Wall clock time and date at job start Tue Mar 31 2020 19:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47304 * 2 1 4 4 C 1.50699 * 109.47079 * 239.99589 * 2 1 3 5 5 O 1.21280 * 120.00441 * 274.69911 * 4 2 1 6 6 N 1.34778 * 119.99585 * 94.70305 * 4 2 1 7 7 C 1.46943 * 120.55842 * 174.57654 * 6 4 2 8 8 C 1.53315 * 108.69627 * 125.78639 * 7 6 4 9 9 C 1.52273 * 109.41256 * 53.52584 * 8 7 6 10 10 C 1.54532 * 110.15740 * 62.81638 * 9 8 7 11 11 C 1.55018 * 101.52926 * 153.27995 * 10 9 8 12 12 N 1.47483 * 104.90108 * 323.61681 * 11 10 9 13 13 C 1.36935 * 125.66268 * 204.04086 * 12 11 10 14 14 H 1.08009 * 119.99829 * 179.97438 * 13 12 11 15 15 C 1.38806 * 120.00253 * 359.97159 * 13 12 11 16 16 N 1.31628 * 119.99862 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00161 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47347 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47131 * 119.99808 * 17 15 13 20 20 H 1.48506 * 109.46978 * 239.99946 * 17 15 13 21 21 C 1.47181 * 108.67474 * 24.01569 * 12 11 10 22 22 C 1.52273 * 111.27282 * 300.34518 * 9 8 7 23 23 C 1.46924 * 120.56651 * 354.60475 * 6 4 2 24 24 C 1.53003 * 109.47090 * 119.99984 * 2 1 3 25 25 H 1.08999 * 109.82410 * 60.56706 * 24 2 1 26 26 C 1.54383 * 109.82838 * 299.58909 * 24 2 1 27 27 C 1.55312 * 102.24840 * 219.12823 * 26 24 2 28 28 C 1.54944 * 100.94480 * 34.13449 * 27 26 24 29 29 O 1.43240 * 109.83259 * 181.45245 * 24 2 1 30 30 H 1.09000 * 109.47137 * 65.02758 * 1 2 3 31 31 H 1.08999 * 109.47212 * 185.02352 * 1 2 3 32 32 H 1.08995 * 109.47359 * 305.02096 * 1 2 3 33 33 H 1.08998 * 109.60150 * 6.02667 * 7 6 4 34 34 H 1.09000 * 109.60196 * 245.54638 * 7 6 4 35 35 H 1.08998 * 109.48183 * 293.54712 * 8 7 6 36 36 H 1.08997 * 109.48131 * 173.50738 * 8 7 6 37 37 H 1.08999 * 111.01535 * 271.33872 * 10 9 8 38 38 H 1.09003 * 111.01266 * 35.21828 * 10 9 8 39 39 H 1.08999 * 110.35814 * 82.46908 * 11 10 9 40 40 H 1.09001 * 110.35688 * 204.76311 * 11 10 9 41 41 H 0.97001 * 119.99916 * 179.97438 * 16 15 13 42 42 H 1.09008 * 109.90800 * 239.14175 * 21 12 11 43 43 H 1.08999 * 109.90900 * 117.87873 * 21 12 11 44 44 H 1.08993 * 109.48584 * 179.62750 * 22 9 8 45 45 H 1.09008 * 109.47920 * 299.66314 * 22 9 8 46 46 H 1.09002 * 109.59135 * 353.96868 * 23 6 4 47 47 H 1.09000 * 109.59995 * 114.27714 * 23 6 4 48 48 H 1.09001 * 110.84933 * 337.31588 * 26 24 2 49 49 H 1.08997 * 110.84946 * 100.94099 * 26 24 2 50 50 H 1.08993 * 111.12413 * 276.20946 * 27 26 24 51 51 H 1.09001 * 111.12162 * 152.05411 * 27 26 24 52 52 H 1.08993 * 110.31086 * 204.63721 * 28 27 26 53 53 H 1.09000 * 110.39679 * 82.50766 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.1533 -1.9172 -1.2270 6 7 2.3471 -0.0048 -2.3347 7 6 2.9489 -0.6687 -3.4992 8 6 2.1011 -0.3537 -4.7371 9 6 1.9356 1.1545 -4.8668 10 6 3.3112 1.8245 -5.0835 11 6 2.9124 3.1080 -5.8558 12 7 1.7984 2.6944 -6.7293 13 6 1.4247 3.3118 -7.8930 14 1 0.5911 2.9295 -8.4636 15 6 2.1170 4.4291 -8.3393 16 7 3.1325 4.8953 -7.6436 17 14 1.6067 5.2717 -9.9264 18 1 0.4447 4.5582 -10.5143 19 1 1.2307 6.6796 -9.6406 20 1 2.7396 5.2470 -10.8863 21 6 1.1554 1.5074 -6.1429 22 6 1.2528 1.7429 -3.6394 23 6 2.0949 1.4414 -2.3942 24 6 2.0399 -0.7213 1.2493 25 1 1.6881 -1.7529 1.2500 26 6 1.5384 0.0061 2.5153 27 6 2.7717 -0.0803 3.4553 28 6 3.9299 0.0217 2.4311 29 8 3.4719 -0.6963 1.2743 30 1 -0.3633 0.4339 -0.9316 31 1 -0.3633 -1.0237 0.0900 32 1 -0.3634 0.5897 0.8415 33 1 2.9703 -1.7461 -3.3353 34 1 3.9635 -0.2988 -3.6472 35 1 1.1209 -0.8194 -4.6345 36 1 2.5973 -0.7426 -5.6262 37 1 3.7801 2.0713 -4.1310 38 1 3.9632 1.1923 -5.6863 39 1 2.5829 3.8812 -5.1618 40 1 3.7502 3.4664 -6.4539 41 1 3.6165 5.6758 -7.9557 42 1 1.1992 0.6759 -6.8465 43 1 0.1183 1.7320 -5.8938 44 1 1.1553 2.8217 -3.7598 45 1 0.2639 1.2988 -3.5257 46 1 1.5533 1.7551 -1.5018 47 1 3.0431 1.9758 -2.4530 48 1 1.2913 1.0444 2.2940 49 1 0.6836 -0.5135 2.9482 50 1 2.7971 -1.0334 3.9835 51 1 2.7915 0.7551 4.1552 52 1 4.8312 -0.4421 2.8319 53 1 4.1222 1.0642 2.1777 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035227855.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:32 Heat of formation + Delta-G solvation = -80.159319 kcal Electronic energy + Delta-G solvation = -31083.291729 eV Core-core repulsion = 27147.309553 eV Total energy + Delta-G solvation = -3935.982176 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.81754 -40.64663 -39.56826 -37.17418 -35.19948 -34.62961 -32.93824 -32.41359 -32.03962 -30.36369 -29.01926 -28.31047 -26.29402 -25.37208 -24.45948 -23.87691 -22.78558 -22.04804 -21.84816 -20.44840 -19.24631 -18.68053 -18.21329 -17.49695 -17.12372 -16.89738 -16.77375 -16.33637 -16.06654 -15.68559 -15.48378 -15.11003 -14.95382 -14.61049 -14.40970 -14.18621 -14.06131 -13.94460 -13.73169 -13.52508 -13.35303 -13.17309 -12.99884 -12.90899 -12.77669 -12.54837 -12.44565 -12.37848 -12.19968 -12.16740 -12.03212 -11.97453 -11.94256 -11.67484 -11.60889 -11.53468 -11.20901 -11.00802 -10.71973 -10.59430 -10.45602 -9.58695 -8.84677 -7.75614 -5.18943 1.46590 1.47174 1.57419 1.66601 2.02279 2.50231 2.89863 3.33265 3.46302 3.58541 3.65719 3.69793 3.74307 3.76324 3.95616 4.00870 4.11018 4.14794 4.19609 4.21147 4.33206 4.37415 4.44553 4.51472 4.58234 4.65128 4.65711 4.73202 4.76534 4.79835 4.82119 4.84228 4.86901 4.90384 4.95933 4.98791 5.03342 5.04996 5.08272 5.09614 5.22355 5.25092 5.32355 5.40081 5.44534 5.49041 5.61721 5.71392 5.87312 6.14432 6.34207 6.45813 7.13905 7.20919 7.81500 8.45803 9.25999 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.024714 B = 0.002481 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.671651 B =11283.174803 C =11521.025457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.119 4.119 3 H 0.111 0.889 4 C 0.522 3.478 5 O -0.586 6.586 6 N -0.607 5.607 7 C 0.118 3.882 8 C -0.104 4.104 9 C -0.057 4.057 10 C -0.120 4.120 11 C 0.160 3.840 12 N -0.625 5.625 13 C -0.236 4.236 14 H 0.076 0.924 15 C -0.067 4.067 16 N -0.947 5.947 17 Si 0.977 3.023 18 H -0.269 1.269 19 H -0.291 1.291 20 H -0.292 1.292 21 C 0.142 3.858 22 C -0.107 4.107 23 C 0.111 3.889 24 C 0.093 3.907 25 H 0.067 0.933 26 C -0.142 4.142 27 C -0.150 4.150 28 C 0.037 3.963 29 O -0.407 6.407 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.100 0.900 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.056 0.944 39 H -0.008 1.008 40 H 0.065 0.935 41 H 0.246 0.754 42 H 0.019 0.981 43 H 0.020 0.980 44 H 0.068 0.932 45 H 0.071 0.929 46 H 0.112 0.888 47 H 0.076 0.924 48 H 0.097 0.903 49 H 0.099 0.901 50 H 0.078 0.922 51 H 0.105 0.895 52 H 0.086 0.914 53 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.232 -8.210 23.922 25.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.141 4.141 3 H 0.129 0.871 4 C 0.312 3.688 5 O -0.466 6.466 6 N -0.339 5.339 7 C -0.005 4.005 8 C -0.143 4.143 9 C -0.057 4.057 10 C -0.158 4.158 11 C 0.035 3.965 12 N -0.351 5.351 13 C -0.365 4.365 14 H 0.094 0.906 15 C -0.259 4.259 16 N -0.597 5.597 17 Si 0.806 3.194 18 H -0.194 1.194 19 H -0.218 1.218 20 H -0.219 1.219 21 C 0.017 3.983 22 C -0.146 4.146 23 C -0.011 4.011 24 C 0.035 3.965 25 H 0.085 0.915 26 C -0.179 4.179 27 C -0.187 4.187 28 C -0.039 4.039 29 O -0.327 6.327 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.118 0.882 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.075 0.925 39 H 0.010 0.990 40 H 0.083 0.917 41 H 0.056 0.944 42 H 0.037 0.963 43 H 0.038 0.962 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.130 0.870 47 H 0.094 0.906 48 H 0.116 0.884 49 H 0.118 0.882 50 H 0.096 0.904 51 H 0.124 0.876 52 H 0.104 0.896 53 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.002 -8.775 23.628 25.383 hybrid contribution -0.065 0.659 -1.381 1.532 sum -3.067 -8.115 22.247 23.879 Atomic orbital electron populations 1.21729 0.90087 1.03326 1.04321 1.21845 0.99206 1.01182 0.91837 0.87061 1.21060 0.75891 0.87071 0.84736 1.90628 1.55717 1.16192 1.84061 1.48194 1.61448 1.09528 1.14738 1.21523 0.96403 0.98261 0.84290 1.21675 1.00528 0.94312 0.97781 1.20887 0.95618 0.94983 0.94235 1.22917 0.95814 0.97220 0.99897 1.21675 0.91489 0.92389 0.90959 1.44850 1.35336 1.31016 1.23884 1.19459 1.11508 1.07443 0.98079 0.90574 1.25581 0.98700 0.99371 1.02296 1.70074 1.23569 1.25948 1.40122 0.85021 0.77354 0.77908 0.79119 1.19370 1.21839 1.21933 1.21434 0.94897 0.88817 0.93126 1.21664 0.98803 1.01046 0.93049 1.21961 1.00708 0.79248 0.99210 1.22670 0.80691 0.99114 0.93980 0.91477 1.23222 0.99326 1.02396 0.93003 1.23269 0.93284 1.04169 0.98028 1.23613 0.98340 0.96864 0.85114 1.88511 1.21091 1.76390 1.46749 0.91589 0.92495 0.88157 0.90312 0.90956 0.91734 0.90709 0.89948 0.92527 0.98993 0.91682 0.94424 0.96250 0.96166 0.91324 0.91057 0.87045 0.90597 0.88435 0.88209 0.90359 0.87622 0.89614 0.91467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 8.75 71.98 0.63 -1.26 16 2 C -0.12 -2.20 1.57 -11.54 -0.02 -2.22 16 3 H 0.11 1.68 6.18 -2.38 -0.01 1.66 16 4 C 0.52 14.15 6.39 87.66 0.56 14.71 16 5 O -0.59 -20.59 15.67 -3.03 -0.05 -20.64 16 6 N -0.61 -15.47 2.96 -818.39 -2.42 -17.89 16 7 C 0.12 3.20 6.15 86.40 0.53 3.73 16 8 C -0.10 -2.94 4.72 30.46 0.14 -2.80 16 9 C -0.06 -1.82 0.55 -51.91 -0.03 -1.85 16 10 C -0.12 -4.31 4.92 31.81 0.16 -4.15 16 11 C 0.16 7.69 5.56 86.88 0.48 8.18 16 12 N -0.62 -32.04 3.40 -692.47 -2.36 -34.40 16 13 C -0.24 -13.29 10.28 84.03 0.86 -12.43 16 14 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 15 C -0.07 -3.81 5.49 84.86 0.47 -3.34 16 16 N -0.95 -56.23 10.09 21.65 0.22 -56.01 16 17 Si 0.98 45.85 29.55 68.60 2.03 47.88 16 18 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 19 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 20 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 21 C 0.14 5.85 6.42 86.48 0.56 6.40 16 22 C -0.11 -2.90 4.74 30.46 0.14 -2.76 16 23 C 0.11 2.42 5.82 86.40 0.50 2.92 16 24 C 0.09 1.76 2.75 31.06 0.09 1.85 16 25 H 0.07 1.54 7.85 -2.39 -0.02 1.52 16 26 C -0.14 -1.43 5.55 31.86 0.18 -1.26 16 27 C -0.15 -1.45 7.16 32.05 0.23 -1.22 16 28 C 0.04 0.55 7.78 72.65 0.56 1.12 16 29 O -0.41 -9.69 10.69 -148.98 -1.59 -11.28 16 30 H 0.07 0.94 8.13 -2.39 -0.02 0.92 16 31 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.10 0.78 7.23 -2.39 -0.02 0.76 16 33 H 0.08 2.32 6.99 -2.39 -0.02 2.30 16 34 H 0.07 1.91 7.55 -2.39 -0.02 1.89 16 35 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.07 2.12 8.11 -2.39 -0.02 2.10 16 37 H 0.08 2.55 6.08 -2.39 -0.01 2.54 16 38 H 0.06 2.07 8.01 -2.39 -0.02 2.05 16 39 H -0.01 -0.40 7.74 -2.39 -0.02 -0.42 16 40 H 0.07 3.65 5.88 -2.39 -0.01 3.64 16 41 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 42 H 0.02 0.81 7.78 -2.38 -0.02 0.79 16 43 H 0.02 0.83 7.83 -2.39 -0.02 0.81 16 44 H 0.07 2.10 7.47 -2.39 -0.02 2.08 16 45 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 46 H 0.11 1.78 5.50 -2.39 -0.01 1.77 16 47 H 0.08 1.68 6.48 -2.39 -0.02 1.66 16 48 H 0.10 0.68 7.56 -2.39 -0.02 0.66 16 49 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 50 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 51 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 52 H 0.09 1.18 8.14 -2.39 -0.02 1.17 16 53 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -73.89 391.93 2.75 -71.13 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: 0.88 Total: 15.59 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: 6.05 Total: 5.62 kcal Atomic # 7 Polarization: -103.75 SS G_CDS: -4.56 Total: -108.31 kcal Atomic # 8 Polarization: -30.28 SS G_CDS: -1.64 Total: -31.92 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -73.89 2.75 -71.13 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035227855.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.027 kcal (2) G-P(sol) polarization free energy of solvation -73.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds