 C -0.108 4.108 26 C -0.115 4.115 27 C -0.121 4.121 28 C -0.124 4.124 29 C -0.117 4.117 30 H 0.086 0.914 31 H 0.040 0.960 32 H 0.082 0.918 33 H 0.141 0.859 34 H 0.135 0.865 35 H 0.078 0.922 36 H 0.126 0.874 37 H 0.101 0.899 38 H 0.060 0.940 39 H 0.051 0.949 40 H 0.040 0.960 41 H 0.266 0.734 42 H 0.048 0.952 43 H 0.050 0.950 44 H 0.407 0.593 45 H 0.127 0.873 46 H 0.037 0.963 47 H 0.085 0.915 48 H 0.092 0.908 49 H 0.060 0.940 50 H 0.086 0.914 51 H 0.043 0.957 52 H 0.090 0.910 53 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.463 -1.761 -7.076 25.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.049 3.951 3 H 0.070 0.930 4 C -0.176 4.176 5 C 0.286 3.714 6 O -0.466 6.466 7 N -0.343 5.343 8 C -0.016 4.016 9 C -0.169 4.169 10 C -0.149 4.149 11 C -0.011 4.011 12 H 0.044 0.956 13 C -0.557 4.557 14 H 0.049 0.951 15 C -0.183 4.183 16 N -0.589 5.589 17 Si 0.765 3.235 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.161 1.161 21 C 0.012 3.988 22 N -0.357 5.357 23 C 0.306 3.694 24 O -0.469 6.469 25 C -0.129 4.129 26 C -0.153 4.153 27 C -0.158 4.158 28 C -0.162 4.162 29 C -0.155 4.155 30 H 0.105 0.895 31 H 0.060 0.940 32 H 0.101 0.899 33 H 0.159 0.841 34 H 0.152 0.848 35 H 0.096 0.904 36 H 0.144 0.856 37 H 0.119 0.881 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.242 0.758 45 H 0.145 0.855 46 H 0.056 0.944 47 H 0.104 0.896 48 H 0.111 0.889 49 H 0.079 0.921 50 H 0.104 0.896 51 H 0.062 0.938 52 H 0.108 0.892 53 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -24.205 -0.699 -7.537 25.361 hybrid contribution 1.431 -0.476 -0.154 1.516 sum -22.774 -1.176 -7.690 24.066 Atomic orbital electron populations 1.22086 0.92350 1.03686 1.02704 1.20704 0.94977 0.96180 0.83274 0.93011 1.22144 0.89287 1.05608 1.00535 1.21476 0.91678 0.77866 0.80351 1.90728 1.71511 1.44398 1.39995 1.48441 1.06902 1.53921 1.25046 1.22064 0.97397 0.91707 0.90463 1.21979 0.94841 0.97065 1.02990 1.21683 0.95298 0.99558 0.98379 1.19298 0.93223 0.93083 0.95465 0.95562 1.21212 0.91615 1.09371 1.33516 0.95121 1.25909 0.94859 1.00013 0.97550 1.70056 1.05806 1.36786 1.46206 0.85823 0.79836 0.78463 0.79331 1.20238 1.21257 1.16061 1.21286 0.79194 0.98173 1.00135 1.45863 1.66506 1.14070 1.09234 1.20962 0.75831 0.86789 0.85818 1.90608 1.52529 1.17943 1.85777 1.22004 0.98383 0.99884 0.92593 1.22321 0.93343 1.01438 0.98242 1.22510 0.99422 0.98132 0.95786 1.22351 0.95168 0.97208 1.01452 1.22133 0.97514 0.99468 0.96337 0.89503 0.94034 0.89865 0.84103 0.84763 0.90381 0.85634 0.88091 0.92131 0.93003 0.94141 0.92537 0.93295 0.93190 0.75802 0.85472 0.94401 0.89617 0.88912 0.92133 0.89563 0.93842 0.89156 0.92083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.48 71.98 0.68 -1.49 16 2 C 0.15 3.24 2.14 44.99 0.10 3.34 16 3 H 0.05 1.56 7.39 -2.39 -0.02 1.55 16 4 C -0.14 -2.21 3.59 29.85 0.11 -2.10 16 5 C 0.50 14.53 7.56 87.66 0.66 15.19 16 6 O -0.59 -23.57 14.77 -3.03 -0.04 -23.62 16 7 N -0.61 -18.24 2.98 -819.77 -2.44 -20.68 16 8 C 0.10 2.06 6.35 86.36 0.55 2.61 16 9 C -0.13 -3.06 6.08 30.67 0.19 -2.88 16 10 C -0.11 -4.00 5.15 30.62 0.16 -3.84 16 11 C 0.01 0.40 1.92 -11.62 -0.02 0.38 16 12 H 0.03 1.20 5.24 -2.39 -0.01 1.18 16 13 C -0.52 -29.28 8.86 25.60 0.23 -29.06 16 14 H 0.03 1.93 8.06 -2.91 -0.02 1.91 16 15 C 0.01 0.80 5.47 84.66 0.46 1.27 16 16 N -0.95 -59.33 13.96 21.45 0.30 -59.03 16 17 Si 0.94 43.87 27.03 68.60 1.85 45.73 16 18 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 19 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 20 H -0.24 -9.87 6.77 99.48 0.67 -9.20 16 21 C 0.14 5.55 5.67 86.21 0.49 6.04 16 22 N -0.71 -16.07 4.16 -442.54 -1.84 -17.92 16 23 C 0.52 14.42 6.96 87.66 0.61 15.03 16 24 O -0.59 -21.23 14.87 -3.03 -0.05 -21.27 16 25 C -0.11 -2.31 3.30 -10.82 -0.04 -2.35 16 26 C -0.12 -2.74 6.31 31.67 0.20 -2.54 16 27 C -0.12 -2.50 6.91 31.89 0.22 -2.28 16 28 C -0.12 -2.64 6.83 31.65 0.22 -2.42 16 29 C -0.12 -2.53 6.40 31.30 0.20 -2.33 16 30 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.04 0.80 8.14 -2.39 -0.02 0.79 16 32 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.14 1.38 7.94 -2.39 -0.02 1.36 16 34 H 0.13 1.24 7.69 -2.39 -0.02 1.22 16 35 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.13 1.26 5.93 -2.39 -0.01 1.25 16 37 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 39 H 0.05 1.87 8.14 -2.39 -0.02 1.86 16 40 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 41 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 42 H 0.05 2.33 7.01 -2.39 -0.02 2.32 16 43 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.41 7.42 8.60 -92.71 -0.80 6.62 16 45 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.04 1.21 7.85 -2.38 -0.02 1.19 16 47 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 48 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 49 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 50 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 51 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 52 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 53 H 0.06 1.69 6.39 -2.39 -0.02 1.68 16 Total: -1.00 -83.02 408.39 2.84 -80.18 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: 0.05 Total: 24.04 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: 5.01 Total: -7.42 kcal Atomic # 7 Polarization: -93.65 SS G_CDS: -3.99 Total: -97.63 kcal Atomic # 8 Polarization: -44.80 SS G_CDS: -0.09 Total: -44.89 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.85 Total: 45.73 kcal Total: -83.02 2.84 -80.18 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911631.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.598 kcal (2) G-P(sol) polarization free energy of solvation -83.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds