Wall clock time and date at job start Tue Mar 31 2020 19:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46979 * 2 1 4 4 C 1.52999 * 109.47284 * 240.00442 * 2 1 3 5 5 C 1.50698 * 109.47141 * 175.00155 * 4 2 1 6 6 O 1.21276 * 120.00108 * 359.97438 * 5 4 2 7 7 N 1.34781 * 119.99667 * 179.97438 * 5 4 2 8 8 C 1.46924 * 120.63270 * 359.97438 * 7 5 4 9 9 C 1.53194 * 108.77524 * 126.36685 * 8 7 5 10 10 C 1.53045 * 109.31363 * 54.63591 * 9 8 7 11 11 C 1.53042 * 109.53519 * 298.63920 * 10 9 8 12 12 H 1.08998 * 109.49449 * 301.37097 * 11 10 9 13 13 C 1.50702 * 109.49502 * 181.31275 * 11 10 9 14 14 H 1.07998 * 120.00267 * 239.99185 * 13 11 10 15 15 C 1.37877 * 119.99996 * 59.99886 * 13 11 10 16 16 N 1.31524 * 120.00066 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 120.00181 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.46858 * 59.99889 * 17 15 13 19 19 H 1.48504 * 109.47308 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47053 * 299.99906 * 17 15 13 21 21 C 1.46923 * 120.62931 * 179.71819 * 7 5 4 22 22 N 1.46499 * 109.47288 * 119.99801 * 2 1 3 23 23 C 1.34777 * 120.00199 * 275.00460 * 22 2 1 24 24 O 1.21283 * 119.99750 * 359.97438 * 23 22 2 25 25 C 1.50702 * 119.99928 * 180.27479 * 23 22 2 26 26 C 1.54267 * 110.03146 * 296.88866 * 25 23 22 27 27 C 1.54883 * 104.19698 * 217.10957 * 26 25 23 28 28 C 1.54887 * 102.75125 * 37.93620 * 27 26 25 29 29 C 1.53866 * 110.03136 * 179.72321 * 25 23 22 30 30 H 1.08993 * 109.47268 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47495 * 300.00247 * 1 2 3 32 32 H 1.09007 * 109.47320 * 60.00143 * 1 2 3 33 33 H 1.09006 * 109.46798 * 294.99777 * 4 2 1 34 34 H 1.08995 * 109.47322 * 54.99237 * 4 2 1 35 35 H 1.08998 * 109.58752 * 246.15452 * 8 7 5 36 36 H 1.09000 * 109.58629 * 6.44497 * 8 7 5 37 37 H 1.08997 * 109.50013 * 174.58962 * 9 8 7 38 38 H 1.09001 * 109.50190 * 294.68636 * 9 8 7 39 39 H 1.09000 * 109.45858 * 58.65077 * 10 9 8 40 40 H 1.08996 * 109.46370 * 178.62776 * 10 9 8 41 41 H 0.96999 * 119.99888 * 180.02562 * 16 15 13 42 42 H 1.08998 * 109.58704 * 353.41941 * 21 7 5 43 43 H 1.09000 * 109.58920 * 113.84272 * 21 7 5 44 44 H 0.97000 * 119.99484 * 94.99557 * 22 2 1 45 45 H 1.09003 * 110.01769 * 58.32789 * 25 23 22 46 46 H 1.09008 * 110.48552 * 335.78661 * 26 25 23 47 47 H 1.09003 * 110.48850 * 98.42446 * 26 25 23 48 48 H 1.09009 * 110.75431 * 279.62785 * 27 26 25 49 49 H 1.09001 * 110.91657 * 156.33284 * 27 26 25 50 50 H 1.08997 * 110.48935 * 203.37990 * 28 27 26 51 51 H 1.09003 * 110.59575 * 80.79533 * 28 27 26 52 52 H 1.09002 * 110.03256 * 238.56639 * 29 25 23 53 53 H 1.09007 * 110.03460 * 359.95128 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5419 -0.6148 -1.3127 6 8 4.1449 -0.0204 -0.4445 7 7 4.2149 -1.1804 -2.3343 8 6 3.4984 -1.9042 -3.3933 9 6 3.9090 -1.3254 -4.7509 10 6 5.4334 -1.3698 -4.8799 11 6 6.0653 -0.5147 -3.7791 12 1 5.7040 0.5103 -3.8622 13 6 7.5649 -0.5330 -3.9265 14 1 8.1819 -0.9100 -3.1242 15 6 8.1494 -0.0683 -5.0855 16 7 7.3982 0.3905 -6.0628 17 14 10.0084 -0.0903 -5.2680 18 1 10.5005 -1.4866 -5.1529 19 1 10.3820 0.4588 -6.5962 20 1 10.6204 0.7399 -4.1998 21 6 5.6786 -1.0800 -2.4132 22 7 2.0183 -0.6906 1.1962 23 6 2.1470 -0.0182 2.3572 24 8 1.8589 1.1586 2.4115 25 6 2.6553 -0.7271 3.5861 26 6 1.6768 -1.8487 3.9917 27 6 1.6903 -1.8228 5.5403 28 6 1.7747 -0.3088 5.8561 29 6 2.7174 0.2519 4.7714 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.7516 -1.7715 -1.2056 34 1 1.6053 -0.2617 -2.1369 35 1 3.7585 -2.9620 -3.3532 36 1 2.4238 -1.7866 -3.2536 37 1 3.4590 -1.9156 -5.5492 38 1 3.5677 -0.2929 -4.8245 39 1 5.7763 -2.3997 -4.7815 40 1 5.7268 -0.9810 -5.8550 41 1 7.8094 0.7170 -6.8783 42 1 6.0422 -0.4166 -1.6285 43 1 6.1198 -2.0692 -2.2917 44 1 2.2490 -1.6317 1.1526 45 1 3.6438 -1.1444 3.3941 46 1 0.6761 -1.6366 3.6153 47 1 2.0276 -2.8127 3.6232 48 1 2.5636 -2.3475 5.9279 49 1 0.7732 -2.2513 5.9446 50 1 2.1968 -0.1490 6.8483 51 1 0.7905 0.1538 5.7824 52 1 3.7360 0.3092 5.1554 53 1 2.3808 1.2401 4.4577 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597911632.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:14 Heat of formation + Delta-G solvation = -124.309101 kcal Electronic energy + Delta-G solvation = -30202.698825 eV Core-core repulsion = 26264.802171 eV Total energy + Delta-G solvation = -3937.896654 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.48688 -40.80721 -38.64152 -37.99468 -36.59110 -35.37431 -33.21794 -32.73278 -31.96946 -29.90430 -29.51204 -29.07351 -26.96830 -25.87558 -23.84643 -23.29416 -22.16824 -21.53956 -21.32509 -20.51494 -19.71267 -18.58914 -18.40191 -17.86108 -17.37109 -16.79812 -16.55338 -16.51784 -15.99778 -15.69907 -15.58113 -15.10652 -14.96575 -14.64794 -14.43130 -14.40910 -14.20839 -13.85328 -13.76114 -13.58365 -13.47105 -12.98082 -12.86574 -12.85359 -12.70025 -12.66370 -12.58661 -12.23405 -12.05556 -12.01468 -11.93932 -11.85253 -11.80708 -11.64037 -11.58392 -11.42736 -11.25402 -10.86995 -10.69070 -10.64922 -10.43161 -10.00883 -9.44224 -8.12597 -6.27960 1.38972 1.40792 1.47960 1.70740 1.74310 2.15461 2.30075 2.42117 3.13658 3.53101 3.57437 3.66093 3.69680 3.83172 4.12696 4.21987 4.25765 4.29256 4.33921 4.45303 4.47289 4.53562 4.55853 4.57959 4.62733 4.65925 4.67381 4.69247 4.81462 4.82321 4.87072 4.90128 4.98518 5.01023 5.07809 5.10256 5.14059 5.23887 5.24340 5.29492 5.33030 5.37774 5.46353 5.49237 5.59136 5.60483 5.62869 5.92896 6.14533 6.33567 6.59210 6.66365 6.82052 7.30436 7.35443 7.40246 8.90620 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016381 B = 0.002488 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.857335 B =11250.154379 C =12243.543750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.155 3.845 3 H 0.047 0.953 4 C -0.136 4.136 5 C 0.497 3.503 6 O -0.590 6.590 7 N -0.608 5.608 8 C 0.110 3.890 9 C -0.129 4.129 10 C -0.107 4.107 11 C 0.040 3.960 12 H -0.019 1.019 13 C -0.539 4.539 14 H 0.050 0.950 15 C 0.016 3.984 16 N -0.913 5.913 17 Si 0.954 3.046 18 H -0.266 1.266 19 H -0.282 1.282 20 H -0.278 1.278 21 C 0.133 3.867 22 N -0.703 5.703 23 C 0.518 3.482 24 O -0.591 6.591 25 C -0.114 4.114 26 C -0.106 4.106 27 C -0.118 4.118 28 C -0.121 4.121 29 C -0.125 4.125 30 H 0.086 0.914 31 H 0.041 0.959 32 H 0.082 0.918 33 H 0.141 0.859 34 H 0.131 0.869 35 H 0.084 0.916 36 H 0.121 0.879 37 H 0.090 0.910 38 H 0.042 0.958 39 H 0.037 0.963 40 H 0.059 0.941 41 H 0.262 0.738 42 H 0.045 0.955 43 H 0.060 0.940 44 H 0.409 0.591 45 H 0.101 0.899 46 H 0.067 0.933 47 H 0.094 0.906 48 H 0.079 0.921 49 H 0.083 0.917 50 H 0.077 0.923 51 H 0.059 0.941 52 H 0.069 0.931 53 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.244 -11.441 14.697 26.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.050 3.950 3 H 0.065 0.935 4 C -0.175 4.175 5 C 0.287 3.713 6 O -0.470 6.470 7 N -0.340 5.340 8 C -0.012 4.012 9 C -0.167 4.167 10 C -0.145 4.145 11 C 0.021 3.979 12 H -0.001 1.001 13 C -0.578 4.578 14 H 0.069 0.931 15 C -0.183 4.183 16 N -0.552 5.552 17 Si 0.779 3.221 18 H -0.191 1.191 19 H -0.207 1.207 20 H -0.204 1.204 21 C 0.010 3.990 22 N -0.353 5.353 23 C 0.305 3.695 24 O -0.472 6.472 25 C -0.135 4.135 26 C -0.144 4.144 27 C -0.156 4.156 28 C -0.159 4.159 29 C -0.163 4.163 30 H 0.105 0.895 31 H 0.060 0.940 32 H 0.101 0.899 33 H 0.159 0.841 34 H 0.149 0.851 35 H 0.102 0.898 36 H 0.139 0.861 37 H 0.109 0.891 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.078 0.922 44 H 0.245 0.755 45 H 0.119 0.881 46 H 0.086 0.914 47 H 0.112 0.888 48 H 0.098 0.902 49 H 0.101 0.899 50 H 0.095 0.905 51 H 0.077 0.923 52 H 0.087 0.913 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.125 -10.240 14.967 25.640 hybrid contribution 1.902 0.542 -0.619 2.072 sum -16.223 -9.697 14.348 23.730 Atomic orbital electron populations 1.22082 0.92379 1.03821 1.02532 1.20650 0.94963 0.96029 0.83393 0.93502 1.22122 0.89333 1.05869 1.00198 1.21441 0.91644 0.77591 0.80635 1.90700 1.71547 1.44197 1.40590 1.48397 1.07307 1.53945 1.24366 1.22022 0.97821 0.96071 0.85271 1.21922 0.96417 1.00617 0.97772 1.21423 0.93798 0.97918 1.01343 1.18799 0.94367 0.93382 0.91328 1.00082 1.21424 0.92810 1.42219 1.01330 0.93126 1.25692 1.02367 0.94622 0.95595 1.70003 1.36399 1.42449 1.06331 0.85683 0.80538 0.78759 0.77115 1.19087 1.20721 1.20360 1.21358 0.79481 0.99744 0.98376 1.45792 1.66558 1.14091 1.08885 1.21008 0.76149 0.86641 0.85657 1.90619 1.52728 1.18170 1.85678 1.22007 1.01574 0.97657 0.92253 1.22350 0.98000 0.96959 0.97086 1.22504 1.03111 0.95501 0.94444 1.22349 0.98938 0.96395 0.98190 1.22168 1.00724 0.98914 0.94452 0.89492 0.93995 0.89944 0.84126 0.85088 0.89817 0.86076 0.89145 0.93877 0.94378 0.92200 0.92934 0.93600 0.92171 0.75539 0.88138 0.91427 0.88781 0.90248 0.89863 0.90480 0.92267 0.91273 0.92409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.48 71.98 0.68 -1.77 16 2 C 0.15 3.56 2.13 44.99 0.10 3.66 16 3 H 0.05 1.55 7.39 -2.39 -0.02 1.54 16 4 C -0.14 -2.55 3.59 29.85 0.11 -2.44 16 5 C 0.50 15.86 7.56 87.66 0.66 16.52 16 6 O -0.59 -24.90 14.77 -3.02 -0.04 -24.94 16 7 N -0.61 -20.17 2.98 -819.69 -2.44 -22.61 16 8 C 0.11 2.64 6.34 86.36 0.55 3.19 16 9 C -0.13 -4.06 6.08 30.67 0.19 -3.88 16 10 C -0.11 -4.68 4.96 30.62 0.15 -4.53 16 11 C 0.04 2.04 2.24 -11.59 -0.03 2.01 16 12 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 13 C -0.54 -30.11 8.56 25.60 0.22 -29.89 16 14 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 15 C 0.02 0.91 5.30 84.65 0.45 1.36 16 16 N -0.91 -52.55 11.31 21.45 0.24 -52.31 16 17 Si 0.95 43.92 29.54 68.60 2.03 45.95 16 18 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 19 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 20 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 21 C 0.13 5.76 5.63 86.23 0.49 6.24 16 22 N -0.70 -15.95 4.17 -442.54 -1.84 -17.80 16 23 C 0.52 14.45 6.96 87.66 0.61 15.06 16 24 O -0.59 -21.98 14.87 -3.04 -0.05 -22.03 16 25 C -0.11 -2.36 3.30 -10.82 -0.04 -2.40 16 26 C -0.11 -1.42 6.31 31.67 0.20 -1.22 16 27 C -0.12 -1.39 6.91 31.88 0.22 -1.17 16 28 C -0.12 -1.92 6.83 31.67 0.22 -1.71 16 29 C -0.12 -2.73 6.40 31.32 0.20 -2.53 16 30 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.08 1.10 8.14 -2.38 -0.02 1.09 16 33 H 0.14 1.42 7.94 -2.38 -0.02 1.40 16 34 H 0.13 1.93 7.70 -2.39 -0.02 1.91 16 35 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.12 1.76 5.93 -2.39 -0.01 1.74 16 37 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.06 3.06 6.04 -2.39 -0.01 3.05 16 41 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 42 H 0.05 2.24 7.01 -2.39 -0.02 2.22 16 43 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 44 H 0.41 6.91 8.60 -92.71 -0.80 6.11 16 45 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 46 H 0.07 0.95 7.85 -2.38 -0.02 0.93 16 47 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 48 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 49 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 50 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 51 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 52 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 53 H 0.06 1.65 6.39 -2.38 -0.02 1.63 16 Total: -1.00 -79.32 408.71 2.95 -76.37 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: 0.09 Total: 20.85 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: 4.97 Total: -3.49 kcal Atomic # 7 Polarization: -88.67 SS G_CDS: -4.04 Total: -92.71 kcal Atomic # 8 Polarization: -46.88 SS G_CDS: -0.09 Total: -46.97 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -79.32 2.95 -76.37 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911632.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.941 kcal (2) G-P(sol) polarization free energy of solvation -79.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds