Wall clock time and date at job start Tue Mar 31 2020 20:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47046 * 2 1 4 4 O 1.42899 * 109.47205 * 120.00411 * 2 1 3 5 5 C 1.42898 * 113.99694 * 270.00080 * 4 2 1 6 6 C 1.54241 * 108.89395 * 271.39279 * 5 4 2 7 7 C 1.50557 * 108.48357 * 159.18098 * 6 5 4 8 8 C 1.54071 * 112.41520 * 94.26609 * 7 6 5 9 9 C 1.54064 * 112.81376 * 318.28226 * 8 7 6 10 10 C 1.50466 * 112.49897 * 318.28221 * 9 8 7 11 11 C 1.45548 * 108.89134 * 148.60658 * 5 4 2 12 12 C 1.50706 * 109.46691 * 240.00440 * 2 1 3 13 13 O 1.21285 * 119.99799 * 250.44741 * 12 2 1 14 14 N 1.34774 * 120.00154 * 70.45367 * 12 2 1 15 15 C 1.49762 * 127.90193 * 354.55191 * 14 12 2 16 16 C 1.56017 * 105.31914 * 182.13221 * 15 14 12 17 17 H 1.08997 * 116.89573 * 159.53664 * 16 15 14 18 18 C 1.57079 * 99.60750 * 33.12773 * 16 15 14 19 19 C 1.49293 * 126.94445 * 175.31575 * 14 12 2 20 20 H 1.09006 * 116.14875 * 15.84795 * 19 14 12 21 21 C 1.56011 * 104.09228 * 246.69936 * 19 14 12 22 22 N 1.47862 * 105.10876 * 287.92103 * 21 19 14 23 23 C 1.36933 * 126.95051 * 182.02613 * 22 21 19 24 24 H 1.08004 * 120.00325 * 180.02562 * 23 22 21 25 25 C 1.38811 * 119.99872 * 0.02562 * 23 22 21 26 26 N 1.31617 * 120.00050 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 120.00305 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.46668 * 359.97438 * 27 25 23 29 29 H 1.48498 * 109.47110 * 119.99911 * 27 25 23 30 30 H 1.48500 * 109.46986 * 239.99932 * 27 25 23 31 31 H 1.08994 * 109.47244 * 304.92706 * 1 2 3 32 32 H 1.08996 * 109.47196 * 64.93081 * 1 2 3 33 33 H 1.09002 * 109.47020 * 184.92673 * 1 2 3 34 34 H 1.08995 * 108.87591 * 30.00305 * 5 4 2 35 35 H 1.09007 * 109.62777 * 278.97628 * 6 5 4 36 36 H 1.08996 * 109.62733 * 39.55654 * 6 5 4 37 37 H 1.09004 * 108.92035 * 333.51039 * 7 6 5 38 38 H 1.08997 * 108.83921 * 214.96685 * 7 6 5 39 39 H 1.08996 * 108.81328 * 197.41899 * 8 7 6 40 40 H 1.09000 * 108.72271 * 79.07827 * 8 7 6 41 41 H 1.09004 * 108.87583 * 197.50367 * 9 8 7 42 42 H 1.08999 * 108.80118 * 79.00761 * 9 8 7 43 43 H 1.08999 * 109.62951 * 334.44821 * 10 9 8 44 44 H 1.08999 * 109.79385 * 213.96396 * 10 9 8 45 45 H 1.08995 * 108.89269 * 303.43630 * 11 5 4 46 46 H 1.08999 * 108.89812 * 62.03130 * 11 5 4 47 47 H 1.09001 * 109.93968 * 63.28965 * 15 14 12 48 48 H 1.08998 * 110.48323 * 301.24717 * 15 14 12 49 49 H 1.08998 * 112.36972 * 191.71843 * 18 16 15 50 50 H 1.09004 * 112.44629 * 64.29723 * 18 16 15 51 51 H 1.08997 * 110.31961 * 46.83204 * 21 19 14 52 52 H 1.09008 * 110.31425 * 169.01470 * 21 19 14 53 53 H 0.97003 * 120.00265 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2001 0.1828 2.2940 6 6 3.6324 0.7532 2.2477 7 6 3.6766 2.0015 3.0882 8 6 4.1430 1.7227 4.5299 9 6 3.5262 0.4401 5.1199 10 6 2.0679 0.2933 4.7798 11 6 1.9457 -0.5746 3.5106 12 6 2.0323 -0.7104 -1.2306 13 8 2.5658 -1.7949 -1.1294 14 7 1.8887 -0.1405 -2.4435 15 6 1.1659 1.1259 -2.7852 16 6 1.2818 1.2612 -4.3352 17 1 0.5552 1.9059 -4.8295 18 6 1.2568 -0.2580 -4.7336 19 6 2.4105 -0.6551 -3.7441 20 1 2.7243 -1.6989 -3.7566 21 6 3.4861 0.3941 -4.1638 22 7 2.7193 1.5931 -4.5645 23 6 3.2251 2.7699 -5.0487 24 1 2.5577 3.5786 -5.3077 25 6 4.5956 2.9234 -5.2066 26 7 5.4090 1.9381 -4.8905 27 14 5.2859 4.5290 -5.8664 28 1 4.1711 5.4701 -6.1434 29 1 6.1997 5.1258 -4.8594 30 1 6.0353 4.2670 -7.1213 31 1 -0.3633 0.5883 0.8425 32 1 -0.3633 0.4354 -0.9308 33 1 -0.3633 -1.0239 0.0883 34 1 1.4897 1.0074 2.2365 35 1 4.3324 0.0177 2.6444 36 1 3.8966 0.9963 1.2185 37 1 2.6801 2.4423 3.1189 38 1 4.3621 2.7123 2.6270 39 1 3.8647 2.5682 5.1590 40 1 5.2286 1.6247 4.5337 41 1 3.6349 0.4630 6.2043 42 1 4.0678 -0.4217 4.7298 43 1 1.6344 1.2761 4.5944 44 1 1.5431 -0.1885 5.6047 45 1 0.9395 -0.9909 3.4632 46 1 2.6632 -1.3927 3.5737 47 1 1.6465 1.9722 -2.2943 48 1 0.1193 1.0597 -2.4883 49 1 1.5313 -0.4180 -5.7762 50 1 0.3112 -0.7386 -4.4825 51 1 4.1378 0.6257 -3.3213 52 1 4.0713 0.0207 -5.0043 53 1 6.3667 2.0454 -5.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032617950.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:19 Heat of formation + Delta-G solvation = -54.073831 kcal Electronic energy + Delta-G solvation = -31151.774630 eV Core-core repulsion = 27216.923606 eV Total energy + Delta-G solvation = -3934.851024 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.67649 -40.69571 -39.38413 -37.62530 -35.46683 -33.83766 -33.16684 -32.69448 -31.43071 -30.34633 -30.24932 -26.99477 -26.33963 -25.68772 -25.17734 -24.25877 -22.07630 -21.74689 -21.37558 -20.19195 -20.12663 -18.90492 -18.38830 -17.76107 -17.29184 -16.93639 -16.62029 -16.15872 -15.93312 -15.70776 -15.49895 -15.15110 -15.01911 -14.54140 -14.29712 -14.00397 -13.96210 -13.84247 -13.58584 -13.57512 -13.33036 -13.10592 -13.08641 -12.97239 -12.77175 -12.75487 -12.45672 -12.32469 -12.24315 -12.12683 -12.08043 -11.99442 -11.86818 -11.52979 -11.46808 -11.44109 -11.28453 -11.20769 -10.90736 -10.73132 -10.43049 -9.57347 -8.91667 -7.84588 -5.20621 1.46850 1.47123 1.53339 1.57639 1.71532 2.48210 2.72801 3.30184 3.35183 3.49337 3.61918 3.75343 3.79123 3.87970 3.89296 3.97322 4.01285 4.07774 4.14907 4.19190 4.20479 4.26710 4.34472 4.38458 4.42628 4.51584 4.63116 4.69806 4.74974 4.80878 4.88373 4.90843 4.92247 4.94871 5.01332 5.08247 5.12881 5.17827 5.18019 5.23476 5.25846 5.28371 5.29370 5.33700 5.41627 5.44885 5.50692 5.54830 5.64667 6.09031 6.17380 6.61165 7.02162 7.13672 7.70872 8.41330 9.26784 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.012231 B = 0.003315 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.697078 B = 8443.826460 C = 9926.983152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.082 3.918 3 H 0.086 0.914 4 O -0.383 6.383 5 C 0.094 3.906 6 C -0.140 4.140 7 C -0.115 4.115 8 C -0.115 4.115 9 C -0.123 4.123 10 C -0.103 4.103 11 C -0.119 4.119 12 C 0.522 3.478 13 O -0.586 6.586 14 N -0.610 5.610 15 C 0.089 3.911 16 C 0.136 3.864 17 H 0.142 0.858 18 C -0.128 4.128 19 C 0.097 3.903 20 H 0.106 0.894 21 C 0.189 3.811 22 N -0.616 5.616 23 C -0.226 4.226 24 H 0.099 0.901 25 C -0.073 4.073 26 N -0.959 5.959 27 Si 0.976 3.024 28 H -0.255 1.255 29 H -0.301 1.301 30 H -0.299 1.299 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.037 0.963 37 H 0.074 0.926 38 H 0.055 0.945 39 H 0.075 0.925 40 H 0.053 0.947 41 H 0.074 0.926 42 H 0.048 0.952 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.073 0.927 46 H 0.054 0.946 47 H 0.057 0.943 48 H 0.110 0.890 49 H 0.081 0.919 50 H 0.104 0.896 51 H -0.006 1.006 52 H 0.017 0.983 53 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.289 0.467 16.937 22.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.021 3.979 3 H 0.104 0.896 4 O -0.302 6.302 5 C 0.038 3.962 6 C -0.178 4.178 7 C -0.153 4.153 8 C -0.153 4.153 9 C -0.160 4.160 10 C -0.140 4.140 11 C -0.156 4.156 12 C 0.311 3.689 13 O -0.466 6.466 14 N -0.345 5.345 15 C -0.034 4.034 16 C 0.030 3.970 17 H 0.160 0.840 18 C -0.167 4.167 19 C -0.006 4.006 20 H 0.124 0.876 21 C 0.063 3.937 22 N -0.341 5.341 23 C -0.355 4.355 24 H 0.117 0.883 25 C -0.266 4.266 26 N -0.608 5.608 27 Si 0.805 3.195 28 H -0.179 1.179 29 H -0.229 1.229 30 H -0.226 1.226 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.055 0.945 37 H 0.093 0.907 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.072 0.928 41 H 0.093 0.907 42 H 0.067 0.933 43 H 0.095 0.905 44 H 0.103 0.897 45 H 0.092 0.908 46 H 0.073 0.927 47 H 0.075 0.925 48 H 0.128 0.872 49 H 0.099 0.901 50 H 0.123 0.877 51 H 0.012 0.988 52 H 0.035 0.965 53 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -13.756 -0.182 17.050 21.909 hybrid contribution 1.805 0.627 -0.695 2.033 sum -11.952 0.445 16.355 20.262 Atomic orbital electron populations 1.22251 0.90708 1.03856 1.04987 1.21856 0.96966 0.95309 0.83775 0.89622 1.88077 1.86684 1.35765 1.19664 1.21297 0.95602 0.93240 0.86093 1.21863 0.97868 0.98789 0.99247 1.21277 1.02415 0.96087 0.95489 1.21915 1.00061 0.98437 0.94849 1.21388 0.96036 0.97530 1.01048 1.21217 0.96754 1.00246 0.95778 1.20549 1.02734 0.99054 0.93310 1.20696 0.78729 0.85268 0.84168 1.90638 1.46424 1.23177 1.86362 1.49652 1.53882 1.25415 1.05513 1.23722 0.96734 0.84137 0.98762 1.23627 0.86658 0.94843 0.91850 0.84036 1.24065 0.97465 0.96907 0.98279 1.24129 0.96453 0.97539 0.82487 0.87620 1.21490 0.90932 0.85926 0.95374 1.45517 1.01648 1.11961 1.74949 1.19599 0.90890 0.91212 1.33767 0.88302 1.25673 0.96817 1.01001 1.03070 1.70180 1.02064 1.32988 1.55599 0.85033 0.78360 0.79444 0.76657 1.17914 1.22900 1.22607 0.88854 0.89226 0.91856 0.90627 0.92019 0.94460 0.90702 0.92614 0.90628 0.92795 0.90686 0.93290 0.90514 0.89716 0.90816 0.92698 0.92494 0.87219 0.90052 0.87726 0.98821 0.96526 0.94859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.28 9.43 71.98 0.68 -2.60 16 2 C 0.08 2.42 2.28 29.85 0.07 2.49 16 3 H 0.09 2.43 7.57 -2.39 -0.02 2.41 16 4 O -0.38 -12.12 9.09 -130.15 -1.18 -13.31 16 5 C 0.09 2.21 1.92 28.74 0.06 2.27 16 6 C -0.14 -3.58 5.18 30.22 0.16 -3.42 16 7 C -0.12 -2.24 5.32 30.17 0.16 -2.08 16 8 C -0.12 -1.83 5.85 31.32 0.18 -1.64 16 9 C -0.12 -1.82 5.32 30.13 0.16 -1.66 16 10 C -0.10 -1.40 5.61 30.20 0.17 -1.23 16 11 C -0.12 -2.31 4.82 28.74 0.14 -2.17 16 12 C 0.52 20.25 7.24 87.66 0.63 20.88 16 13 O -0.59 -28.02 16.87 15.78 0.27 -27.75 16 14 N -0.61 -22.25 3.01 -763.43 -2.30 -24.55 16 15 C 0.09 2.67 5.72 86.79 0.50 3.16 16 16 C 0.14 4.48 5.53 46.93 0.26 4.74 16 17 H 0.14 3.76 8.14 -2.39 -0.02 3.74 16 18 C -0.13 -3.94 6.82 33.46 0.23 -3.71 16 19 C 0.10 3.86 5.20 46.93 0.24 4.10 16 20 H 0.11 4.29 8.04 -2.38 -0.02 4.27 16 21 C 0.19 9.53 4.76 87.16 0.41 9.95 16 22 N -0.62 -29.06 3.02 -648.56 -1.96 -31.01 16 23 C -0.23 -11.74 10.37 84.03 0.87 -10.87 16 24 H 0.10 4.69 7.83 -2.91 -0.02 4.67 16 25 C -0.07 -4.09 5.49 84.86 0.47 -3.62 16 26 N -0.96 -58.73 10.56 21.65 0.23 -58.50 16 27 Si 0.98 44.93 29.55 68.60 2.03 46.96 16 28 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 29 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 30 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 31 H 0.09 1.40 7.98 -2.39 -0.02 1.38 16 32 H 0.09 1.55 5.44 -2.39 -0.01 1.54 16 33 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.08 1.45 6.91 -2.39 -0.02 1.43 16 35 H 0.06 1.68 6.96 -2.38 -0.02 1.66 16 36 H 0.04 1.17 7.81 -2.39 -0.02 1.15 16 37 H 0.07 1.23 6.63 -2.39 -0.02 1.21 16 38 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 42 H 0.05 0.87 6.62 -2.39 -0.02 0.86 16 43 H 0.08 0.92 6.98 -2.39 -0.02 0.91 16 44 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.05 1.25 7.46 -2.39 -0.02 1.23 16 47 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 48 H 0.11 2.23 6.06 -2.39 -0.01 2.21 16 49 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 50 H 0.10 2.51 8.14 -2.38 -0.02 2.49 16 51 H -0.01 -0.39 7.67 -2.39 -0.02 -0.40 16 52 H 0.02 0.95 7.46 -2.38 -0.02 0.93 16 53 H 0.24 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -76.17 395.54 3.34 -72.83 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: 0.88 Total: 20.75 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: 5.38 Total: 14.59 kcal Atomic # 7 Polarization: -110.03 SS G_CDS: -4.03 Total: -114.06 kcal Atomic # 8 Polarization: -40.14 SS G_CDS: -0.92 Total: -41.06 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -76.17 3.34 -72.83 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032617950.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.752 kcal (2) G-P(sol) polarization free energy of solvation -76.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds