Wall clock time and date at job start Tue Mar 31 2020 20:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47251 * 2 1 4 4 N 1.46502 * 109.46973 * 120.00167 * 2 1 3 5 5 C 1.34779 * 119.99825 * 274.99597 * 4 2 1 6 6 O 1.21288 * 119.99783 * 0.02562 * 5 4 2 7 7 C 1.50694 * 120.00247 * 179.97438 * 5 4 2 8 8 C 1.53004 * 109.47517 * 300.00506 * 7 5 4 9 9 C 1.52998 * 109.47215 * 179.97438 * 8 7 5 10 10 C 1.52999 * 109.47070 * 60.00073 * 9 8 7 11 11 C 1.53000 * 109.46946 * 299.99677 * 10 9 8 12 12 C 1.52995 * 109.47503 * 180.02562 * 7 5 4 13 13 C 1.50697 * 109.47200 * 239.99851 * 2 1 3 14 14 O 1.21286 * 119.99807 * 265.20110 * 13 2 1 15 15 N 1.34783 * 120.00062 * 85.19539 * 13 2 1 16 16 C 1.46935 * 120.60148 * 354.84566 * 15 13 2 17 17 C 1.53196 * 108.76687 * 233.53232 * 16 15 13 18 18 C 1.53040 * 109.33829 * 305.41577 * 17 16 15 19 19 C 1.53034 * 109.54242 * 61.35160 * 18 17 16 20 20 H 1.09001 * 109.49650 * 58.61693 * 19 18 17 21 21 C 1.50692 * 109.50188 * 178.68467 * 19 18 17 22 22 H 1.07998 * 120.00634 * 119.99667 * 21 19 18 23 23 C 1.37881 * 119.99820 * 299.99913 * 21 19 18 24 24 N 1.31514 * 120.00190 * 0.02562 * 23 21 19 25 25 Si 1.86801 * 120.00018 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47448 * 89.99751 * 25 23 21 27 27 H 1.48506 * 109.47174 * 210.00335 * 25 23 21 28 28 H 1.48508 * 109.47082 * 329.99815 * 25 23 21 29 29 C 1.46923 * 120.62929 * 174.82061 * 15 13 2 30 30 H 1.09000 * 109.47628 * 185.01970 * 1 2 3 31 31 H 1.09001 * 109.47306 * 305.01591 * 1 2 3 32 32 H 1.08997 * 109.47310 * 65.01350 * 1 2 3 33 33 H 0.96992 * 120.00110 * 94.99889 * 4 2 1 34 34 H 1.09001 * 109.46657 * 60.00212 * 7 5 4 35 35 H 1.09000 * 109.47035 * 300.00087 * 8 7 5 36 36 H 1.09004 * 109.46969 * 59.99538 * 8 7 5 37 37 H 1.08995 * 109.47290 * 299.99438 * 9 8 7 38 38 H 1.09002 * 109.46483 * 180.02562 * 9 8 7 39 39 H 1.09007 * 109.46854 * 179.97438 * 10 9 8 40 40 H 1.09001 * 109.47435 * 59.99924 * 10 9 8 41 41 H 1.08994 * 109.46989 * 299.99762 * 11 10 9 42 42 H 1.09004 * 109.46873 * 180.02562 * 11 10 9 43 43 H 1.09002 * 109.47321 * 299.99942 * 12 7 5 44 44 H 1.09001 * 109.47192 * 60.00293 * 12 7 5 45 45 H 1.08996 * 109.56132 * 113.76455 * 16 15 13 46 46 H 1.09002 * 109.61310 * 353.33127 * 16 15 13 47 47 H 1.09002 * 109.49292 * 185.44898 * 17 16 15 48 48 H 1.08994 * 109.49868 * 65.38565 * 17 16 15 49 49 H 1.09000 * 109.45844 * 181.37590 * 18 17 16 50 50 H 1.09002 * 109.45780 * 301.33137 * 18 17 16 51 51 H 0.96997 * 120.00476 * 179.97438 * 24 23 21 52 52 H 1.08998 * 109.58827 * 6.64820 * 29 15 13 53 53 H 1.09004 * 109.70050 * 246.29246 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1471 -0.0183 2.3571 6 8 1.8582 1.1585 2.4117 7 6 2.6488 -0.7287 3.5877 8 6 1.7042 -1.8823 3.9315 9 6 2.2141 -2.6040 5.1805 10 6 2.2660 -1.6211 6.3519 11 6 3.2106 -0.4676 6.0082 12 6 2.6998 0.2542 4.7590 13 6 2.0323 -0.7104 -1.2304 14 8 2.3173 -1.8881 -1.1768 15 7 2.1648 -0.0371 -2.3905 16 6 1.7182 1.3584 -2.5006 17 6 0.7648 1.4780 -3.6937 18 6 1.4531 0.9367 -4.9488 19 6 1.7931 -0.5419 -4.7487 20 1 0.8801 -1.1004 -4.5421 21 6 2.4416 -1.0824 -5.9970 22 1 3.4410 -1.4895 -5.9536 23 6 1.7591 -1.0571 -7.1948 24 7 0.5423 -0.5608 -7.2479 25 14 2.5627 -1.7276 -8.7420 26 1 2.2470 -3.1723 -8.8776 27 1 2.0458 -0.9948 -9.9257 28 1 4.0342 -1.5487 -8.6529 29 6 2.7588 -0.6845 -3.5681 30 1 -0.3634 -1.0237 0.0899 31 1 -0.3634 0.5897 0.8416 32 1 -0.3634 0.4341 -0.9314 33 1 2.2489 -1.6317 1.1526 34 1 3.6479 -1.1213 3.3986 35 1 0.7051 -1.4898 4.1206 36 1 1.6675 -2.5828 3.0971 37 1 3.2130 -2.9966 4.9910 38 1 1.5413 -3.4261 5.4251 39 1 2.6288 -2.1354 7.2419 40 1 1.2670 -1.2285 6.5415 41 1 4.2096 -0.8602 5.8188 42 1 3.2480 0.2324 6.8429 43 1 3.3726 1.0763 4.5145 44 1 1.7005 0.6464 4.9481 45 1 2.5808 2.0064 -2.6557 46 1 1.1992 1.6496 -1.5874 47 1 0.5020 2.5249 -3.8457 48 1 -0.1387 0.9011 -3.4967 49 1 0.7854 1.0434 -5.8037 50 1 2.3692 1.4984 -5.1314 51 1 0.0623 -0.5427 -8.0906 52 1 2.9265 -1.7409 -3.3587 53 1 3.7070 -0.2053 -3.8117 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597911918.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:44 Heat of formation + Delta-G solvation = -125.664451 kcal Electronic energy + Delta-G solvation = -30213.542779 eV Core-core repulsion = 26275.587353 eV Total energy + Delta-G solvation = -3937.955427 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.81046 -40.83811 -38.74703 -38.32840 -36.15322 -35.39568 -33.29137 -32.74562 -31.96243 -31.61144 -30.80830 -27.21419 -26.70591 -25.37378 -24.04002 -23.44267 -23.28506 -21.69559 -21.33359 -20.64769 -19.88784 -18.90708 -18.28465 -17.82479 -17.28209 -16.68181 -16.48734 -16.36348 -16.00547 -15.63626 -15.18693 -15.11019 -15.04119 -14.98101 -14.68880 -14.61394 -14.23329 -14.12471 -13.74865 -13.62645 -13.36755 -13.31762 -13.23216 -13.06558 -12.89538 -12.80035 -12.63481 -12.58052 -12.21868 -12.02547 -11.98024 -11.85456 -11.63164 -11.54698 -11.34377 -11.29826 -11.00740 -10.93874 -10.76580 -10.66755 -10.43830 -10.25415 -9.56897 -8.11049 -6.25926 1.38540 1.40706 1.41993 1.51469 1.57589 1.74951 2.31487 2.43774 3.15743 3.27782 3.57936 3.74909 3.79747 3.92447 3.99757 4.04697 4.20875 4.25510 4.29068 4.32105 4.33246 4.46830 4.50591 4.53698 4.57176 4.60338 4.61298 4.70730 4.73295 4.77370 4.83293 4.94147 4.98214 5.05092 5.12414 5.13438 5.17865 5.20945 5.26538 5.27215 5.30137 5.38047 5.41781 5.44837 5.52108 5.57658 5.61048 5.92608 6.12510 6.33527 6.41812 6.43837 6.82982 7.01604 7.13928 7.42161 8.92547 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.026855 B = 0.002221 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.396991 B =12605.287579 C =13109.108479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.133 3.867 3 H 0.114 0.886 4 N -0.710 5.710 5 C 0.520 3.480 6 O -0.573 6.573 7 C -0.099 4.099 8 C -0.109 4.109 9 C -0.116 4.116 10 C -0.121 4.121 11 C -0.116 4.116 12 C -0.096 4.096 13 C 0.506 3.494 14 O -0.579 6.579 15 N -0.600 5.600 16 C 0.104 3.896 17 C -0.126 4.126 18 C -0.107 4.107 19 C 0.042 3.958 20 H -0.012 1.012 21 C -0.536 4.536 22 H 0.053 0.947 23 C 0.016 3.984 24 N -0.912 5.912 25 Si 0.954 3.046 26 H -0.280 1.280 27 H -0.281 1.281 28 H -0.267 1.267 29 C 0.130 3.870 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.413 0.587 34 H 0.111 0.889 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.059 0.941 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.084 0.916 46 H 0.106 0.894 47 H 0.090 0.910 48 H 0.048 0.952 49 H 0.063 0.937 50 H 0.038 0.962 51 H 0.261 0.739 52 H 0.058 0.942 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.316 2.050 25.095 25.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.024 3.976 3 H 0.132 0.868 4 N -0.364 5.364 5 C 0.308 3.692 6 O -0.452 6.452 7 C -0.121 4.121 8 C -0.147 4.147 9 C -0.153 4.153 10 C -0.159 4.159 11 C -0.153 4.153 12 C -0.134 4.134 13 C 0.294 3.706 14 O -0.460 6.460 15 N -0.331 5.331 16 C -0.018 4.018 17 C -0.164 4.164 18 C -0.145 4.145 19 C 0.023 3.977 20 H 0.006 0.994 21 C -0.575 4.575 22 H 0.071 0.929 23 C -0.183 4.183 24 N -0.551 5.551 25 Si 0.780 3.220 26 H -0.206 1.206 27 H -0.207 1.207 28 H -0.192 1.192 29 C 0.008 3.992 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.250 0.750 34 H 0.129 0.871 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.077 0.923 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.102 0.898 46 H 0.124 0.876 47 H 0.108 0.892 48 H 0.067 0.933 49 H 0.082 0.918 50 H 0.056 0.944 51 H 0.070 0.930 52 H 0.077 0.923 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.127 2.321 25.013 25.210 hybrid contribution 0.219 -0.868 -1.624 1.855 sum 2.346 1.454 23.388 23.551 Atomic orbital electron populations 1.22076 0.91579 1.03419 1.03998 1.20746 0.96641 0.97524 0.82645 0.86790 1.45915 1.67087 1.15019 1.08355 1.21266 0.76296 0.86845 0.84756 1.90672 1.51515 1.17426 1.85556 1.21397 1.01902 0.97328 0.91429 1.21542 0.98146 0.95600 0.99433 1.21527 1.02110 0.97917 0.93754 1.21576 0.99805 0.96278 0.98225 1.21552 0.99494 0.97626 0.96651 1.21322 1.01797 0.96752 0.93538 1.21004 0.77473 0.86891 0.85253 1.90634 1.52952 1.16965 1.85426 1.48295 1.59687 1.14458 1.10625 1.22074 0.99045 0.80578 1.00073 1.21900 0.97845 1.01762 0.94881 1.21438 0.99322 0.96091 0.97648 1.18866 0.93171 0.94133 0.91569 0.99367 1.21427 1.01516 1.40432 0.94119 0.92854 1.25683 0.95371 0.95426 1.01792 1.69999 1.12194 1.46126 1.26826 0.85620 0.79015 0.78244 0.79152 1.20573 1.20695 1.19171 1.21620 0.96319 0.96988 0.84321 0.91893 0.90055 0.90355 0.74956 0.87079 0.91951 0.91036 0.91009 0.90824 0.90766 0.92264 0.91163 0.91057 0.92361 0.92427 0.89779 0.87592 0.89178 0.93325 0.91809 0.94364 0.92953 0.92335 0.91734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 9.16 71.98 0.66 -2.93 16 2 C 0.13 3.49 2.11 44.24 0.09 3.58 16 3 H 0.11 2.89 6.18 -2.39 -0.01 2.88 16 4 N -0.71 -16.79 4.95 -446.10 -2.21 -19.00 16 5 C 0.52 12.00 7.12 87.65 0.62 12.63 16 6 O -0.57 -16.72 15.65 -3.06 -0.05 -16.77 16 7 C -0.10 -1.63 2.53 -11.54 -0.03 -1.66 16 8 C -0.11 -1.50 5.10 30.59 0.16 -1.34 16 9 C -0.12 -1.21 5.92 30.59 0.18 -1.03 16 10 C -0.12 -1.23 5.92 30.59 0.18 -1.05 16 11 C -0.12 -1.31 5.93 30.61 0.18 -1.13 16 12 C -0.10 -1.55 4.49 30.61 0.14 -1.42 16 13 C 0.51 17.09 6.90 87.66 0.60 17.70 16 14 O -0.58 -23.15 15.42 -3.05 -0.05 -23.20 16 15 N -0.60 -21.05 2.97 -818.86 -2.43 -23.48 16 16 C 0.10 2.94 5.91 86.36 0.51 3.45 16 17 C -0.13 -4.17 6.08 30.67 0.19 -3.99 16 18 C -0.11 -4.71 4.96 30.62 0.15 -4.56 16 19 C 0.04 2.07 2.25 -11.47 -0.03 2.04 16 20 H -0.01 -0.68 8.14 -2.39 -0.02 -0.69 16 21 C -0.54 -29.26 8.56 25.60 0.22 -29.04 16 22 H 0.05 2.87 7.74 -2.91 -0.02 2.84 16 23 C 0.02 0.90 5.30 84.66 0.45 1.35 16 24 N -0.91 -51.70 11.31 21.45 0.24 -51.46 16 25 Si 0.95 43.24 29.54 68.60 2.03 45.26 16 26 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 27 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 28 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 29 C 0.13 5.53 5.66 86.36 0.49 6.02 16 30 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.08 1.81 7.17 -2.39 -0.02 1.79 16 33 H 0.41 9.39 7.20 -92.71 -0.67 8.72 16 34 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.07 0.96 7.57 -2.38 -0.02 0.94 16 37 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 40 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 43 H 0.06 1.06 8.10 -2.39 -0.02 1.05 16 44 H 0.06 1.07 8.10 -2.39 -0.02 1.05 16 45 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 46 H 0.11 2.37 4.88 -2.39 -0.01 2.36 16 47 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 48 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 49 H 0.06 3.25 6.04 -2.39 -0.01 3.24 16 50 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 51 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 52 H 0.06 2.72 7.00 -2.39 -0.02 2.70 16 53 H 0.06 2.64 8.14 -2.38 -0.02 2.62 16 Total: -1.00 -66.80 403.63 2.52 -64.28 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: 0.22 Total: 25.74 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: 4.77 Total: -1.37 kcal Atomic # 7 Polarization: -89.54 SS G_CDS: -4.40 Total: -93.94 kcal Atomic # 8 Polarization: -39.87 SS G_CDS: -0.09 Total: -39.97 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -66.80 2.52 -64.28 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911918.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.388 kcal (2) G-P(sol) polarization free energy of solvation -66.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds