Wall clock time and date at job start Tue Mar 31 2020 19:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47106 * 2 1 4 4 C 1.50701 * 109.47351 * 120.00155 * 2 1 3 5 5 O 1.21283 * 120.00191 * 120.00268 * 4 2 1 6 6 N 1.34782 * 119.99986 * 300.00243 * 4 2 1 7 7 C 1.48106 * 127.84474 * 359.97019 * 6 4 2 8 8 C 1.54311 * 104.71440 * 219.80480 * 7 6 4 9 9 C 1.52996 * 112.91866 * 98.44310 * 8 7 6 10 10 C 1.53764 * 109.07952 * 223.73697 * 8 7 6 11 11 N 1.47207 * 106.40383 * 93.20678 * 10 8 7 12 12 C 1.36940 * 126.69951 * 211.33390 * 11 10 8 13 13 H 1.08003 * 119.99479 * 165.67038 * 12 11 10 14 14 C 1.38804 * 120.00008 * 345.66413 * 12 11 10 15 15 N 1.31622 * 120.00247 * 350.70749 * 14 12 11 16 16 Si 1.86810 * 119.99877 * 170.70703 * 14 12 11 17 17 H 1.48493 * 109.47005 * 90.00021 * 16 14 12 18 18 H 1.48501 * 109.47040 * 209.99959 * 16 14 12 19 19 H 1.48500 * 109.46752 * 329.99813 * 16 14 12 20 20 C 1.47207 * 106.59411 * 31.59039 * 11 10 8 21 21 C 1.54080 * 106.24048 * 328.32106 * 20 11 10 22 22 C 1.53000 * 112.74761 * 141.71537 * 21 20 11 23 23 C 1.48106 * 127.84339 * 179.97438 * 6 4 2 24 24 C 1.53000 * 109.47166 * 240.00290 * 2 1 3 25 25 H 1.08997 * 109.86719 * 298.99153 * 24 2 1 26 26 C 1.54104 * 109.87758 * 59.99847 * 24 2 1 27 27 C 1.54813 * 104.18705 * 121.45452 * 26 24 2 28 28 C 1.54994 * 102.09166 * 20.87883 * 27 26 24 29 29 O 1.43740 * 109.87876 * 177.82839 * 24 2 1 30 30 H 1.09001 * 109.47157 * 299.99263 * 1 2 3 31 31 H 1.08998 * 109.47483 * 59.99625 * 1 2 3 32 32 H 1.09004 * 109.47106 * 179.97438 * 1 2 3 33 33 H 1.09007 * 110.38847 * 100.99346 * 7 6 4 34 34 H 1.08998 * 110.39283 * 338.61761 * 7 6 4 35 35 H 1.08999 * 109.47079 * 182.65132 * 9 8 7 36 36 H 1.09003 * 109.47050 * 302.64928 * 9 8 7 37 37 H 1.08997 * 109.47779 * 62.65131 * 9 8 7 38 38 H 1.09003 * 110.06462 * 333.97199 * 10 8 7 39 39 H 1.08993 * 110.07039 * 212.44332 * 10 8 7 40 40 H 0.97001 * 120.00021 * 180.02562 * 15 14 12 41 41 H 1.08999 * 110.05909 * 87.64681 * 20 11 10 42 42 H 1.09002 * 110.06622 * 209.17339 * 20 11 10 43 43 H 1.08997 * 109.47279 * 301.39764 * 22 21 20 44 44 H 1.08996 * 109.47435 * 61.40170 * 22 21 20 45 45 H 1.08999 * 109.46999 * 181.40069 * 22 21 20 46 46 H 1.08999 * 110.39007 * 21.39147 * 23 6 4 47 47 H 1.08996 * 110.38763 * 259.00544 * 23 6 4 48 48 H 1.09002 * 110.48272 * 240.12837 * 26 24 2 49 49 H 1.08997 * 110.48676 * 2.64383 * 26 24 2 50 50 H 1.08999 * 110.90405 * 139.07502 * 27 26 24 51 51 H 1.09001 * 110.90609 * 262.64967 * 27 26 24 52 52 H 1.08999 * 110.62093 * 81.47693 * 28 27 26 53 53 H 1.08998 * 110.62107 * 204.31686 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7297 -1.6965 1.1191 6 7 1.7067 -0.2500 2.4546 7 6 0.8744 0.9280 2.7906 8 6 1.5843 1.5785 3.9964 9 6 2.4712 2.7603 3.5992 10 6 0.5323 1.9731 5.0462 11 7 0.4353 0.8418 5.9830 12 6 -0.6788 0.4435 6.6726 13 1 -0.7013 -0.5257 7.1487 14 6 -1.7789 1.2853 6.7597 15 7 -1.6898 2.5302 6.3415 16 14 -3.3861 0.6515 7.4704 17 1 -3.4045 0.8838 8.9369 18 1 -4.5231 1.3702 6.8411 19 1 -3.5082 -0.8032 7.1979 20 6 1.7713 0.2261 6.0386 21 6 2.3972 0.4283 4.6452 22 6 3.8933 0.7425 4.7087 23 6 2.1002 -0.8073 3.7692 24 6 2.0400 -0.7212 -1.2493 25 1 1.6950 -1.7551 -1.2469 26 6 1.5314 -0.0020 -2.5138 27 6 2.8227 0.3896 -3.2728 28 6 3.8622 -0.5908 -2.6723 29 8 3.4764 -0.6821 -1.2840 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.1328 0.6152 3.0663 34 1 0.8408 1.6215 1.9503 35 1 2.9798 3.1460 4.4828 36 1 3.2106 2.4305 2.8694 37 1 1.8552 3.5463 3.1625 38 1 -0.4306 2.1438 4.5648 39 1 0.8507 2.8709 5.5757 40 1 -2.4586 3.1186 6.4028 41 1 2.3780 0.7175 6.7992 42 1 1.6840 -0.8378 6.2587 43 1 4.0505 1.6440 5.3007 44 1 4.4206 -0.0921 5.1707 45 1 4.2747 0.8993 3.6997 46 1 2.9927 -1.4247 3.6683 47 1 1.2821 -1.3876 4.1958 48 1 0.9236 -0.6759 -3.1175 49 1 0.9608 0.8866 -2.2438 50 1 2.7084 0.2270 -4.3445 51 1 3.0974 1.4238 -3.0651 52 1 3.7936 -1.5658 -3.1546 53 1 4.8702 -0.1871 -2.7673 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982528382.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:55 Heat of formation + Delta-G solvation = -72.037552 kcal Electronic energy + Delta-G solvation = -31838.760120 eV Core-core repulsion = 27903.130130 eV Total energy + Delta-G solvation = -3935.629990 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.94441 -40.75827 -39.38325 -36.52633 -35.26578 -34.31968 -33.07238 -32.75294 -32.40505 -29.09445 -28.45404 -27.57461 -26.86815 -26.59569 -25.41356 -23.87191 -23.08561 -21.71914 -21.51054 -20.27513 -19.30779 -18.65770 -18.17540 -17.25068 -16.97459 -16.85923 -16.56942 -16.33173 -15.82668 -15.76315 -15.44274 -14.91303 -14.72195 -14.62782 -14.59511 -14.45546 -14.14691 -13.59962 -13.47718 -13.31679 -13.26393 -13.11762 -12.92082 -12.81656 -12.73814 -12.65259 -12.58450 -12.43543 -12.37646 -12.13819 -12.06385 -11.92556 -11.86146 -11.79438 -11.48426 -11.41373 -11.20381 -11.18962 -10.73035 -10.61114 -10.58522 -9.69698 -8.81505 -7.87186 -5.21358 1.47802 1.48424 1.57391 1.65968 1.97074 2.50624 2.92625 3.28100 3.37710 3.52929 3.59693 3.68546 3.74244 3.86380 3.94623 3.98716 4.11919 4.14352 4.21698 4.25644 4.31908 4.37547 4.42837 4.45120 4.58134 4.62869 4.69089 4.75134 4.80485 4.81688 4.85192 4.87757 4.89817 4.94193 4.94627 5.00038 5.00729 5.06650 5.15010 5.16302 5.20438 5.23093 5.27433 5.30122 5.37462 5.49466 5.54000 5.64475 5.79979 6.07238 6.24470 6.63162 7.10655 7.18224 7.76631 8.49444 9.25389 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016388 B = 0.003333 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.160094 B = 8399.217949 C = 9079.451760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 H 0.114 0.886 4 C 0.533 3.467 5 O -0.577 6.577 6 N -0.615 5.615 7 C 0.127 3.873 8 C -0.088 4.088 9 C -0.116 4.116 10 C 0.193 3.807 11 N -0.614 5.614 12 C -0.240 4.240 13 H 0.073 0.927 14 C -0.053 4.053 15 N -0.940 5.940 16 Si 0.970 3.030 17 H -0.288 1.288 18 H -0.291 1.291 19 H -0.274 1.274 20 C 0.141 3.859 21 C -0.073 4.073 22 C -0.116 4.116 23 C 0.125 3.875 24 C 0.095 3.905 25 H 0.052 0.948 26 C -0.147 4.147 27 C -0.147 4.147 28 C 0.032 3.968 29 O -0.393 6.393 30 H 0.067 0.933 31 H 0.102 0.898 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.101 0.899 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.048 0.952 39 H -0.003 1.003 40 H 0.249 0.751 41 H 0.020 0.980 42 H 0.042 0.958 43 H 0.065 0.935 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.072 0.928 47 H 0.053 0.947 48 H 0.091 0.909 49 H 0.098 0.902 50 H 0.100 0.900 51 H 0.081 0.919 52 H 0.060 0.940 53 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.959 -0.283 -19.214 20.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 H 0.132 0.868 4 C 0.323 3.677 5 O -0.457 6.457 6 N -0.347 5.347 7 C 0.005 3.995 8 C -0.090 4.090 9 C -0.173 4.173 10 C 0.067 3.933 11 N -0.338 5.338 12 C -0.369 4.369 13 H 0.091 0.909 14 C -0.247 4.247 15 N -0.588 5.588 16 Si 0.799 3.201 17 H -0.215 1.215 18 H -0.217 1.217 19 H -0.199 1.199 20 C 0.015 3.985 21 C -0.076 4.076 22 C -0.173 4.173 23 C 0.002 3.998 24 C 0.037 3.963 25 H 0.070 0.930 26 C -0.184 4.184 27 C -0.185 4.185 28 C -0.044 4.044 29 O -0.313 6.313 30 H 0.086 0.914 31 H 0.120 0.880 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.119 0.881 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.015 0.985 40 H 0.059 0.941 41 H 0.037 0.963 42 H 0.061 0.939 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.091 0.909 47 H 0.072 0.928 48 H 0.110 0.890 49 H 0.116 0.884 50 H 0.119 0.881 51 H 0.100 0.900 52 H 0.079 0.921 53 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 8.262 -0.808 -19.137 20.860 hybrid contribution -1.139 -0.443 1.020 1.591 sum 7.123 -1.251 -18.117 19.508 Atomic orbital electron populations 1.21946 0.90534 1.03168 1.04799 1.21498 0.98591 1.01145 0.90674 0.86790 1.20803 0.79152 0.84007 0.83712 1.90669 1.40038 1.28501 1.86489 1.49071 1.50898 1.29904 1.04874 1.22504 0.93206 0.86489 0.97333 1.22445 0.95904 0.95650 0.95015 1.21598 0.98580 0.95744 1.01385 1.20954 0.95482 0.88466 0.88412 1.44669 1.05606 1.34173 1.49343 1.19267 0.91780 0.98974 1.26897 0.90936 1.25543 1.01718 0.95536 1.01947 1.70094 1.30099 1.05270 1.53326 0.85223 0.79636 0.77635 0.77647 1.21508 1.21688 1.19946 1.21512 0.86387 0.96472 0.94145 1.22260 0.96470 0.94137 0.94686 1.21601 0.91858 1.01949 1.01919 1.22270 0.99490 0.95644 0.82395 1.22526 0.81449 0.98147 0.94212 0.93029 1.23085 0.98856 1.01949 0.94556 1.23128 0.93818 1.00178 1.01342 1.23771 1.00090 0.99157 0.81409 1.89009 1.20875 1.95094 1.26329 0.91409 0.87959 0.92730 0.92443 0.88129 0.92255 0.91567 0.91673 0.93365 0.98550 0.94143 0.96261 0.93945 0.91562 0.91971 0.92117 0.90944 0.92830 0.89028 0.88386 0.88126 0.90011 0.92134 0.88370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 8.68 71.98 0.63 -2.23 16 2 C -0.10 -2.31 1.72 -11.54 -0.02 -2.33 16 3 H 0.11 2.38 7.95 -2.39 -0.02 2.37 16 4 C 0.53 17.49 7.14 87.66 0.63 18.12 16 5 O -0.58 -23.44 15.65 12.74 0.20 -23.24 16 6 N -0.62 -20.04 3.30 -808.38 -2.67 -22.71 16 7 C 0.13 4.00 4.34 86.52 0.38 4.37 16 8 C -0.09 -2.98 1.08 -50.77 -0.05 -3.04 16 9 C -0.12 -3.18 7.52 71.98 0.54 -2.63 16 10 C 0.19 8.75 4.55 86.50 0.39 9.14 16 11 N -0.61 -30.33 3.38 -694.83 -2.35 -32.68 16 12 C -0.24 -13.11 10.28 84.03 0.86 -12.24 16 13 H 0.07 3.88 7.85 -2.91 -0.02 3.86 16 14 C -0.05 -2.92 5.38 84.86 0.46 -2.46 16 15 N -0.94 -53.88 10.87 21.65 0.24 -53.65 16 16 Si 0.97 44.58 29.56 68.60 2.03 46.61 16 17 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 18 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 20 C 0.14 5.75 6.20 86.61 0.54 6.29 16 21 C -0.07 -2.48 1.08 -50.65 -0.05 -2.53 16 22 C -0.12 -3.22 7.53 71.98 0.54 -2.68 16 23 C 0.12 4.36 6.11 86.53 0.53 4.89 16 24 C 0.09 2.17 2.49 30.97 0.08 2.25 16 25 H 0.05 1.36 8.08 -2.39 -0.02 1.34 16 26 C -0.15 -2.01 6.03 31.59 0.19 -1.82 16 27 C -0.15 -1.79 7.15 31.90 0.23 -1.57 16 28 C 0.03 0.57 7.72 72.66 0.56 1.13 16 29 O -0.39 -10.86 10.26 -133.20 -1.37 -12.22 16 30 H 0.07 1.45 5.35 -2.39 -0.01 1.44 16 31 H 0.10 1.32 6.53 -2.39 -0.02 1.30 16 32 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.06 2.12 7.41 -2.38 -0.02 2.10 16 34 H 0.10 2.54 6.33 -2.39 -0.02 2.52 16 35 H 0.06 1.64 7.10 -2.39 -0.02 1.63 16 36 H 0.07 1.62 7.16 -2.39 -0.02 1.60 16 37 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.05 2.44 6.25 -2.39 -0.01 2.43 16 39 H 0.00 -0.17 7.88 -2.39 -0.02 -0.19 16 40 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 41 H 0.02 0.80 7.93 -2.39 -0.02 0.78 16 42 H 0.04 1.71 7.62 -2.39 -0.02 1.69 16 43 H 0.07 1.77 7.09 -2.39 -0.02 1.75 16 44 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.06 1.62 7.17 -2.39 -0.02 1.60 16 46 H 0.07 2.53 7.63 -2.39 -0.02 2.51 16 47 H 0.05 2.07 7.55 -2.39 -0.02 2.06 16 48 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 49 H 0.10 1.06 6.48 -2.39 -0.02 1.04 16 50 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 51 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 52 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 53 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -70.68 392.15 3.37 -67.31 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 0.88 Total: 17.92 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: 6.42 Total: 12.66 kcal Atomic # 7 Polarization: -104.25 SS G_CDS: -4.79 Total: -109.04 kcal Atomic # 8 Polarization: -34.29 SS G_CDS: -1.17 Total: -35.46 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -70.68 3.37 -67.31 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982528382.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.731 kcal (2) G-P(sol) polarization free energy of solvation -70.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds