Wall clock time and date at job start Tue Mar 31 2020 19:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47197 * 2 1 4 4 C 1.53007 * 109.46847 * 240.00323 * 2 1 3 5 5 C 1.50699 * 109.46890 * 65.00052 * 4 2 1 6 6 O 1.21283 * 120.00332 * 359.97438 * 5 4 2 7 7 N 1.34774 * 120.00386 * 179.97438 * 5 4 2 8 8 C 1.47161 * 120.98330 * 0.02562 * 7 5 4 9 9 C 1.53300 * 108.37118 * 129.38539 * 8 7 5 10 10 O 1.42968 * 109.22612 * 52.35397 * 9 8 7 11 11 C 1.42893 * 114.20887 * 297.50525 * 10 9 8 12 12 C 1.52990 * 109.55769 * 302.52586 * 11 10 9 13 13 C 1.53195 * 109.34738 * 300.95636 * 12 11 10 14 14 N 1.46932 * 108.77517 * 305.43150 * 13 12 11 15 15 C 1.36939 * 120.63776 * 233.64856 * 14 13 12 16 16 H 1.07994 * 120.00388 * 29.31573 * 15 14 13 17 17 C 1.38812 * 119.99894 * 209.31432 * 15 14 13 18 18 N 1.31629 * 119.99846 * 24.33934 * 17 15 14 19 19 Si 1.86794 * 120.00220 * 204.34404 * 17 15 14 20 20 H 1.48499 * 109.47166 * 180.02562 * 19 17 15 21 21 H 1.48505 * 109.47008 * 299.99540 * 19 17 15 22 22 H 1.48500 * 109.47268 * 59.99635 * 19 17 15 23 23 C 1.46925 * 118.71825 * 53.92877 * 14 13 12 24 24 C 1.52999 * 109.54877 * 182.22567 * 11 10 9 25 25 C 1.47149 * 120.99342 * 179.97438 * 7 5 4 26 26 C 1.52998 * 109.47163 * 120.00899 * 2 1 3 27 27 C 1.52996 * 117.49428 * 248.61955 * 26 2 1 28 28 C 1.53003 * 60.00159 * 252.50998 * 27 26 2 29 29 H 1.09004 * 109.47219 * 299.99673 * 1 2 3 30 30 H 1.09004 * 109.47287 * 59.99468 * 1 2 3 31 31 H 1.08997 * 109.47520 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47147 * 305.00214 * 4 2 1 33 33 H 1.08994 * 109.47253 * 184.99651 * 4 2 1 34 34 H 1.08994 * 109.68916 * 249.10678 * 8 7 5 35 35 H 1.09007 * 109.67928 * 9.67074 * 8 7 5 36 36 H 1.08998 * 109.51173 * 172.27788 * 9 8 7 37 37 H 1.09005 * 109.51524 * 292.38219 * 9 8 7 38 38 H 1.09006 * 109.48402 * 180.99735 * 12 11 10 39 39 H 1.08991 * 109.51177 * 60.93914 * 12 11 10 40 40 H 1.09000 * 109.58085 * 185.64434 * 13 12 11 41 41 H 1.08999 * 109.70030 * 65.29021 * 13 12 11 42 42 H 0.96998 * 119.99676 * 5.78285 * 18 17 15 43 43 H 1.09008 * 109.58706 * 65.84446 * 23 14 13 44 44 H 1.08998 * 109.59128 * 186.27686 * 23 14 13 45 45 H 1.08997 * 109.49447 * 178.99766 * 24 11 10 46 46 H 1.09001 * 109.49212 * 299.05162 * 24 11 10 47 47 H 1.09005 * 109.67843 * 110.76276 * 25 7 5 48 48 H 1.08996 * 109.70440 * 350.24439 * 25 7 5 49 49 H 1.08993 * 115.55176 * 34.32498 * 26 2 1 50 50 H 1.09003 * 117.49989 * 359.97438 * 27 26 2 51 51 H 1.08999 * 117.49920 * 145.02313 * 27 26 2 52 52 H 1.09001 * 117.49991 * 252.51243 * 28 27 26 53 53 H 1.08995 * 117.51732 * 107.47814 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6412 0.0572 -2.4766 6 8 1.0108 1.0871 -2.3632 7 7 1.9851 -0.3910 -3.7002 8 6 2.7493 -1.6381 -3.8630 9 6 2.0262 -2.5172 -4.8899 10 8 1.7917 -1.7575 -6.0781 11 6 0.9426 -0.6236 -5.8905 12 6 -0.4013 -1.0792 -5.3186 13 6 -1.0518 -2.0757 -6.2834 14 7 -1.1395 -1.4576 -7.6135 15 6 -2.3359 -1.3961 -8.2770 16 1 -3.2599 -1.3432 -7.7205 17 6 -2.3609 -1.4016 -9.6649 18 7 -1.3612 -1.9297 -10.3390 19 14 -3.8131 -0.6596 -10.5758 20 1 -3.5989 -0.7911 -12.0394 21 1 -5.0563 -1.3753 -10.1918 22 1 -3.9389 0.7767 -10.2204 23 6 0.0824 -0.9126 -8.2206 24 6 0.7194 0.0764 -7.2325 25 6 1.6067 0.3513 -4.9131 26 6 2.0400 -0.7214 1.2491 27 6 2.7419 0.1223 2.3150 28 6 3.5550 -0.8283 1.4341 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6053 -1.7197 -1.2953 33 1 3.1262 -0.7994 -1.2058 34 1 3.7540 -1.4094 -4.2183 35 1 2.8069 -2.1607 -2.9081 36 1 2.6443 -3.3830 -5.1274 37 1 1.0744 -2.8517 -4.4770 38 1 -1.0544 -0.2156 -5.1926 39 1 -0.2422 -1.5588 -4.3529 40 1 -2.0521 -2.3262 -5.9302 41 1 -0.4470 -2.9806 -6.3400 42 1 -0.6481 -2.3890 -9.8686 43 1 0.7795 -1.7239 -8.4304 44 1 -0.1689 -0.3954 -9.1466 45 1 0.0573 0.9307 -7.0915 46 1 1.6758 0.4188 -7.6276 47 1 2.4965 0.7819 -5.3725 48 1 0.9065 1.1455 -4.6544 49 1 1.4311 -1.5587 1.5900 50 1 2.8407 1.1913 2.1261 51 1 2.5948 -0.1597 3.3575 52 1 3.9428 -1.7357 1.8970 53 1 4.1883 -0.3850 0.6656 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949250899.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:25 Heat of formation + Delta-G solvation = -55.623221 kcal Electronic energy + Delta-G solvation = -31259.309047 eV Core-core repulsion = 27324.390836 eV Total energy + Delta-G solvation = -3934.918211 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.92874 -40.40242 -38.69668 -37.99285 -35.82407 -34.88851 -34.10529 -32.91194 -31.60068 -30.05479 -29.63450 -27.66221 -25.87213 -24.70575 -24.32306 -23.96066 -23.17641 -22.51345 -20.91785 -20.54451 -19.84427 -19.46009 -18.31352 -17.32155 -16.99674 -16.86880 -16.48897 -16.24416 -16.06207 -15.87041 -15.59406 -15.38527 -15.27488 -15.13209 -14.90001 -14.62945 -14.17255 -13.90221 -13.73192 -13.68792 -13.34315 -13.15085 -13.08108 -12.83393 -12.63265 -12.51160 -12.41402 -12.25555 -12.13452 -12.11057 -11.98556 -11.92552 -11.87025 -11.77812 -11.41544 -11.24643 -11.06729 -10.89337 -10.85129 -10.64498 -10.47620 -9.54826 -8.92797 -8.24934 -5.42497 1.57075 1.58491 1.64642 1.83807 1.84278 2.64049 2.73726 2.91944 3.21420 3.39580 3.48288 3.66352 3.71400 3.76792 3.82619 3.91699 3.98919 4.07449 4.15446 4.20046 4.26306 4.27960 4.30555 4.37463 4.48863 4.52401 4.57987 4.60506 4.61264 4.68750 4.70317 4.78312 4.78858 4.84160 4.85812 4.88662 4.94634 5.02064 5.03392 5.12756 5.15378 5.15957 5.19027 5.30587 5.31432 5.38837 5.44350 5.50900 5.82221 6.26960 6.34884 6.38679 7.05548 7.12730 7.76878 8.22766 8.98789 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.023613 B = 0.002651 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.520516 B =10559.371118 C =11046.071406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.040 4.040 3 H 0.058 0.942 4 C -0.125 4.125 5 C 0.509 3.491 6 O -0.578 6.578 7 N -0.614 5.614 8 C 0.077 3.923 9 C 0.033 3.967 10 O -0.381 6.381 11 C 0.128 3.872 12 C -0.135 4.135 13 C 0.155 3.845 14 N -0.616 5.616 15 C -0.358 4.358 16 H 0.046 0.954 17 C -0.074 4.074 18 N -0.939 5.939 19 Si 1.115 2.885 20 H -0.290 1.290 21 H -0.276 1.276 22 H -0.280 1.280 23 C 0.169 3.831 24 C -0.114 4.114 25 C 0.099 3.901 26 C -0.150 4.150 27 C -0.187 4.187 28 C -0.173 4.173 29 H 0.055 0.945 30 H 0.045 0.955 31 H 0.059 0.941 32 H 0.114 0.886 33 H 0.118 0.882 34 H 0.092 0.908 35 H 0.129 0.871 36 H 0.126 0.874 37 H 0.052 0.948 38 H 0.051 0.949 39 H 0.073 0.927 40 H 0.042 0.958 41 H 0.017 0.983 42 H 0.254 0.746 43 H 0.009 0.991 44 H 0.043 0.957 45 H 0.068 0.932 46 H 0.080 0.920 47 H 0.081 0.919 48 H 0.080 0.920 49 H 0.113 0.887 50 H 0.086 0.914 51 H 0.101 0.899 52 H 0.107 0.893 53 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.384 -0.233 23.933 27.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.059 4.059 3 H 0.076 0.924 4 C -0.165 4.165 5 C 0.300 3.700 6 O -0.457 6.457 7 N -0.347 5.347 8 C -0.045 4.045 9 C -0.044 4.044 10 O -0.300 6.300 11 C 0.087 3.913 12 C -0.174 4.174 13 C 0.030 3.970 14 N -0.340 5.340 15 C -0.488 4.488 16 H 0.064 0.936 17 C -0.270 4.270 18 N -0.581 5.581 19 Si 0.939 3.061 20 H -0.215 1.215 21 H -0.202 1.202 22 H -0.207 1.207 23 C 0.044 3.956 24 C -0.154 4.154 25 C -0.025 4.025 26 C -0.168 4.168 27 C -0.224 4.224 28 C -0.209 4.209 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.132 0.868 33 H 0.136 0.864 34 H 0.110 0.890 35 H 0.147 0.853 36 H 0.144 0.856 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.092 0.908 40 H 0.060 0.940 41 H 0.035 0.965 42 H 0.064 0.936 43 H 0.027 0.973 44 H 0.061 0.939 45 H 0.086 0.914 46 H 0.098 0.902 47 H 0.099 0.901 48 H 0.098 0.902 49 H 0.131 0.869 50 H 0.105 0.895 51 H 0.120 0.880 52 H 0.125 0.875 53 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 12.518 0.617 22.334 25.610 hybrid contribution 0.174 -0.320 1.313 1.363 sum 12.692 0.296 23.647 26.840 Atomic orbital electron populations 1.21876 0.95289 1.01760 1.01690 1.20375 0.95662 0.98125 0.91729 0.92392 1.21810 1.04391 1.00315 0.89946 1.21441 0.78056 0.85428 0.85079 1.90663 1.41656 1.26850 1.86579 1.48284 1.55584 1.25542 1.05310 1.22682 0.95557 0.84062 1.02218 1.23237 1.00411 0.94782 0.85967 1.88025 1.67779 1.40703 1.33527 1.21443 0.88835 0.86365 0.94618 1.22289 0.96680 0.99966 0.98497 1.20822 0.97365 0.93403 0.85446 1.44333 1.05533 1.66966 1.17209 1.20185 0.86001 1.50784 0.91807 0.93634 1.27230 1.05387 0.99173 0.95243 1.70894 1.13856 1.34959 1.38365 0.82865 0.72416 0.76147 0.74680 1.21545 1.20208 1.20667 1.20700 0.86637 0.93671 0.94633 1.21991 1.00852 0.98073 0.94454 1.22086 1.00510 0.94720 0.85166 1.22303 0.95548 1.02144 0.96849 1.23070 1.04977 0.97517 0.96804 1.23040 0.93040 1.01985 1.02882 0.92625 0.93593 0.92169 0.86782 0.86367 0.89024 0.85319 0.85583 0.93008 0.93010 0.90832 0.93953 0.96463 0.93598 0.97254 0.93893 0.91387 0.90158 0.90056 0.90155 0.86912 0.89542 0.88033 0.87454 0.88580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 8.92 71.98 0.64 -2.31 16 2 C -0.04 -0.66 2.19 -10.79 -0.02 -0.68 16 3 H 0.06 1.19 7.71 -2.39 -0.02 1.17 16 4 C -0.13 -1.80 3.46 29.85 0.10 -1.70 16 5 C 0.51 11.93 7.43 87.66 0.65 12.58 16 6 O -0.58 -18.51 13.44 -3.04 -0.04 -18.55 16 7 N -0.61 -13.81 2.52 -817.51 -2.06 -15.87 16 8 C 0.08 1.17 6.54 86.35 0.56 1.74 16 9 C 0.03 0.70 6.60 72.08 0.48 1.17 16 10 O -0.38 -12.06 9.00 -148.98 -1.34 -13.40 16 11 C 0.13 4.21 0.68 -10.73 -0.01 4.21 16 12 C -0.14 -4.86 4.33 30.66 0.13 -4.73 16 13 C 0.16 6.81 6.28 86.36 0.54 7.35 16 14 N -0.62 -32.21 2.83 -698.23 -1.97 -34.18 16 15 C -0.36 -20.77 9.48 84.03 0.80 -19.97 16 16 H 0.05 2.66 7.94 -2.91 -0.02 2.64 16 17 C -0.07 -4.30 4.69 84.86 0.40 -3.90 16 18 N -0.94 -58.47 12.45 21.65 0.27 -58.20 16 19 Si 1.11 52.15 29.98 68.60 2.06 54.20 16 20 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 21 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 22 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 23 C 0.17 8.31 4.49 86.51 0.39 8.70 16 24 C -0.11 -4.39 5.12 30.80 0.16 -4.23 16 25 C 0.10 2.78 5.29 86.32 0.46 3.24 16 26 C -0.15 -1.79 5.15 -10.79 -0.06 -1.85 16 27 C -0.19 -2.16 10.18 30.59 0.31 -1.85 16 28 C -0.17 -1.63 9.67 30.60 0.30 -1.33 16 29 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 30 H 0.05 1.21 5.95 -2.38 -0.01 1.20 16 31 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.11 1.23 7.66 -2.39 -0.02 1.21 16 33 H 0.12 1.12 7.00 -2.39 -0.02 1.10 16 34 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.13 1.02 6.05 -2.38 -0.01 1.01 16 36 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.05 1.17 6.29 -2.38 -0.02 1.16 16 38 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 39 H 0.07 2.32 6.16 -2.39 -0.01 2.30 16 40 H 0.04 1.89 7.93 -2.39 -0.02 1.87 16 41 H 0.02 0.77 7.83 -2.39 -0.02 0.75 16 42 H 0.25 16.21 6.72 -92.71 -0.62 15.58 16 43 H 0.01 0.49 7.54 -2.38 -0.02 0.47 16 44 H 0.04 2.37 6.38 -2.39 -0.02 2.36 16 45 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 46 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 47 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 48 H 0.08 2.58 7.08 -2.39 -0.02 2.56 16 49 H 0.11 1.20 8.11 -2.39 -0.02 1.18 16 50 H 0.09 1.12 8.05 -2.39 -0.02 1.11 16 51 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 52 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 53 H 0.10 0.87 7.58 -2.39 -0.02 0.85 16 Total: -1.00 -74.43 395.42 3.76 -70.67 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 1.02 Total: 18.89 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: 5.83 Total: -3.56 kcal Atomic # 7 Polarization: -104.48 SS G_CDS: -3.77 Total: -108.25 kcal Atomic # 8 Polarization: -30.57 SS G_CDS: -1.38 Total: -31.95 kcal Atomic # 14 Polarization: 52.15 SS G_CDS: 2.06 Total: 54.20 kcal Total: -74.43 3.76 -70.67 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949250899.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.042 kcal (2) G-P(sol) polarization free energy of solvation -74.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds