Wall clock time and date at job start Tue Mar 31 2020 19:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47235 * 2 1 4 4 C 1.50700 * 109.47093 * 120.00816 * 2 1 3 5 5 O 1.21275 * 120.00029 * 97.12044 * 4 2 1 6 6 N 1.34778 * 119.99417 * 277.11851 * 4 2 1 7 7 C 1.46938 * 120.56160 * 175.37039 * 6 4 2 8 8 C 1.53315 * 108.69845 * 125.77795 * 7 6 4 9 9 C 1.52265 * 109.41571 * 53.53158 * 8 7 6 10 10 C 1.54516 * 110.21262 * 177.79047 * 9 8 7 11 11 C 1.55237 * 101.44294 * 206.61105 * 10 9 8 12 12 N 1.47481 * 104.78994 * 36.65962 * 11 10 9 13 13 C 1.36944 * 125.65887 * 155.93430 * 12 11 10 14 14 H 1.07997 * 119.99800 * 211.18470 * 13 12 11 15 15 C 1.38806 * 120.00143 * 31.18011 * 13 12 11 16 16 N 1.31621 * 120.00192 * 199.21768 * 15 13 12 17 17 Si 1.86804 * 119.99802 * 19.21648 * 15 13 12 18 18 H 1.48497 * 109.47406 * 274.85578 * 17 15 13 19 19 H 1.48503 * 109.47002 * 34.86224 * 17 15 13 20 20 H 1.48510 * 109.46788 * 154.85625 * 17 15 13 21 21 C 1.47174 * 108.67867 * 335.66799 * 12 11 10 22 22 C 1.52275 * 111.26907 * 300.35043 * 9 8 7 23 23 C 1.46922 * 120.56689 * 355.39272 * 6 4 2 24 24 C 1.53001 * 109.46619 * 240.00355 * 2 1 3 25 25 H 1.08998 * 109.87236 * 298.99185 * 24 2 1 26 26 C 1.54097 * 109.87990 * 60.00030 * 24 2 1 27 27 C 1.54821 * 104.19017 * 121.44844 * 26 24 2 28 28 C 1.55000 * 102.08834 * 20.88243 * 27 26 24 29 29 O 1.43749 * 109.87559 * 177.83063 * 24 2 1 30 30 H 1.09004 * 109.47047 * 303.25593 * 1 2 3 31 31 H 1.09003 * 109.47363 * 63.24976 * 1 2 3 32 32 H 1.08995 * 109.47555 * 183.25513 * 1 2 3 33 33 H 1.09005 * 109.59900 * 6.01791 * 7 6 4 34 34 H 1.08997 * 109.72843 * 245.62347 * 7 6 4 35 35 H 1.09002 * 109.48193 * 293.54057 * 8 7 6 36 36 H 1.09000 * 109.47609 * 173.51285 * 8 7 6 37 37 H 1.09006 * 111.01180 * 324.83971 * 10 9 8 38 38 H 1.08997 * 111.01674 * 88.66910 * 10 9 8 39 39 H 1.09002 * 110.47870 * 277.80369 * 11 10 9 40 40 H 1.08995 * 110.33026 * 155.44547 * 11 10 9 41 41 H 0.97003 * 119.99979 * 180.02562 * 16 15 13 42 42 H 1.09001 * 109.90793 * 121.10293 * 21 12 11 43 43 H 1.09002 * 109.90732 * 242.17546 * 21 12 11 44 44 H 1.09003 * 109.47803 * 179.62063 * 22 9 8 45 45 H 1.09001 * 109.47958 * 299.64754 * 22 9 8 46 46 H 1.09000 * 109.60176 * 353.98229 * 23 6 4 47 47 H 1.09006 * 109.59624 * 114.28707 * 23 6 4 48 48 H 1.08994 * 110.49352 * 240.12496 * 26 24 2 49 49 H 1.09004 * 110.49014 * 2.64684 * 26 24 2 50 50 H 1.09002 * 110.90647 * 139.07439 * 27 26 24 51 51 H 1.08996 * 110.90869 * 262.65037 * 27 26 24 52 52 H 1.09004 * 110.61699 * 81.47446 * 28 27 26 53 53 H 1.08998 * 110.61794 * 204.31538 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 8 2.3572 -1.8773 1.1666 6 7 2.1205 -0.0494 2.4015 7 6 2.5116 -0.7544 3.6299 8 6 3.7052 -0.0244 4.2568 9 6 3.3597 1.4474 4.4385 10 6 4.5304 2.1903 5.1205 11 6 3.7872 3.3604 5.8194 12 7 2.5110 2.7777 6.2741 13 6 1.7417 3.2466 7.3054 14 1 1.1490 2.5606 7.8922 15 6 1.7239 4.6037 7.5966 16 7 1.3132 5.0183 8.7764 17 14 2.2830 5.8415 6.3142 18 1 3.7585 5.9942 6.3836 19 1 1.8979 5.3620 4.9625 20 1 1.6368 7.1526 6.5770 21 6 2.1981 1.6124 5.4313 22 6 3.0246 2.1046 3.1064 23 6 1.8268 1.3885 2.4717 24 6 2.0399 -0.7212 -1.2493 25 1 1.6949 -1.7551 -1.2470 26 6 1.5314 -0.0020 -2.5138 27 6 2.8226 0.3897 -3.2728 28 6 3.8622 -0.5908 -2.6724 29 8 3.4764 -0.6822 -1.2841 30 1 -0.3633 0.5636 0.8594 31 1 -0.3634 0.4626 -0.9177 32 1 -0.3634 -1.0259 0.0583 33 1 2.7952 -1.7790 3.3889 34 1 1.6776 -0.7613 4.3316 35 1 4.5721 -0.1163 3.6025 36 1 3.9331 -0.4667 5.2266 37 1 5.0292 1.5496 5.8478 38 1 5.2391 2.5646 4.3818 39 1 3.6040 4.1711 5.1143 40 1 4.3643 3.7206 6.6710 41 1 1.3004 5.9667 8.9798 42 1 2.1093 0.7197 6.0504 43 1 1.2666 1.7839 4.8918 44 1 2.7759 3.1531 3.2708 45 1 3.8846 2.0351 2.4402 46 1 1.6589 1.7769 1.4672 47 1 0.9368 1.5505 3.0797 48 1 0.9235 -0.6757 -3.1175 49 1 0.9608 0.8867 -2.2438 50 1 2.7083 0.2270 -4.3446 51 1 3.0974 1.4238 -3.0652 52 1 3.7934 -1.5659 -3.1549 53 1 4.8702 -0.1871 -2.7675 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035227857.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:38 Heat of formation + Delta-G solvation = -81.640213 kcal Electronic energy + Delta-G solvation = -31350.785256 eV Core-core repulsion = 27414.738863 eV Total energy + Delta-G solvation = -3936.046392 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.84411 -40.69472 -39.61791 -37.23318 -35.29779 -34.72027 -33.10802 -32.75121 -32.08616 -30.67416 -28.90377 -28.18764 -26.61381 -25.40253 -24.44805 -23.78068 -23.02458 -22.45700 -21.69405 -20.48404 -19.19412 -18.96168 -18.19532 -17.47651 -17.16906 -16.89224 -16.73936 -16.60190 -16.17305 -15.87819 -15.53965 -15.19134 -14.98394 -14.69174 -14.53275 -14.46312 -14.22229 -14.12361 -13.86297 -13.55803 -13.39088 -13.29526 -13.10669 -12.89576 -12.81568 -12.71136 -12.60206 -12.38092 -12.28382 -12.21702 -12.11099 -12.01997 -11.93106 -11.68576 -11.52043 -11.48301 -11.28181 -11.13976 -10.74473 -10.62326 -10.59795 -9.60508 -8.84867 -8.20484 -5.55794 1.32631 1.38556 1.50023 1.65881 2.00407 2.42309 2.89824 3.05402 3.36459 3.44533 3.59562 3.61485 3.69517 3.78176 3.86402 3.99238 4.05601 4.10186 4.12212 4.17395 4.29868 4.34423 4.38769 4.42184 4.43782 4.56475 4.59968 4.61933 4.70992 4.73746 4.80493 4.82905 4.83145 4.86937 4.90334 4.94334 5.00822 5.01588 5.04195 5.05666 5.15636 5.21456 5.21887 5.25000 5.27355 5.36125 5.40177 5.60590 5.80374 6.02319 6.12846 6.43882 6.80967 7.19755 7.53447 8.17154 9.00410 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.018528 B = 0.002965 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.842789 B = 9440.371623 C = 9781.341750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.108 4.108 3 H 0.114 0.886 4 C 0.521 3.479 5 O -0.582 6.582 6 N -0.605 5.605 7 C 0.112 3.888 8 C -0.103 4.103 9 C -0.061 4.061 10 C -0.111 4.111 11 C 0.110 3.890 12 N -0.624 5.624 13 C -0.239 4.239 14 H 0.046 0.954 15 C -0.029 4.029 16 N -0.957 5.957 17 Si 0.950 3.050 18 H -0.273 1.273 19 H -0.259 1.259 20 H -0.307 1.307 21 C 0.142 3.858 22 C -0.114 4.114 23 C 0.105 3.895 24 C 0.091 3.909 25 H 0.056 0.944 26 C -0.147 4.147 27 C -0.149 4.149 28 C 0.034 3.966 29 O -0.400 6.400 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.054 0.946 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.094 0.906 39 H 0.023 0.977 40 H 0.032 0.968 41 H 0.263 0.737 42 H 0.024 0.976 43 H 0.032 0.968 44 H 0.070 0.930 45 H 0.081 0.919 46 H 0.111 0.889 47 H 0.072 0.928 48 H 0.090 0.910 49 H 0.099 0.901 50 H 0.099 0.901 51 H 0.081 0.919 52 H 0.061 0.939 53 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.531 -8.630 -27.726 29.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.129 4.129 3 H 0.132 0.868 4 C 0.311 3.689 5 O -0.462 6.462 6 N -0.338 5.338 7 C -0.011 4.011 8 C -0.142 4.142 9 C -0.062 4.062 10 C -0.149 4.149 11 C -0.014 4.014 12 N -0.351 5.351 13 C -0.368 4.368 14 H 0.063 0.937 15 C -0.224 4.224 16 N -0.603 5.603 17 Si 0.778 3.222 18 H -0.199 1.199 19 H -0.183 1.183 20 H -0.235 1.235 21 C 0.018 3.982 22 C -0.152 4.152 23 C -0.017 4.017 24 C 0.033 3.967 25 H 0.074 0.926 26 C -0.185 4.185 27 C -0.186 4.186 28 C -0.042 4.042 29 O -0.320 6.320 30 H 0.090 0.910 31 H 0.118 0.882 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.112 0.888 39 H 0.041 0.959 40 H 0.050 0.950 41 H 0.072 0.928 42 H 0.042 0.958 43 H 0.050 0.950 44 H 0.088 0.912 45 H 0.100 0.900 46 H 0.129 0.871 47 H 0.090 0.910 48 H 0.109 0.891 49 H 0.117 0.883 50 H 0.117 0.883 51 H 0.100 0.900 52 H 0.079 0.921 53 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.745 -9.117 -27.403 29.010 hybrid contribution -0.029 0.688 0.485 0.842 sum 2.716 -8.429 -26.918 28.337 Atomic orbital electron populations 1.21795 0.89921 1.03120 1.04860 1.21603 0.99026 1.01183 0.91115 0.86818 1.21020 0.76451 0.86614 0.84864 1.90639 1.51121 1.18925 1.85513 1.48157 1.67503 1.10126 1.07966 1.21573 0.97414 0.96628 0.85461 1.21674 0.97799 0.93281 1.01415 1.20948 0.94979 0.95597 0.94683 1.22763 0.96487 0.96249 0.99408 1.22064 0.87034 0.95945 0.96364 1.44862 1.20869 1.33344 1.36050 1.18455 1.22418 0.90950 1.04976 0.93669 1.25987 0.99350 0.98799 0.98287 1.69958 1.53102 1.15490 1.21735 0.85779 0.77954 0.77583 0.80875 1.19897 1.18315 1.23510 1.21582 0.96188 0.89353 0.91078 1.21748 0.98989 0.99350 0.95156 1.21995 0.97860 0.78683 1.03121 1.22603 0.81155 0.98519 0.94429 0.92645 1.23084 0.98745 1.01975 0.94665 1.23134 0.93966 1.00176 1.01356 1.23753 1.00068 0.99190 0.81174 1.88939 1.21192 1.95179 1.26678 0.90963 0.88175 0.92686 0.90169 0.91392 0.90883 0.90259 0.90762 0.88762 0.95918 0.94991 0.92769 0.95766 0.94997 0.91175 0.90024 0.87061 0.91005 0.89102 0.88275 0.88280 0.90035 0.92086 0.88420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 8.96 71.98 0.64 -1.22 16 2 C -0.11 -1.97 1.57 -11.54 -0.02 -1.99 16 3 H 0.11 1.74 6.17 -2.39 -0.01 1.72 16 4 C 0.52 13.75 6.56 87.66 0.57 14.32 16 5 O -0.58 -20.05 15.38 -2.99 -0.05 -20.10 16 6 N -0.61 -14.93 2.96 -818.41 -2.42 -17.36 16 7 C 0.11 2.92 6.16 86.40 0.53 3.45 16 8 C -0.10 -2.61 4.70 30.46 0.14 -2.47 16 9 C -0.06 -1.76 0.53 -51.92 -0.03 -1.78 16 10 C -0.11 -3.35 6.00 31.88 0.19 -3.16 16 11 C 0.11 4.51 4.56 86.96 0.40 4.91 16 12 N -0.62 -29.46 3.03 -692.04 -2.09 -31.56 16 13 C -0.24 -13.82 10.52 84.03 0.88 -12.93 16 14 H 0.05 2.89 8.06 -2.91 -0.02 2.87 16 15 C -0.03 -1.70 5.45 84.86 0.46 -1.24 16 16 N -0.96 -60.63 13.97 21.65 0.30 -60.33 16 17 Si 0.95 46.20 24.53 68.60 1.68 47.88 16 18 H -0.27 -12.62 7.00 99.48 0.70 -11.93 16 19 H -0.26 -11.75 6.94 99.48 0.69 -11.06 16 20 H -0.31 -15.05 7.11 99.48 0.71 -14.35 16 21 C 0.14 5.33 5.43 86.48 0.47 5.80 16 22 C -0.11 -2.80 4.78 30.46 0.15 -2.65 16 23 C 0.11 2.28 5.75 86.40 0.50 2.77 16 24 C 0.09 1.72 2.53 30.97 0.08 1.79 16 25 H 0.06 1.26 7.86 -2.39 -0.02 1.24 16 26 C -0.15 -1.54 5.99 31.59 0.19 -1.35 16 27 C -0.15 -1.45 7.15 31.90 0.23 -1.22 16 28 C 0.03 0.52 7.72 72.67 0.56 1.08 16 29 O -0.40 -9.47 10.80 -148.96 -1.61 -11.08 16 30 H 0.07 0.95 7.88 -2.39 -0.02 0.93 16 31 H 0.10 0.78 6.44 -2.39 -0.02 0.76 16 32 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.08 2.26 6.99 -2.38 -0.02 2.24 16 34 H 0.07 1.79 7.47 -2.39 -0.02 1.78 16 35 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.08 1.98 8.10 -2.39 -0.02 1.96 16 37 H 0.07 2.20 8.01 -2.38 -0.02 2.18 16 38 H 0.09 2.33 8.01 -2.39 -0.02 2.31 16 39 H 0.02 0.94 5.02 -2.39 -0.01 0.93 16 40 H 0.03 1.42 7.87 -2.39 -0.02 1.41 16 41 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 42 H 0.02 0.94 7.59 -2.39 -0.02 0.92 16 43 H 0.03 1.20 6.09 -2.39 -0.01 1.19 16 44 H 0.07 1.91 7.47 -2.39 -0.02 1.89 16 45 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.11 1.77 5.40 -2.39 -0.01 1.75 16 47 H 0.07 1.67 6.54 -2.38 -0.02 1.66 16 48 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 49 H 0.10 0.72 6.49 -2.39 -0.02 0.71 16 50 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 51 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 52 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 53 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -76.52 386.98 2.62 -73.89 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 0.86 Total: 14.54 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: 5.95 Total: 4.10 kcal Atomic # 7 Polarization: -105.02 SS G_CDS: -4.21 Total: -109.24 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -1.65 Total: -31.18 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 1.68 Total: 47.88 kcal Total: -76.52 2.62 -73.89 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035227857.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.748 kcal (2) G-P(sol) polarization free energy of solvation -76.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds