Wall clock time and date at job start Tue Mar 31 2020 19:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47671 * 2 1 4 4 C 1.53001 * 109.47464 * 240.00215 * 2 1 3 5 5 C 1.50709 * 109.47028 * 64.99703 * 4 2 1 6 6 O 1.21280 * 119.99628 * 0.02562 * 5 4 2 7 7 N 1.34770 * 119.99863 * 179.97438 * 5 4 2 8 8 C 1.47194 * 136.00278 * 359.64041 * 7 5 4 9 9 C 1.53203 * 87.73791 * 153.42159 * 8 7 5 10 10 C 1.47156 * 135.99652 * 180.02562 * 7 5 4 11 11 C 1.52515 * 114.05662 * 139.66458 * 9 8 7 12 12 C 1.53192 * 109.36493 * 190.02168 * 11 9 8 13 13 C 1.53140 * 109.36063 * 301.11018 * 12 11 9 14 14 N 1.46908 * 109.07519 * 56.57468 * 13 12 11 15 15 C 1.36933 * 120.69811 * 124.52416 * 14 13 12 16 16 H 1.08006 * 120.00261 * 332.82432 * 15 14 13 17 17 C 1.38816 * 120.00162 * 152.83185 * 15 14 13 18 18 N 1.31622 * 119.99450 * 343.30976 * 17 15 14 19 19 Si 1.86792 * 120.00208 * 163.30812 * 17 15 14 20 20 H 1.48502 * 109.47277 * 89.99943 * 19 17 15 21 21 H 1.48500 * 109.47101 * 209.99793 * 19 17 15 22 22 H 1.48498 * 109.47227 * 329.99713 * 19 17 15 23 23 C 1.47134 * 118.60049 * 304.53984 * 14 13 12 24 24 C 1.52997 * 109.47259 * 120.00338 * 2 1 3 25 25 H 1.09001 * 110.35663 * 177.85103 * 24 2 1 26 26 C 1.54945 * 110.31056 * 300.00064 * 24 2 1 27 27 C 1.55307 * 100.98411 * 155.33880 * 26 24 2 28 28 C 1.54436 * 102.22423 * 325.91880 * 27 26 24 29 29 O 1.43237 * 107.61090 * 21.29659 * 28 27 26 30 30 H 1.08996 * 109.46928 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46905 * 299.99717 * 1 2 3 32 32 H 1.09008 * 109.46994 * 59.99634 * 1 2 3 33 33 H 1.08996 * 109.48065 * 185.00160 * 4 2 1 34 34 H 1.08999 * 109.47071 * 305.00546 * 4 2 1 35 35 H 1.09007 * 113.49159 * 268.11239 * 8 7 5 36 36 H 1.09002 * 113.48927 * 38.62192 * 8 7 5 37 37 H 1.09006 * 113.48979 * 321.38189 * 10 7 5 38 38 H 1.09009 * 113.48833 * 91.81760 * 10 7 5 39 39 H 1.09001 * 109.48613 * 309.98806 * 11 9 8 40 40 H 1.08998 * 109.49003 * 70.05745 * 11 9 8 41 41 H 1.09002 * 109.49034 * 181.14282 * 12 11 9 42 42 H 1.09006 * 109.50871 * 61.08741 * 12 11 9 43 43 H 1.09000 * 109.53755 * 296.68886 * 13 12 11 44 44 H 1.09000 * 109.53632 * 176.45051 * 13 12 11 45 45 H 0.96999 * 119.99620 * 180.02562 * 18 17 15 46 46 H 1.08999 * 109.64129 * 291.52390 * 23 14 13 47 47 H 1.08997 * 109.63441 * 170.91956 * 23 14 13 48 48 H 1.09000 * 111.12640 * 273.27726 * 26 24 2 49 49 H 1.08998 * 111.12599 * 37.39333 * 26 24 2 50 50 H 1.08997 * 110.85235 * 84.07430 * 27 26 24 51 51 H 1.08998 * 110.84401 * 207.70139 * 27 26 24 52 52 H 1.09000 * 109.79102 * 261.79506 * 28 27 26 53 53 H 1.09002 * 109.92795 * 140.87611 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0572 -2.4766 6 8 1.0116 1.0875 -2.3632 7 7 1.9854 -0.3912 -3.7001 8 6 2.7242 -1.5462 -4.2354 9 6 1.9022 -1.3997 -5.5199 10 6 1.7930 0.0629 -5.0866 11 6 2.7043 -1.6142 -6.7993 12 6 1.8557 -1.2017 -8.0061 13 6 0.5715 -2.0357 -8.0325 14 7 -0.1399 -1.8621 -6.7590 15 6 -1.4413 -1.4366 -6.7376 16 1 -1.8225 -0.8240 -7.5413 17 6 -2.2707 -1.7923 -5.6828 18 7 -1.9330 -2.7838 -4.8857 19 14 -3.8657 -0.8640 -5.3947 20 1 -4.9629 -1.5179 -6.1522 21 1 -4.1899 -0.8748 -3.9455 22 1 -3.7125 0.5388 -5.8572 23 6 0.5754 -2.1548 -5.5070 24 6 2.0400 -0.7213 1.2492 25 1 3.1292 -0.7630 1.2448 26 6 1.5343 -0.0062 2.5273 27 6 1.5781 -1.1701 3.5546 28 6 1.2142 -2.3908 2.6815 29 8 1.4906 -2.0468 1.3188 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 3.1263 -0.7995 -1.2057 34 1 1.6054 -1.7197 -1.2953 35 1 3.7880 -1.3543 -4.3761 36 1 2.5300 -2.4738 -3.6968 37 1 0.8103 0.4980 -5.2689 38 1 2.6060 0.6883 -5.4557 39 1 3.6095 -1.0077 -6.7669 40 1 2.9742 -2.6666 -6.8871 41 1 2.4197 -1.3733 -8.9230 42 1 1.6013 -0.1447 -7.9280 43 1 0.8227 -3.0875 -8.1694 44 1 -0.0633 -1.7015 -8.8531 45 1 -2.5127 -3.0327 -4.1489 46 1 0.7642 -3.2259 -5.4347 47 1 -0.0241 -1.8275 -4.6575 48 1 2.2071 0.8004 2.8185 49 1 0.5172 0.3627 2.3947 50 1 2.5777 -1.2787 3.9754 51 1 0.8388 -1.0210 4.3415 52 1 0.1558 -2.6244 2.7964 53 1 1.8165 -3.2505 2.9752 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982131263.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:24 Heat of formation + Delta-G solvation = -51.597611 kcal Electronic energy + Delta-G solvation = -31138.025379 eV Core-core repulsion = 27203.281732 eV Total energy + Delta-G solvation = -3934.743647 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.87480 -40.73793 -39.55609 -37.44284 -35.57810 -34.72941 -33.00673 -32.22555 -31.47633 -29.75152 -28.73045 -27.43787 -26.93846 -26.77396 -24.35994 -23.94881 -22.56062 -22.23109 -20.89728 -20.03746 -19.40446 -18.55235 -18.15297 -17.68120 -16.98131 -16.84742 -16.71157 -16.41052 -15.80772 -15.74184 -15.46615 -15.27538 -15.01450 -14.81837 -14.69210 -14.39122 -14.17114 -13.88799 -13.55633 -13.50400 -13.31164 -13.11054 -12.99060 -12.75947 -12.66592 -12.65884 -12.51816 -12.33910 -12.31967 -12.26371 -12.01781 -11.84817 -11.74179 -11.71302 -11.44664 -11.42156 -11.25824 -10.95558 -10.60183 -10.52320 -10.37380 -9.59915 -8.68061 -7.91508 -5.32634 1.34998 1.40205 1.46338 1.67495 1.93614 2.44906 2.90967 3.21614 3.37884 3.42696 3.62461 3.73226 3.84207 3.95404 4.02681 4.03959 4.08812 4.16730 4.26179 4.34875 4.35505 4.39595 4.45267 4.48386 4.57754 4.61241 4.65628 4.72653 4.75284 4.81135 4.85002 4.87336 4.91227 4.93398 4.97161 5.03710 5.06126 5.09732 5.11873 5.19721 5.22153 5.28426 5.30723 5.37599 5.45721 5.50605 5.57490 5.69002 5.76485 6.17378 6.36361 6.86486 7.13360 7.19294 7.87633 8.36113 9.14031 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.011919 B = 0.003572 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.657658 B = 7837.872152 C = 9153.717759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.067 4.067 3 H 0.088 0.912 4 C -0.115 4.115 5 C 0.529 3.471 6 O -0.590 6.590 7 N -0.648 5.648 8 C 0.117 3.883 9 C -0.109 4.109 10 C 0.118 3.882 11 C -0.085 4.085 12 C -0.124 4.124 13 C 0.136 3.864 14 N -0.609 5.609 15 C -0.255 4.255 16 H 0.063 0.937 17 C -0.045 4.045 18 N -0.928 5.928 19 Si 0.948 3.052 20 H -0.276 1.276 21 H -0.300 1.300 22 H -0.277 1.277 23 C 0.212 3.788 24 C 0.086 3.914 25 H 0.090 0.910 26 C -0.156 4.156 27 C -0.146 4.146 28 C 0.041 3.959 29 O -0.402 6.402 30 H 0.040 0.960 31 H 0.067 0.933 32 H 0.036 0.964 33 H 0.120 0.880 34 H 0.086 0.914 35 H 0.128 0.872 36 H 0.077 0.923 37 H 0.031 0.969 38 H 0.105 0.895 39 H 0.093 0.907 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.049 0.951 43 H 0.019 0.981 44 H 0.047 0.953 45 H 0.246 0.754 46 H 0.000 1.000 47 H 0.044 0.956 48 H 0.101 0.899 49 H 0.074 0.926 50 H 0.092 0.908 51 H 0.092 0.908 52 H 0.060 0.940 53 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.922 2.254 11.633 20.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.085 4.085 3 H 0.107 0.893 4 C -0.154 4.154 5 C 0.321 3.679 6 O -0.471 6.471 7 N -0.381 5.381 8 C -0.005 4.005 9 C -0.111 4.111 10 C -0.004 4.004 11 C -0.122 4.122 12 C -0.163 4.163 13 C 0.011 3.989 14 N -0.332 5.332 15 C -0.385 4.385 16 H 0.081 0.919 17 C -0.241 4.241 18 N -0.575 5.575 19 Si 0.777 3.223 20 H -0.202 1.202 21 H -0.227 1.227 22 H -0.202 1.202 23 C 0.086 3.914 24 C 0.029 3.971 25 H 0.108 0.892 26 C -0.193 4.193 27 C -0.183 4.183 28 C -0.036 4.036 29 O -0.322 6.322 30 H 0.059 0.941 31 H 0.086 0.914 32 H 0.055 0.945 33 H 0.138 0.862 34 H 0.105 0.895 35 H 0.146 0.854 36 H 0.096 0.904 37 H 0.050 0.950 38 H 0.123 0.877 39 H 0.111 0.889 40 H 0.092 0.908 41 H 0.107 0.893 42 H 0.068 0.932 43 H 0.037 0.963 44 H 0.065 0.935 45 H 0.055 0.945 46 H 0.018 0.982 47 H 0.063 0.937 48 H 0.120 0.880 49 H 0.093 0.907 50 H 0.110 0.890 51 H 0.111 0.889 52 H 0.078 0.922 53 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 16.383 2.665 11.844 20.391 hybrid contribution -1.837 0.339 0.274 1.888 sum 14.546 3.004 12.119 19.170 Atomic orbital electron populations 1.21826 0.96068 1.00820 1.01446 1.20992 0.95855 0.99207 0.92493 0.89340 1.21588 1.03942 0.99477 0.90432 1.20919 0.78330 0.84771 0.83858 1.90613 1.42706 1.27402 1.86417 1.49759 1.55154 1.28341 1.04889 1.23310 0.97574 0.88645 0.90965 1.22459 0.97503 0.95042 0.96123 1.22937 1.00572 0.97558 0.79379 1.21241 0.97149 1.02474 0.91373 1.21906 0.96198 0.99405 0.98825 1.21111 0.93496 0.96679 0.87581 1.44282 1.09256 1.78298 1.01362 1.19406 0.87852 1.23897 1.07364 0.91949 1.25579 1.00347 0.97707 1.00419 1.70135 1.39081 1.28415 1.19822 0.85563 0.81270 0.79100 0.76399 1.20247 1.22728 1.20184 1.20086 0.88687 0.93534 0.89076 1.23099 0.97839 0.81925 0.94192 0.89229 1.23411 1.03065 0.99052 0.93764 1.23101 1.03910 0.93085 0.98218 1.23275 1.00660 0.98417 0.81218 1.88434 1.84183 1.32491 1.27098 0.94080 0.91417 0.94460 0.86195 0.89537 0.85447 0.90435 0.95011 0.87698 0.88883 0.90834 0.89341 0.93228 0.96302 0.93474 0.94533 0.98245 0.93714 0.88015 0.90742 0.88956 0.88949 0.92170 0.90470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.75 8.50 71.98 0.61 -4.14 16 2 C -0.07 -1.79 1.98 -10.80 -0.02 -1.81 16 3 H 0.09 2.34 7.95 -2.39 -0.02 2.32 16 4 C -0.11 -3.31 4.85 29.85 0.14 -3.16 16 5 C 0.53 19.93 7.79 87.66 0.68 20.61 16 6 O -0.59 -26.84 14.74 -3.03 -0.04 -26.89 16 7 N -0.65 -22.83 3.48 -857.35 -2.99 -25.82 16 8 C 0.12 3.20 7.60 83.41 0.63 3.83 16 9 C -0.11 -3.68 0.96 -52.41 -0.05 -3.73 16 10 C 0.12 4.25 7.54 83.33 0.63 4.88 16 11 C -0.08 -2.19 5.11 30.50 0.16 -2.04 16 12 C -0.12 -3.67 6.03 30.71 0.19 -3.48 16 13 C 0.14 5.44 6.46 86.35 0.56 5.99 16 14 N -0.61 -30.62 3.01 -699.71 -2.10 -32.72 16 15 C -0.25 -14.54 9.60 84.04 0.81 -13.73 16 16 H 0.06 3.50 7.88 -2.91 -0.02 3.48 16 17 C -0.04 -2.65 4.93 84.86 0.42 -2.23 16 18 N -0.93 -57.36 11.16 21.65 0.24 -57.12 16 19 Si 0.95 48.54 29.59 68.60 2.03 50.57 16 20 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 21 H -0.30 -15.81 7.11 99.48 0.71 -15.10 16 22 H -0.28 -13.87 7.11 99.48 0.71 -13.16 16 23 C 0.21 10.08 4.43 86.15 0.38 10.47 16 24 C 0.09 1.80 3.16 31.26 0.10 1.90 16 25 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 26 C -0.16 -2.52 6.46 32.05 0.21 -2.32 16 27 C -0.15 -1.93 7.02 31.87 0.22 -1.71 16 28 C 0.04 0.75 7.79 72.47 0.56 1.32 16 29 O -0.40 -10.15 9.90 -148.98 -1.47 -11.62 16 30 H 0.04 1.45 7.62 -2.39 -0.02 1.43 16 31 H 0.07 1.89 6.14 -2.39 -0.01 1.87 16 32 H 0.04 1.51 5.95 -2.38 -0.01 1.50 16 33 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.09 2.76 7.98 -2.39 -0.02 2.74 16 35 H 0.13 2.31 8.10 -2.38 -0.02 2.29 16 36 H 0.08 2.13 8.12 -2.39 -0.02 2.11 16 37 H 0.03 1.46 8.11 -2.38 -0.02 1.44 16 38 H 0.11 3.01 8.06 -2.38 -0.02 2.99 16 39 H 0.09 1.75 8.09 -2.39 -0.02 1.73 16 40 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.05 1.57 8.03 -2.38 -0.02 1.55 16 43 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.05 1.88 7.93 -2.39 -0.02 1.87 16 45 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 46 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 47 H 0.04 2.55 5.93 -2.39 -0.01 2.54 16 48 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 49 H 0.07 1.39 5.89 -2.39 -0.01 1.37 16 50 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 51 H 0.09 1.00 8.14 -2.39 -0.02 0.99 16 52 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 53 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -77.44 403.05 2.76 -74.68 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: 0.87 Total: 18.27 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: 6.23 Total: 10.65 kcal Atomic # 7 Polarization: -110.82 SS G_CDS: -4.85 Total: -115.66 kcal Atomic # 8 Polarization: -36.99 SS G_CDS: -1.52 Total: -38.51 kcal Atomic # 14 Polarization: 48.54 SS G_CDS: 2.03 Total: 50.57 kcal Total: -77.44 2.76 -74.68 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982131263.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.084 kcal (2) G-P(sol) polarization free energy of solvation -77.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds