Wall clock time and date at job start Tue Mar 31 2020 19:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47144 * 2 1 4 4 C 1.52998 * 109.47362 * 119.99981 * 2 1 3 5 5 C 1.50699 * 109.47065 * 295.00101 * 4 2 1 6 6 O 1.21280 * 119.99999 * 359.97438 * 5 4 2 7 7 N 1.34778 * 120.00358 * 179.97438 * 5 4 2 8 8 C 1.47200 * 135.99384 * 359.63176 * 7 5 4 9 9 C 1.53209 * 87.73304 * 153.42466 * 8 7 5 10 10 C 1.47148 * 136.00109 * 180.02562 * 7 5 4 11 11 C 1.52509 * 114.05588 * 139.66294 * 9 8 7 12 12 C 1.53190 * 109.36689 * 190.02288 * 11 9 8 13 13 C 1.53144 * 109.36034 * 301.11177 * 12 11 9 14 14 N 1.46907 * 109.07788 * 56.57340 * 13 12 11 15 15 C 1.36932 * 120.70551 * 124.51883 * 14 13 12 16 16 H 1.08002 * 119.99409 * 332.83405 * 15 14 13 17 17 C 1.38807 * 120.00559 * 152.82996 * 15 14 13 18 18 N 1.31624 * 119.99836 * 343.31858 * 17 15 14 19 19 Si 1.86799 * 120.00342 * 163.31356 * 17 15 14 20 20 H 1.48500 * 109.46766 * 90.00389 * 19 17 15 21 21 H 1.48497 * 109.47277 * 210.00170 * 19 17 15 22 22 H 1.48495 * 109.46931 * 330.00301 * 19 17 15 23 23 C 1.47147 * 118.60030 * 304.54676 * 14 13 12 24 24 C 1.53002 * 109.47155 * 240.00194 * 2 1 3 25 25 H 1.09003 * 109.86919 * 299.29592 * 24 2 1 26 26 C 1.54092 * 109.88123 * 60.30378 * 24 2 1 27 27 C 1.54818 * 104.18687 * 121.60599 * 26 24 2 28 28 C 1.54991 * 102.09418 * 20.88098 * 27 26 24 29 29 O 1.43751 * 110.00265 * 178.21660 * 24 2 1 30 30 H 1.09001 * 109.46685 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47219 * 300.00351 * 1 2 3 32 32 H 1.09004 * 109.46712 * 60.00425 * 1 2 3 33 33 H 1.08998 * 109.46910 * 54.99826 * 4 2 1 34 34 H 1.08998 * 109.47295 * 174.99828 * 4 2 1 35 35 H 1.08989 * 113.49260 * 268.11522 * 8 7 5 36 36 H 1.09000 * 113.49080 * 38.63078 * 8 7 5 37 37 H 1.09002 * 113.48873 * 321.37329 * 10 7 5 38 38 H 1.08993 * 113.49357 * 91.81645 * 10 7 5 39 39 H 1.08994 * 109.48722 * 309.99141 * 11 9 8 40 40 H 1.09000 * 109.48663 * 70.05816 * 11 9 8 41 41 H 1.08997 * 109.49035 * 181.14420 * 12 11 9 42 42 H 1.09007 * 109.50736 * 61.08866 * 12 11 9 43 43 H 1.08995 * 109.53994 * 296.69381 * 13 12 11 44 44 H 1.09007 * 109.53608 * 176.44904 * 13 12 11 45 45 H 0.96995 * 120.00073 * 179.97438 * 18 17 15 46 46 H 1.08996 * 109.62961 * 291.52179 * 23 14 13 47 47 H 1.08993 * 109.63544 * 170.91677 * 23 14 13 48 48 H 1.08998 * 110.49306 * 240.27757 * 26 24 2 49 49 H 1.08994 * 110.49185 * 2.93161 * 26 24 2 50 50 H 1.08994 * 110.90523 * 139.08198 * 27 26 24 51 51 H 1.09005 * 110.90733 * 262.64749 * 27 26 24 52 52 H 1.09001 * 110.62069 * 81.47181 * 28 27 26 53 53 H 1.08990 * 110.62110 * 204.47835 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6414 0.0571 2.4765 6 8 1.0117 1.0874 2.3632 7 7 1.9845 -0.3918 3.7002 8 6 2.7112 -1.5544 4.2361 9 6 3.0705 -0.6929 5.4511 10 6 1.7911 0.0616 5.0866 11 6 3.0010 -1.4349 6.7817 12 6 3.1310 -0.4303 7.9309 13 6 4.4612 0.3178 7.8032 14 7 4.5257 0.9609 6.4840 15 6 4.7466 2.3077 6.3728 16 1 4.4500 2.9713 7.1717 17 6 5.3519 2.8201 5.2336 18 7 6.0041 2.0190 4.4180 19 14 5.2409 4.6466 4.8580 20 1 6.3889 5.3511 5.4832 21 1 5.2749 4.8526 3.3878 22 1 3.9707 5.1879 5.4045 23 6 4.3472 0.1275 5.2846 24 6 2.0400 -0.7212 -1.2493 25 1 1.6906 -1.7537 -1.2496 26 6 1.5379 0.0023 -2.5137 27 6 2.8327 0.3861 -3.2707 28 6 3.8650 -0.6015 -2.6698 29 8 3.4768 -0.6916 -1.2820 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.6054 -1.7197 1.2951 34 1 3.1263 -0.7995 1.2055 35 1 2.0642 -2.3976 4.4776 36 1 3.5738 -1.8423 3.6352 37 1 1.8746 1.1418 5.2062 38 1 0.8962 -0.3465 5.5564 39 1 2.0458 -1.9542 6.8589 40 1 3.8143 -2.1584 6.8375 41 1 3.1019 -0.9608 8.8826 42 1 2.3072 0.2823 7.8864 43 1 5.2867 -0.3864 7.9062 44 1 4.5286 1.0769 8.5826 45 1 6.4268 2.3769 3.6217 46 1 5.2006 -0.5414 5.1732 47 1 4.2608 0.7653 4.4050 48 1 0.9264 -0.6670 -3.1189 49 1 0.9747 0.8956 -2.2439 50 1 2.7187 0.2252 -4.3427 51 1 3.1139 1.4183 -3.0619 52 1 3.7906 -1.5758 -3.1531 53 1 4.8754 -0.2031 -2.7606 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982131264.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:29 Heat of formation + Delta-G solvation = -53.805022 kcal Electronic energy + Delta-G solvation = -31075.500893 eV Core-core repulsion = 27140.661525 eV Total energy + Delta-G solvation = -3934.839368 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.88241 -40.71583 -39.57113 -37.45280 -35.73828 -34.73542 -33.03059 -32.22498 -31.47566 -29.74717 -28.57283 -27.42520 -26.94568 -26.72258 -24.20676 -23.94843 -22.75566 -22.19818 -21.07822 -20.15633 -19.40644 -18.55803 -18.10102 -17.44298 -16.96465 -16.89100 -16.68064 -16.46158 -16.29583 -15.77805 -15.40231 -15.27818 -14.83816 -14.60103 -14.57401 -14.29998 -14.22931 -14.02509 -13.69329 -13.45676 -13.30812 -13.12286 -12.98067 -12.87847 -12.68864 -12.59022 -12.54500 -12.33966 -12.31480 -12.14359 -12.01783 -11.85720 -11.72650 -11.70871 -11.50796 -11.45283 -11.26029 -10.96215 -10.66244 -10.56138 -10.48173 -9.61811 -8.68732 -7.92170 -5.33404 1.34360 1.39683 1.45784 1.66186 1.92575 2.44303 2.92587 3.20945 3.37383 3.42616 3.62793 3.73889 3.83789 3.99635 4.01952 4.03913 4.08353 4.14705 4.22373 4.34807 4.38407 4.39767 4.45735 4.48387 4.57275 4.62721 4.64341 4.65642 4.75655 4.80279 4.81623 4.87980 4.90189 4.93876 4.94584 4.98187 5.05758 5.09444 5.13645 5.19517 5.23210 5.30375 5.33476 5.37337 5.40401 5.50305 5.56870 5.68670 5.75933 6.03599 6.35704 6.85304 7.12649 7.18196 7.87068 8.35465 9.13363 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.011176 B = 0.003655 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.845786 B = 7658.482390 C = 8977.435367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.071 4.071 3 H 0.043 0.957 4 C -0.115 4.115 5 C 0.530 3.470 6 O -0.591 6.591 7 N -0.648 5.648 8 C 0.117 3.883 9 C -0.109 4.109 10 C 0.118 3.882 11 C -0.084 4.084 12 C -0.124 4.124 13 C 0.136 3.864 14 N -0.609 5.609 15 C -0.255 4.255 16 H 0.063 0.937 17 C -0.046 4.046 18 N -0.929 5.929 19 Si 0.948 3.052 20 H -0.275 1.275 21 H -0.301 1.301 22 H -0.276 1.276 23 C 0.211 3.789 24 C 0.082 3.918 25 H 0.089 0.911 26 C -0.150 4.150 27 C -0.154 4.154 28 C 0.038 3.962 29 O -0.405 6.405 30 H 0.074 0.926 31 H 0.048 0.952 32 H 0.069 0.931 33 H 0.120 0.880 34 H 0.086 0.914 35 H 0.128 0.872 36 H 0.077 0.923 37 H 0.031 0.969 38 H 0.106 0.894 39 H 0.093 0.907 40 H 0.073 0.927 41 H 0.089 0.911 42 H 0.049 0.951 43 H 0.019 0.981 44 H 0.047 0.953 45 H 0.245 0.755 46 H 0.000 1.000 47 H 0.044 0.956 48 H 0.101 0.899 49 H 0.074 0.926 50 H 0.104 0.896 51 H 0.061 0.939 52 H 0.080 0.920 53 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.707 -14.617 -10.012 20.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.091 4.091 3 H 0.062 0.938 4 C -0.154 4.154 5 C 0.322 3.678 6 O -0.473 6.473 7 N -0.381 5.381 8 C -0.005 4.005 9 C -0.111 4.111 10 C -0.005 4.005 11 C -0.122 4.122 12 C -0.163 4.163 13 C 0.011 3.989 14 N -0.332 5.332 15 C -0.385 4.385 16 H 0.081 0.919 17 C -0.241 4.241 18 N -0.575 5.575 19 Si 0.777 3.223 20 H -0.201 1.201 21 H -0.228 1.228 22 H -0.202 1.202 23 C 0.086 3.914 24 C 0.025 3.975 25 H 0.107 0.893 26 C -0.187 4.187 27 C -0.192 4.192 28 C -0.038 4.038 29 O -0.325 6.325 30 H 0.092 0.908 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.138 0.862 34 H 0.104 0.896 35 H 0.146 0.854 36 H 0.096 0.904 37 H 0.050 0.950 38 H 0.123 0.877 39 H 0.111 0.889 40 H 0.092 0.908 41 H 0.107 0.893 42 H 0.068 0.932 43 H 0.037 0.963 44 H 0.065 0.935 45 H 0.055 0.945 46 H 0.018 0.982 47 H 0.062 0.938 48 H 0.120 0.880 49 H 0.092 0.908 50 H 0.122 0.878 51 H 0.080 0.920 52 H 0.098 0.902 53 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.859 -13.949 -10.222 20.420 hybrid contribution 0.518 1.826 -0.401 1.940 sum -10.341 -12.122 -10.623 19.151 Atomic orbital electron populations 1.21861 0.92781 1.02772 1.02553 1.21009 0.97165 0.98360 0.92521 0.93811 1.21577 1.02977 1.00422 0.90466 1.20898 0.77781 0.85216 0.83927 1.90609 1.43295 1.26893 1.86467 1.49762 1.55935 1.27628 1.04810 1.23315 0.95771 0.89595 0.91813 1.22458 0.95435 0.96603 0.96605 1.22940 0.98517 0.99128 0.79867 1.21239 1.03235 0.96747 0.90997 1.21907 0.97320 0.98106 0.98998 1.21115 0.95885 0.95185 0.86682 1.44284 1.83178 1.04258 1.01483 1.19416 1.31350 0.84195 1.03563 0.91887 1.25589 0.97940 1.00670 0.99935 1.70134 1.37035 1.35218 1.15148 0.85553 0.78158 0.82178 0.76392 1.20146 1.22821 1.20157 1.20090 0.90515 0.90936 0.89889 1.22883 0.80738 0.99493 0.94421 0.89348 1.23055 0.98481 1.01623 0.95558 1.23149 0.94690 0.99682 1.01688 1.23743 0.99391 0.99487 0.81148 1.88912 1.21459 1.95285 1.26823 0.90753 0.93256 0.91216 0.86165 0.89575 0.85405 0.90434 0.95034 0.87657 0.88862 0.90801 0.89304 0.93235 0.96273 0.93451 0.94540 0.98190 0.93796 0.88015 0.90751 0.87757 0.92006 0.90197 0.89192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 8.68 71.98 0.62 -2.81 16 2 C -0.07 -1.99 1.69 -10.79 -0.02 -2.01 16 3 H 0.04 1.56 7.95 -2.39 -0.02 1.54 16 4 C -0.11 -3.39 4.94 29.85 0.15 -3.25 16 5 C 0.53 20.31 7.79 87.66 0.68 20.99 16 6 O -0.59 -27.36 14.74 -3.03 -0.04 -27.41 16 7 N -0.65 -23.10 3.48 -857.31 -2.99 -26.09 16 8 C 0.12 3.22 7.60 83.42 0.63 3.86 16 9 C -0.11 -3.70 0.96 -52.40 -0.05 -3.75 16 10 C 0.12 4.28 7.54 83.34 0.63 4.91 16 11 C -0.08 -2.19 5.11 30.50 0.16 -2.04 16 12 C -0.12 -3.67 6.03 30.71 0.19 -3.49 16 13 C 0.14 5.45 6.46 86.35 0.56 6.00 16 14 N -0.61 -30.75 3.01 -699.70 -2.10 -32.85 16 15 C -0.25 -14.60 9.60 84.03 0.81 -13.79 16 16 H 0.06 3.55 7.88 -2.91 -0.02 3.52 16 17 C -0.05 -2.72 4.93 84.86 0.42 -2.30 16 18 N -0.93 -57.79 11.16 21.65 0.24 -57.55 16 19 Si 0.95 48.80 29.59 68.60 2.03 50.83 16 20 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 21 H -0.30 -15.96 7.11 99.48 0.71 -15.26 16 22 H -0.28 -13.91 7.11 99.48 0.71 -13.21 16 23 C 0.21 10.12 4.43 86.15 0.38 10.51 16 24 C 0.08 1.80 2.97 30.96 0.09 1.89 16 25 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 26 C -0.15 -2.56 6.02 31.58 0.19 -2.37 16 27 C -0.15 -2.58 7.15 31.90 0.23 -2.35 16 28 C 0.04 0.74 7.72 72.66 0.56 1.30 16 29 O -0.40 -10.99 10.54 -148.98 -1.57 -12.56 16 30 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.05 1.53 5.95 -2.39 -0.01 1.52 16 32 H 0.07 1.43 6.56 -2.38 -0.02 1.41 16 33 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 34 H 0.09 2.81 7.62 -2.39 -0.02 2.79 16 35 H 0.13 2.33 8.10 -2.39 -0.02 2.31 16 36 H 0.08 2.15 8.12 -2.39 -0.02 2.13 16 37 H 0.03 1.45 8.11 -2.39 -0.02 1.43 16 38 H 0.11 3.04 8.06 -2.39 -0.02 3.02 16 39 H 0.09 1.76 8.09 -2.39 -0.02 1.74 16 40 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.05 1.57 8.03 -2.38 -0.02 1.55 16 43 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.05 1.90 7.93 -2.38 -0.02 1.88 16 45 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 46 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 47 H 0.04 2.53 5.93 -2.39 -0.01 2.51 16 48 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 49 H 0.07 1.40 6.51 -2.39 -0.02 1.38 16 50 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 51 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 52 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 53 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -78.83 404.32 2.65 -76.18 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: 0.86 Total: 18.14 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: 6.23 Total: 11.31 kcal Atomic # 7 Polarization: -111.64 SS G_CDS: -4.85 Total: -116.49 kcal Atomic # 8 Polarization: -38.35 SS G_CDS: -1.62 Total: -39.97 kcal Atomic # 14 Polarization: 48.80 SS G_CDS: 2.03 Total: 50.83 kcal Total: -78.83 2.65 -76.18 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982131264.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.371 kcal (2) G-P(sol) polarization free energy of solvation -78.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds