Wall clock time and date at job start Tue Mar 31 2020 20:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.47247 * 2 1 4 4 N 1.46506 * 109.46985 * 119.99216 * 2 1 3 5 5 C 1.34774 * 120.00110 * 275.00504 * 4 2 1 6 6 O 1.21277 * 120.00259 * 359.97438 * 5 4 2 7 7 C 1.50704 * 119.99842 * 180.02562 * 5 4 2 8 8 C 1.53001 * 109.46786 * 299.99794 * 7 5 4 9 9 C 1.52999 * 109.47216 * 180.02562 * 8 7 5 10 10 C 1.52996 * 109.47389 * 59.99504 * 9 8 7 11 11 C 1.53006 * 109.47034 * 300.00414 * 10 9 8 12 12 C 1.52993 * 109.47228 * 59.99863 * 11 10 9 13 13 C 1.50699 * 109.47368 * 239.99382 * 2 1 3 14 14 O 1.21277 * 120.00243 * 264.93556 * 13 2 1 15 15 N 1.34775 * 119.99472 * 84.93431 * 13 2 1 16 16 C 1.46922 * 120.63457 * 354.81584 * 15 13 2 17 17 C 1.53192 * 108.77739 * 126.38782 * 16 15 13 18 18 C 1.53039 * 109.31499 * 54.63470 * 17 16 15 19 19 C 1.53041 * 109.53580 * 298.63537 * 18 17 16 20 20 H 1.09002 * 109.49948 * 301.38187 * 19 18 17 21 21 C 1.50704 * 109.49775 * 181.31628 * 19 18 17 22 22 H 1.08005 * 119.99962 * 240.06259 * 21 19 18 23 23 C 1.37875 * 119.99753 * 59.78845 * 21 19 18 24 24 N 1.31508 * 120.00257 * 0.27897 * 23 21 19 25 25 Si 1.86804 * 119.99705 * 180.27656 * 23 21 19 26 26 H 1.48496 * 109.47283 * 60.00181 * 25 23 21 27 27 H 1.48498 * 109.46911 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47145 * 299.99785 * 25 23 21 29 29 C 1.46935 * 120.59929 * 174.78767 * 15 13 2 30 30 H 1.09005 * 109.47207 * 305.00815 * 1 2 3 31 31 H 1.08999 * 109.47102 * 65.00487 * 1 2 3 32 32 H 1.08994 * 109.47120 * 185.00557 * 1 2 3 33 33 H 0.97000 * 119.99549 * 95.00265 * 4 2 1 34 34 H 1.08997 * 109.47487 * 59.99098 * 7 5 4 35 35 H 1.09008 * 109.47199 * 300.00005 * 8 7 5 36 36 H 1.09001 * 109.47408 * 60.00024 * 8 7 5 37 37 H 1.09011 * 109.46698 * 299.99296 * 9 8 7 38 38 H 1.09000 * 109.47538 * 179.97438 * 9 8 7 39 39 H 1.08997 * 109.47165 * 180.02562 * 10 9 8 40 40 H 1.08995 * 109.47015 * 60.00369 * 10 9 8 41 41 H 1.09005 * 109.46672 * 299.99693 * 11 10 9 42 42 H 1.08994 * 109.46789 * 180.02562 * 11 10 9 43 43 H 1.09000 * 109.47396 * 179.97438 * 12 11 10 44 44 H 1.09003 * 109.47338 * 59.99759 * 12 11 10 45 45 H 1.08999 * 109.59058 * 6.59787 * 16 15 13 46 46 H 1.09004 * 109.58601 * 246.17395 * 16 15 13 47 47 H 1.08996 * 109.50000 * 294.68192 * 17 16 15 48 48 H 1.09004 * 109.52675 * 174.60298 * 17 16 15 49 49 H 1.08998 * 109.46014 * 178.61702 * 18 17 16 50 50 H 1.08997 * 109.46377 * 58.65089 * 18 17 16 51 51 H 0.97003 * 119.99927 * 180.02562 * 24 23 21 52 52 H 1.08999 * 109.56252 * 113.81082 * 29 15 13 53 53 H 1.08996 * 109.61701 * 353.38143 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -0.0180 2.3572 6 8 1.8589 1.1588 2.4115 7 6 2.6498 -0.7282 3.5876 8 6 1.7063 -1.8825 3.9316 9 6 2.2163 -2.6031 5.1811 10 6 2.2673 -1.6197 6.3521 11 6 3.2109 -0.4655 6.0080 12 6 2.7008 0.2552 4.7586 13 6 2.0324 -0.7105 -1.2304 14 8 2.3220 -1.8869 -1.1755 15 7 2.1599 -0.0385 -2.3917 16 6 1.7075 1.3548 -2.5039 17 6 2.8643 2.2076 -3.0343 18 6 3.3774 1.6060 -4.3445 19 6 3.8991 0.1903 -4.0879 20 1 4.6960 0.2253 -3.3450 21 6 4.4338 -0.3892 -5.3722 22 1 4.0023 -1.2924 -5.7780 23 6 5.4701 0.2366 -6.0320 24 7 5.9956 1.3362 -5.5379 25 14 6.1277 -0.4775 -7.6280 26 1 5.0377 -0.5250 -8.6353 27 1 7.2329 0.3757 -8.1337 28 1 6.6359 -1.8513 -7.3833 29 6 2.7546 -0.6859 -3.5690 30 1 -0.3634 0.5896 0.8418 31 1 -0.3633 0.4342 -0.9314 32 1 -0.3633 -1.0237 0.0897 33 1 2.2490 -1.6316 1.1528 34 1 3.6491 -1.1201 3.3981 35 1 0.7068 -1.4906 4.1211 36 1 1.6697 -2.5829 3.0972 37 1 3.2158 -2.9950 4.9919 38 1 1.5439 -3.4252 5.4265 39 1 2.6311 -2.1331 7.2421 40 1 1.2679 -1.2280 6.5412 41 1 4.2103 -0.8574 5.8189 42 1 3.2475 0.2348 6.8424 43 1 3.3727 1.0778 4.5137 44 1 1.7013 0.6470 4.9477 45 1 1.4037 1.7206 -1.5231 46 1 0.8656 1.4112 -3.1940 47 1 3.6705 2.2236 -2.3010 48 1 2.5150 3.2246 -3.2131 49 1 4.1844 2.2248 -4.7368 50 1 2.5644 1.5674 -5.0695 51 1 6.7244 1.7767 -6.0023 52 1 1.9980 -0.7965 -4.3459 53 1 3.1419 -1.6661 -3.2911 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597911920.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:54 Heat of formation + Delta-G solvation = -125.478459 kcal Electronic energy + Delta-G solvation = -30312.046292 eV Core-core repulsion = 26374.098930 eV Total energy + Delta-G solvation = -3937.947361 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.81221 -40.84312 -38.75706 -38.34175 -36.15100 -35.40313 -33.31401 -32.72371 -31.97145 -31.62251 -30.81020 -27.21053 -26.70804 -25.38042 -24.04745 -23.45036 -23.32038 -21.66755 -21.26754 -20.66600 -20.01009 -18.87259 -18.29429 -17.84566 -17.25587 -16.68614 -16.58896 -16.30083 -16.07379 -15.60144 -15.18979 -15.10014 -15.02468 -14.88919 -14.78650 -14.59960 -14.26791 -14.11153 -13.73119 -13.64412 -13.35534 -13.33657 -13.24457 -13.07391 -12.86180 -12.74622 -12.65497 -12.62404 -12.22680 -12.03187 -11.98335 -11.86577 -11.65025 -11.55575 -11.35289 -11.31814 -11.01546 -10.94413 -10.77481 -10.67353 -10.44006 -10.24951 -9.57469 -8.11594 -6.27047 1.35028 1.41817 1.42706 1.50258 1.58100 1.80157 2.28425 2.43568 3.15175 3.28258 3.56799 3.73831 3.78920 3.88988 4.01006 4.08136 4.19808 4.24601 4.28338 4.30970 4.33124 4.45719 4.51542 4.55252 4.55953 4.60551 4.61553 4.71890 4.73946 4.78178 4.82337 4.93478 4.97562 5.08052 5.10836 5.12735 5.17124 5.20496 5.25792 5.26088 5.28506 5.37472 5.40864 5.44101 5.50343 5.56855 5.59887 5.90814 6.11306 6.32111 6.41640 6.42771 6.82025 7.01289 7.13246 7.41374 8.91942 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.018888 B = 0.002382 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.085473 B =11750.851204 C =12037.057392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.129 3.871 3 H 0.106 0.894 4 N -0.711 5.711 5 C 0.519 3.481 6 O -0.573 6.573 7 C -0.101 4.101 8 C -0.107 4.107 9 C -0.116 4.116 10 C -0.120 4.120 11 C -0.117 4.117 12 C -0.096 4.096 13 C 0.506 3.494 14 O -0.579 6.579 15 N -0.600 5.600 16 C 0.105 3.895 17 C -0.129 4.129 18 C -0.106 4.106 19 C 0.041 3.959 20 H -0.015 1.015 21 C -0.537 4.537 22 H 0.055 0.945 23 C 0.016 3.984 24 N -0.914 5.914 25 Si 0.955 3.045 26 H -0.267 1.267 27 H -0.284 1.284 28 H -0.275 1.275 29 C 0.131 3.869 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.413 0.587 34 H 0.107 0.893 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.054 0.946 44 H 0.059 0.941 45 H 0.105 0.895 46 H 0.093 0.907 47 H 0.040 0.960 48 H 0.090 0.910 49 H 0.062 0.938 50 H 0.041 0.959 51 H 0.261 0.739 52 H 0.067 0.933 53 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.568 -2.830 20.669 23.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.020 3.980 3 H 0.124 0.876 4 N -0.365 5.365 5 C 0.307 3.693 6 O -0.452 6.452 7 C -0.122 4.122 8 C -0.145 4.145 9 C -0.153 4.153 10 C -0.158 4.158 11 C -0.154 4.154 12 C -0.134 4.134 13 C 0.294 3.706 14 O -0.460 6.460 15 N -0.330 5.330 16 C -0.017 4.017 17 C -0.167 4.167 18 C -0.145 4.145 19 C 0.022 3.978 20 H 0.003 0.997 21 C -0.576 4.576 22 H 0.073 0.927 23 C -0.183 4.183 24 N -0.553 5.553 25 Si 0.781 3.219 26 H -0.192 1.192 27 H -0.210 1.210 28 H -0.201 1.201 29 C 0.009 3.991 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.086 0.914 33 H 0.250 0.750 34 H 0.125 0.875 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.123 0.877 46 H 0.111 0.889 47 H 0.059 0.941 48 H 0.108 0.892 49 H 0.081 0.919 50 H 0.060 0.940 51 H 0.070 0.930 52 H 0.085 0.915 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.490 -2.467 20.670 23.777 hybrid contribution 1.073 -0.535 -1.359 1.812 sum -10.417 -3.002 19.311 22.146 Atomic orbital electron populations 1.22055 0.90603 1.03676 1.04306 1.20814 0.97350 0.97182 0.82643 0.87617 1.45921 1.67161 1.15009 1.08382 1.21266 0.76296 0.86839 0.84861 1.90666 1.51581 1.17389 1.85614 1.21407 1.01837 0.97501 0.91483 1.21533 0.98125 0.95421 0.99426 1.21535 1.02068 0.97981 0.93763 1.21569 0.99810 0.96154 0.98243 1.21550 0.99494 0.97755 0.96615 1.21309 1.01835 0.96691 0.93576 1.20970 0.77576 0.86955 0.85079 1.90627 1.52858 1.17203 1.85271 1.48299 1.59323 1.14437 1.10982 1.22093 0.97189 0.79057 1.03332 1.21918 0.97470 0.99657 0.97642 1.21436 0.99391 0.98129 0.95495 1.18884 0.91494 0.93243 0.94224 0.99675 1.21401 1.17693 1.10231 1.08228 0.92676 1.25699 0.96583 0.95223 1.00781 1.70005 1.25640 1.19125 1.40541 0.85659 0.78071 0.78237 0.79980 1.19208 1.20975 1.20056 1.21621 0.95705 0.96250 0.85504 0.90418 0.89519 0.91362 0.74969 0.87528 0.91640 0.90914 0.91254 0.90534 0.90742 0.92026 0.91435 0.91031 0.92734 0.92173 0.87729 0.88923 0.94125 0.89205 0.91938 0.94028 0.92951 0.91514 0.92398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 9.24 71.98 0.67 -2.41 16 2 C 0.13 3.42 2.11 44.24 0.09 3.51 16 3 H 0.11 2.94 5.93 -2.38 -0.01 2.93 16 4 N -0.71 -17.75 4.95 -446.08 -2.21 -19.95 16 5 C 0.52 12.91 7.12 87.66 0.62 13.53 16 6 O -0.57 -17.84 15.64 -3.02 -0.05 -17.88 16 7 C -0.10 -1.83 2.53 -11.54 -0.03 -1.86 16 8 C -0.11 -1.52 5.10 30.59 0.16 -1.36 16 9 C -0.12 -1.28 5.92 30.59 0.18 -1.10 16 10 C -0.12 -1.30 5.92 30.60 0.18 -1.12 16 11 C -0.12 -1.50 5.92 30.59 0.18 -1.32 16 12 C -0.10 -1.72 4.49 30.59 0.14 -1.58 16 13 C 0.51 17.13 6.90 87.66 0.60 17.73 16 14 O -0.58 -22.97 15.44 -3.02 -0.05 -23.01 16 15 N -0.60 -21.02 2.97 -818.89 -2.43 -23.45 16 16 C 0.10 2.96 5.81 86.36 0.50 3.46 16 17 C -0.13 -4.41 6.08 30.67 0.19 -4.22 16 18 C -0.11 -4.74 4.96 30.62 0.15 -4.59 16 19 C 0.04 2.03 2.25 -11.46 -0.03 2.00 16 20 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 21 C -0.54 -29.33 8.57 25.60 0.22 -29.11 16 22 H 0.05 2.95 7.74 -2.91 -0.02 2.92 16 23 C 0.02 0.89 5.30 84.66 0.45 1.34 16 24 N -0.91 -52.27 11.31 21.45 0.24 -52.03 16 25 Si 0.96 43.25 29.54 68.60 2.03 45.28 16 26 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 27 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 28 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 29 C 0.13 5.59 5.64 86.36 0.49 6.07 16 30 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.09 1.56 7.40 -2.39 -0.02 1.54 16 32 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.41 9.85 7.20 -92.71 -0.67 9.19 16 34 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 36 H 0.07 0.99 7.56 -2.39 -0.02 0.97 16 37 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 38 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 42 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.05 1.13 8.10 -2.39 -0.02 1.11 16 44 H 0.06 1.18 8.10 -2.39 -0.02 1.16 16 45 H 0.10 2.37 5.14 -2.39 -0.01 2.35 16 46 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 47 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 48 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 49 H 0.06 3.23 6.03 -2.39 -0.01 3.21 16 50 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 51 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 52 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 53 H 0.06 2.68 7.04 -2.39 -0.02 2.67 16 Total: -1.00 -67.73 403.85 2.52 -65.21 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: 0.22 Total: 26.88 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: 4.76 Total: -1.04 kcal Atomic # 7 Polarization: -91.04 SS G_CDS: -4.40 Total: -95.43 kcal Atomic # 8 Polarization: -40.80 SS G_CDS: -0.09 Total: -40.90 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -67.73 2.52 -65.21 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911920.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.267 kcal (2) G-P(sol) polarization free energy of solvation -67.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds