Wall clock time and date at job start Tue Mar 31 2020 19:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46768 * 2 1 4 4 C 1.50698 * 109.47021 * 240.00600 * 2 1 3 5 5 O 1.21287 * 119.99396 * 240.00111 * 4 2 1 6 6 N 1.34774 * 120.00372 * 59.99273 * 4 2 1 7 7 C 1.47202 * 126.70418 * 179.97438 * 6 4 2 8 8 C 1.53760 * 106.40784 * 211.34100 * 7 6 4 9 9 C 1.53003 * 112.06648 * 103.40795 * 8 7 6 10 10 C 1.54322 * 109.07495 * 229.19978 * 8 7 6 11 11 N 1.48112 * 104.70794 * 88.33731 * 10 8 7 12 12 C 1.36929 * 127.84023 * 219.76000 * 11 10 8 13 13 H 1.08008 * 120.00169 * 15.68705 * 12 11 10 14 14 C 1.38816 * 120.00074 * 195.68905 * 12 11 10 15 15 N 1.31614 * 119.99828 * 9.10527 * 14 12 11 16 16 Si 1.86799 * 120.00130 * 189.11389 * 14 12 11 17 17 H 1.48498 * 109.47432 * 89.99462 * 16 14 12 18 18 H 1.48503 * 109.46988 * 209.99979 * 16 14 12 19 19 H 1.48506 * 109.47036 * 329.99535 * 16 14 12 20 20 C 1.48106 * 104.31078 * 39.78352 * 11 10 8 21 21 C 1.54314 * 104.71798 * 320.21790 * 20 11 10 22 22 C 1.52999 * 112.91603 * 146.34476 * 21 20 11 23 23 C 1.47203 * 126.70215 * 359.69780 * 6 4 2 24 24 C 1.52999 * 109.47275 * 120.00178 * 2 1 3 25 25 H 1.09003 * 109.82314 * 179.43731 * 24 2 1 26 26 C 1.54388 * 109.90501 * 300.36429 * 24 2 1 27 27 C 1.55567 * 102.27088 * 140.91195 * 26 24 2 28 28 C 1.54945 * 100.82940 * 325.88310 * 27 26 24 29 29 O 1.43238 * 109.82978 * 58.54614 * 24 2 1 30 30 H 1.08994 * 109.47258 * 59.99798 * 1 2 3 31 31 H 1.08993 * 109.46851 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46830 * 300.00059 * 1 2 3 33 33 H 1.09001 * 110.07037 * 330.57837 * 7 6 4 34 34 H 1.09005 * 110.06836 * 92.05031 * 7 6 4 35 35 H 1.09002 * 109.46854 * 61.01607 * 9 8 7 36 36 H 1.09001 * 109.47045 * 181.01188 * 9 8 7 37 37 H 1.09000 * 109.46649 * 301.01117 * 9 8 7 38 38 H 1.08995 * 110.38296 * 207.14441 * 10 8 7 39 39 H 1.08999 * 110.38602 * 329.52880 * 10 8 7 40 40 H 0.96999 * 119.99889 * 179.97438 * 15 14 12 41 41 H 1.09009 * 110.38662 * 201.40991 * 20 11 10 42 42 H 1.08994 * 110.39071 * 79.03389 * 20 11 10 43 43 H 1.08997 * 109.47686 * 301.83663 * 22 21 20 44 44 H 1.08995 * 109.47323 * 61.84639 * 22 21 20 45 45 H 1.09007 * 109.46926 * 181.84148 * 22 21 20 46 46 H 1.09000 * 110.06364 * 267.90351 * 23 6 4 47 47 H 1.09001 * 110.07257 * 29.42736 * 23 6 4 48 48 H 1.08999 * 110.84972 * 259.10274 * 26 24 2 49 49 H 1.09005 * 110.84363 * 22.52523 * 26 24 2 50 50 H 1.08999 * 111.22519 * 207.98626 * 27 26 24 51 51 H 1.09005 * 111.13233 * 83.74727 * 27 26 24 52 52 H 1.08994 * 110.31344 * 277.47870 * 28 27 26 53 53 H 1.08995 * 110.31159 * 155.40128 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.7296 -1.6964 -1.1192 6 7 1.7067 -0.2498 -2.4546 7 6 2.1134 -0.8241 -3.7475 8 6 2.2204 0.3529 -4.7311 9 6 3.6739 0.7513 -4.9948 10 6 1.4495 0.0035 -6.0215 11 7 0.0621 0.4538 -5.7642 12 6 -1.1034 -0.1738 -6.1146 13 1 -1.0897 -1.2128 -6.4095 14 6 -2.3024 0.5252 -6.0909 15 7 -2.3008 1.8285 -5.9078 16 14 -3.9183 -0.3840 -6.3187 17 1 -4.4323 -0.8192 -4.9952 18 1 -4.9073 0.5180 -6.9617 19 1 -3.6997 -1.5735 -7.1804 20 6 0.2216 1.7373 -5.0426 21 6 1.4065 1.5024 -4.0822 22 6 2.2534 2.7576 -3.8628 23 6 0.8701 0.9223 -2.7598 24 6 2.0401 -0.7213 1.2492 25 1 3.1300 -0.7333 1.2499 26 6 1.5235 -0.0067 2.5165 27 6 1.1944 -1.2004 3.4582 28 6 0.7114 -2.2561 2.4322 29 8 1.5392 -2.0630 1.2741 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 3.0798 -1.3188 -3.6497 34 1 1.3630 -1.5349 -4.0937 35 1 4.2071 -0.0907 -5.4363 36 1 3.6998 1.5979 -5.6810 37 1 4.1502 1.0307 -4.0550 38 1 1.8709 0.5388 -6.8723 39 1 1.4731 -1.0718 -6.1985 40 1 -3.1386 2.3170 -5.8916 41 1 -0.6823 1.9716 -4.4802 42 1 0.4533 2.5401 -5.7423 43 1 2.6341 3.1112 -4.8209 44 1 1.6401 3.5345 -3.4064 45 1 3.0895 2.5213 -3.2045 46 1 -0.1704 0.6189 -2.8762 47 1 0.9577 1.6619 -1.9639 48 1 2.2990 0.6258 2.9486 49 1 0.6286 0.5754 2.2960 50 1 0.4009 -0.9426 4.1597 51 1 2.0854 -1.5430 3.9845 52 1 -0.3358 -2.0881 2.1809 53 1 0.8475 -3.2613 2.8310 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982528378.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:45 Heat of formation + Delta-G solvation = -69.715340 kcal Electronic energy + Delta-G solvation = -32026.344581 eV Core-core repulsion = 28090.815289 eV Total energy + Delta-G solvation = -3935.529291 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.98071 -40.83700 -39.37004 -36.45294 -35.07350 -34.24697 -33.05351 -32.80091 -32.41474 -29.30267 -28.44566 -27.62094 -26.93035 -26.50310 -25.49836 -23.84194 -22.83533 -21.87995 -21.55653 -20.09720 -19.21758 -18.65778 -18.07870 -17.60584 -17.05219 -16.69221 -16.62000 -16.42164 -15.77880 -15.62054 -15.32921 -15.11893 -14.88918 -14.65036 -14.56306 -14.30460 -14.15462 -13.52378 -13.46718 -13.31100 -13.17620 -13.07522 -12.88998 -12.81305 -12.74484 -12.62607 -12.57723 -12.47519 -12.46411 -12.11406 -12.02896 -11.95059 -11.89653 -11.76733 -11.52692 -11.40773 -11.17458 -11.15207 -10.73348 -10.61843 -10.40563 -9.63358 -8.83492 -7.88746 -5.22988 1.45033 1.46070 1.54057 1.66191 2.04298 2.48211 2.96751 3.28007 3.39848 3.53612 3.56758 3.68065 3.72734 3.82205 3.96491 3.99534 4.06537 4.16607 4.24325 4.26527 4.34156 4.39066 4.40637 4.45325 4.59452 4.66871 4.72862 4.76724 4.82378 4.83143 4.85406 4.88916 4.94751 4.95331 4.97319 5.00385 5.03990 5.09420 5.13446 5.17127 5.18369 5.24062 5.33293 5.37886 5.39709 5.47740 5.52458 5.64774 5.80071 6.22781 6.23678 6.64114 7.06390 7.20356 7.71731 8.50659 9.23755 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.012049 B = 0.003906 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2323.268761 B = 7167.590198 C = 8384.910318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 H 0.131 0.869 4 C 0.529 3.471 5 O -0.577 6.577 6 N -0.610 5.610 7 C 0.128 3.872 8 C -0.073 4.073 9 C -0.117 4.117 10 C 0.135 3.865 11 N -0.615 5.615 12 C -0.235 4.235 13 H 0.069 0.931 14 C -0.050 4.050 15 N -0.938 5.938 16 Si 0.966 3.034 17 H -0.288 1.288 18 H -0.291 1.291 19 H -0.275 1.275 20 C 0.181 3.819 21 C -0.086 4.086 22 C -0.117 4.117 23 C 0.129 3.871 24 C 0.097 3.903 25 H 0.070 0.930 26 C -0.147 4.147 27 C -0.145 4.145 28 C 0.033 3.967 29 O -0.395 6.395 30 H 0.060 0.940 31 H 0.040 0.960 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.037 0.963 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.029 0.971 39 H 0.043 0.957 40 H 0.250 0.750 41 H 0.058 0.942 42 H 0.003 0.997 43 H 0.062 0.938 44 H 0.064 0.936 45 H 0.070 0.930 46 H 0.045 0.955 47 H 0.099 0.901 48 H 0.103 0.897 49 H 0.096 0.904 50 H 0.104 0.896 51 H 0.081 0.919 52 H 0.058 0.942 53 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.637 2.631 17.237 19.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.132 4.132 3 H 0.149 0.851 4 C 0.319 3.681 5 O -0.457 6.457 6 N -0.343 5.343 7 C 0.005 3.995 8 C -0.076 4.076 9 C -0.174 4.174 10 C 0.009 3.991 11 N -0.338 5.338 12 C -0.364 4.364 13 H 0.086 0.914 14 C -0.245 4.245 15 N -0.586 5.586 16 Si 0.795 3.205 17 H -0.216 1.216 18 H -0.218 1.218 19 H -0.200 1.200 20 C 0.055 3.945 21 C -0.089 4.089 22 C -0.174 4.174 23 C 0.006 3.994 24 C 0.039 3.961 25 H 0.088 0.912 26 C -0.184 4.184 27 C -0.183 4.183 28 C -0.043 4.043 29 O -0.314 6.314 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.116 0.884 33 H 0.089 0.911 34 H 0.056 0.944 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.047 0.953 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.076 0.924 42 H 0.021 0.979 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.089 0.911 46 H 0.063 0.937 47 H 0.117 0.883 48 H 0.121 0.879 49 H 0.114 0.886 50 H 0.123 0.877 51 H 0.100 0.900 52 H 0.076 0.924 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 9.807 1.923 17.179 19.874 hybrid contribution -1.389 -0.705 -0.774 1.740 sum 8.418 1.219 16.405 18.479 Atomic orbital electron populations 1.21899 0.92188 1.02184 1.04003 1.21756 0.98555 1.01337 0.91587 0.85107 1.20855 0.79291 0.84051 0.83855 1.90667 1.40494 1.27915 1.86579 1.48618 1.50592 1.29991 1.05055 1.21890 0.99083 0.95669 0.82885 1.22245 0.96633 0.93897 0.94787 1.21628 0.91930 1.01758 1.02078 1.21823 0.85313 0.97374 0.94559 1.45073 1.00238 1.23497 1.65006 1.19211 0.84754 0.93424 1.39039 0.91357 1.25479 1.00510 0.96123 1.02349 1.70038 1.25630 1.06289 1.56638 0.85273 0.80069 0.77662 0.77505 1.21560 1.21758 1.19993 1.21379 0.94746 0.86738 0.91671 1.22508 0.96183 0.95912 0.94276 1.21623 0.98865 0.94649 1.02269 1.22218 0.93177 0.86802 0.97195 1.22562 0.97834 0.82120 0.93579 0.91188 1.23351 1.03543 0.98489 0.93000 1.23273 1.02925 0.94281 0.97774 1.23604 0.94613 1.00507 0.85586 1.88615 1.66952 1.29888 1.45994 0.92110 0.94029 0.88371 0.91136 0.94434 0.92036 0.91228 0.91517 0.95300 0.93900 0.94102 0.92357 0.97925 0.91885 0.91669 0.91064 0.93711 0.88331 0.87868 0.88558 0.87749 0.90021 0.92380 0.89828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 8.54 71.98 0.61 -2.81 16 2 C -0.11 -2.70 1.95 -11.54 -0.02 -2.72 16 3 H 0.13 2.36 7.87 -2.39 -0.02 2.34 16 4 C 0.53 17.96 7.10 87.66 0.62 18.59 16 5 O -0.58 -24.05 15.59 13.32 0.21 -23.84 16 6 N -0.61 -20.76 3.31 -814.70 -2.70 -23.46 16 7 C 0.13 4.63 6.12 86.50 0.53 5.16 16 8 C -0.07 -2.44 1.08 -50.77 -0.05 -2.49 16 9 C -0.12 -2.99 7.53 71.98 0.54 -2.44 16 10 C 0.14 5.50 6.11 86.52 0.53 6.03 16 11 N -0.61 -30.45 3.38 -688.62 -2.32 -32.78 16 12 C -0.24 -13.00 10.35 84.04 0.87 -12.13 16 13 H 0.07 3.75 7.85 -2.91 -0.02 3.73 16 14 C -0.05 -2.77 5.40 84.86 0.46 -2.32 16 15 N -0.94 -53.86 10.87 21.65 0.24 -53.63 16 16 Si 0.97 45.24 29.56 68.60 2.03 47.27 16 17 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 18 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 19 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 20 C 0.18 8.11 4.77 86.52 0.41 8.52 16 21 C -0.09 -2.88 1.09 -50.67 -0.06 -2.94 16 22 C -0.12 -2.94 7.55 71.98 0.54 -2.40 16 23 C 0.13 4.18 4.34 86.60 0.38 4.56 16 24 C 0.10 2.25 2.78 31.06 0.09 2.33 16 25 H 0.07 1.76 8.09 -2.39 -0.02 1.74 16 26 C -0.15 -2.01 6.36 31.95 0.20 -1.80 16 27 C -0.15 -1.91 7.18 32.14 0.23 -1.67 16 28 C 0.03 0.66 7.75 72.65 0.56 1.23 16 29 O -0.39 -11.60 9.32 -132.61 -1.24 -12.84 16 30 H 0.06 1.57 5.15 -2.39 -0.01 1.56 16 31 H 0.04 1.17 7.66 -2.39 -0.02 1.16 16 32 H 0.10 1.63 6.08 -2.39 -0.01 1.61 16 33 H 0.07 2.49 7.61 -2.39 -0.02 2.47 16 34 H 0.04 1.58 7.46 -2.38 -0.02 1.56 16 35 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.07 1.67 7.17 -2.39 -0.02 1.65 16 37 H 0.07 1.56 7.08 -2.39 -0.02 1.54 16 38 H 0.03 1.16 7.99 -2.39 -0.02 1.14 16 39 H 0.04 1.75 7.66 -2.39 -0.02 1.73 16 40 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 41 H 0.06 2.97 6.03 -2.38 -0.01 2.95 16 42 H 0.00 0.13 7.99 -2.39 -0.02 0.11 16 43 H 0.06 1.56 7.15 -2.39 -0.02 1.55 16 44 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.07 1.52 7.10 -2.38 -0.02 1.51 16 46 H 0.04 1.79 6.88 -2.39 -0.02 1.77 16 47 H 0.10 2.51 6.59 -2.39 -0.02 2.50 16 48 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 49 H 0.10 1.10 5.75 -2.38 -0.01 1.09 16 50 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 51 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 52 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 53 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -72.13 389.80 3.55 -68.58 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 0.89 Total: 18.00 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: 6.45 Total: 12.70 kcal Atomic # 7 Polarization: -105.08 SS G_CDS: -4.79 Total: -109.86 kcal Atomic # 8 Polarization: -35.65 SS G_CDS: -1.03 Total: -36.68 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -72.13 3.55 -68.58 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982528378.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.132 kcal (2) G-P(sol) polarization free energy of solvation -72.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds