Wall clock time and date at job start Tue Mar 31 2020 19:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46552 * 2 1 4 4 C 1.50707 * 109.46739 * 240.00505 * 2 1 3 5 5 O 1.21277 * 119.99654 * 264.09346 * 4 2 1 6 6 N 1.34769 * 120.00052 * 84.09616 * 4 2 1 7 7 C 1.46936 * 120.56527 * 355.24176 * 6 4 2 8 8 C 1.53314 * 108.70179 * 125.78063 * 7 6 4 9 9 C 1.52272 * 109.41741 * 53.52672 * 8 7 6 10 10 C 1.54510 * 110.21029 * 177.79439 * 9 8 7 11 11 C 1.55243 * 101.44087 * 206.61123 * 10 9 8 12 12 N 1.47480 * 104.78866 * 36.66166 * 11 10 9 13 13 C 1.36944 * 125.66013 * 155.93153 * 12 11 10 14 14 H 1.07997 * 119.99883 * 179.69001 * 13 12 11 15 15 C 1.38810 * 119.99724 * 359.69548 * 13 12 11 16 16 N 1.31616 * 120.00249 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99840 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47004 * 179.97438 * 17 15 13 19 19 H 1.48500 * 109.47213 * 299.99519 * 17 15 13 20 20 H 1.48502 * 109.47325 * 59.99792 * 17 15 13 21 21 C 1.47170 * 108.68034 * 335.66785 * 12 11 10 22 22 C 1.52269 * 111.26993 * 300.35716 * 9 8 7 23 23 C 1.46930 * 120.56446 * 175.26450 * 6 4 2 24 24 C 1.52998 * 109.47415 * 120.00207 * 2 1 3 25 25 H 1.09006 * 109.86686 * 178.99197 * 24 2 1 26 26 C 1.54097 * 109.87561 * 300.00091 * 24 2 1 27 27 C 1.54815 * 104.18704 * 121.45804 * 26 24 2 28 28 C 1.54998 * 102.09204 * 20.87683 * 27 26 24 29 29 O 1.43744 * 109.87546 * 57.83219 * 24 2 1 30 30 H 1.09004 * 109.46972 * 186.64337 * 1 2 3 31 31 H 1.08999 * 109.47134 * 306.63394 * 1 2 3 32 32 H 1.08998 * 109.47675 * 66.63804 * 1 2 3 33 33 H 1.09000 * 109.59884 * 6.00993 * 7 6 4 34 34 H 1.09005 * 109.72748 * 245.62037 * 7 6 4 35 35 H 1.08996 * 109.47788 * 293.53941 * 8 7 6 36 36 H 1.09004 * 109.48982 * 173.51342 * 8 7 6 37 37 H 1.09008 * 111.01431 * 324.83492 * 10 9 8 38 38 H 1.08996 * 111.01545 * 88.67220 * 10 9 8 39 39 H 1.09000 * 110.48071 * 277.80215 * 11 10 9 40 40 H 1.08999 * 110.33186 * 155.44382 * 11 10 9 41 41 H 0.97003 * 120.00524 * 179.97438 * 16 15 13 42 42 H 1.09001 * 109.91033 * 121.10144 * 21 12 11 43 43 H 1.09002 * 109.90770 * 242.36460 * 21 12 11 44 44 H 1.09003 * 109.47936 * 179.61690 * 22 9 8 45 45 H 1.09010 * 109.48128 * 299.64841 * 22 9 8 46 46 H 1.08996 * 109.59344 * 353.97371 * 23 6 4 47 47 H 1.08992 * 109.59633 * 114.28886 * 23 6 4 48 48 H 1.09002 * 110.48490 * 240.13056 * 26 24 2 49 49 H 1.08997 * 110.49315 * 2.64141 * 26 24 2 50 50 H 1.08992 * 110.90837 * 139.07532 * 27 26 24 51 51 H 1.09004 * 110.90495 * 262.64550 * 27 26 24 52 52 H 1.08998 * 110.62043 * 81.47612 * 28 27 26 53 53 H 1.09000 * 110.61771 * 204.32609 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.3363 -1.8830 -1.1722 6 7 2.1437 -0.0425 -2.3959 7 6 1.6820 1.3480 -2.5073 8 6 2.8347 2.2076 -3.0391 9 6 3.3674 1.5982 -4.3289 10 6 4.4942 2.4809 -4.9107 11 6 4.3998 2.1435 -6.4231 12 7 2.9572 1.9817 -6.6834 13 6 2.3426 2.1374 -7.8972 14 1 1.2762 1.9913 -7.9852 15 6 3.0904 2.4829 -9.0145 16 7 4.3900 2.6612 -8.9072 17 14 2.2522 2.6945 -10.6704 18 1 3.2636 3.0620 -11.6938 19 1 1.5945 1.4210 -11.0587 20 1 1.2320 3.7695 -10.5751 21 6 2.2887 1.6190 -5.4235 22 6 3.8742 0.1804 -4.1018 23 6 2.7284 -0.6926 -3.5767 24 6 2.0401 -0.7213 1.2492 25 1 3.1300 -0.7407 1.2467 26 6 1.5316 -0.0022 2.5137 27 6 0.7321 -1.0892 3.2727 28 6 1.3100 -2.3960 2.6722 29 8 1.5245 -2.0626 1.2838 30 1 -0.3633 -1.0208 0.1189 31 1 -0.3633 0.6132 0.8247 32 1 -0.3634 0.4075 -0.9434 33 1 1.3770 1.7117 -1.5260 34 1 0.8383 1.4015 -3.1954 35 1 3.6327 2.2444 -2.2976 36 1 2.4745 3.2174 -3.2359 37 1 4.2962 3.5374 -4.7295 38 1 5.4646 2.1924 -4.5069 39 1 4.9307 1.2167 -6.6410 40 1 4.8033 2.9617 -7.0195 41 1 4.9126 2.9023 -9.6880 42 1 1.5274 2.3603 -5.1804 43 1 1.8339 0.6326 -5.5152 44 1 4.2415 -0.2294 -5.0427 45 1 4.6833 0.1961 -3.3714 46 1 3.1136 -1.6741 -3.3004 47 1 1.9665 -0.8027 -4.3482 48 1 2.3696 0.3464 3.1173 49 1 0.8840 0.8320 2.2439 50 1 0.9236 -1.0357 4.3443 51 1 -0.3345 -1.0035 3.0652 52 1 2.2523 -2.6562 3.1544 53 1 0.5934 -3.2118 2.7671 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035227859.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:43 Heat of formation + Delta-G solvation = -75.401097 kcal Electronic energy + Delta-G solvation = -31078.717154 eV Core-core repulsion = 27142.941310 eV Total energy + Delta-G solvation = -3935.775844 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.78964 -40.62934 -39.49215 -37.11690 -35.12962 -34.54526 -32.79141 -32.39711 -32.03060 -30.55300 -28.94037 -27.73162 -26.65020 -25.68893 -24.34109 -23.82661 -22.82733 -21.98115 -21.71445 -20.36264 -19.03245 -18.88511 -17.94640 -17.51833 -17.01192 -16.86808 -16.42409 -16.31554 -16.19239 -15.88765 -15.61871 -15.06944 -14.74121 -14.65752 -14.35989 -14.32081 -14.05992 -13.95358 -13.81947 -13.41069 -13.12564 -13.06580 -12.84769 -12.80784 -12.73265 -12.55102 -12.41163 -12.36468 -12.26680 -12.16416 -12.04015 -12.01423 -11.85883 -11.67327 -11.42809 -11.41034 -11.21037 -11.02801 -10.70784 -10.54631 -10.46694 -9.56272 -8.84044 -7.75121 -5.18945 1.45781 1.48808 1.55086 1.70278 2.02859 2.50561 3.01688 3.33400 3.52481 3.62702 3.67579 3.71775 3.80886 3.89443 3.97270 4.03626 4.09448 4.12758 4.16448 4.24180 4.31192 4.42773 4.46278 4.49104 4.64333 4.67190 4.69462 4.75115 4.76527 4.79245 4.84787 4.88504 4.89230 4.94377 4.96181 5.01642 5.04657 5.09058 5.12762 5.19757 5.26304 5.28875 5.38262 5.38607 5.45845 5.48660 5.63578 5.69651 5.86052 6.13462 6.34076 6.51449 7.13356 7.27248 7.82180 8.46527 9.26057 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.030333 B = 0.002396 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.879363 B =11683.877602 C =11767.810179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.105 4.105 3 H 0.134 0.866 4 C 0.510 3.490 5 O -0.574 6.574 6 N -0.607 5.607 7 C 0.104 3.896 8 C -0.110 4.110 9 C -0.059 4.059 10 C -0.121 4.121 11 C 0.156 3.844 12 N -0.625 5.625 13 C -0.236 4.236 14 H 0.078 0.922 15 C -0.069 4.069 16 N -0.949 5.949 17 Si 0.978 3.022 18 H -0.294 1.294 19 H -0.282 1.282 20 H -0.275 1.275 21 C 0.145 3.855 22 C -0.103 4.103 23 C 0.119 3.881 24 C 0.088 3.912 25 H 0.051 0.949 26 C -0.146 4.146 27 C -0.146 4.146 28 C 0.029 3.971 29 O -0.382 6.382 30 H 0.047 0.953 31 H 0.097 0.903 32 H 0.064 0.936 33 H 0.121 0.879 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.069 0.931 38 H 0.075 0.925 39 H -0.020 1.020 40 H 0.069 0.931 41 H 0.246 0.754 42 H 0.031 0.969 43 H 0.015 0.985 44 H 0.051 0.949 45 H 0.072 0.928 46 H 0.073 0.927 47 H 0.058 0.942 48 H 0.089 0.911 49 H 0.101 0.899 50 H 0.096 0.904 51 H 0.081 0.919 52 H 0.057 0.943 53 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.060 -0.749 27.634 28.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.126 4.126 3 H 0.151 0.849 4 C 0.300 3.700 5 O -0.452 6.452 6 N -0.340 5.340 7 C -0.017 4.017 8 C -0.148 4.148 9 C -0.059 4.059 10 C -0.159 4.159 11 C 0.031 3.969 12 N -0.351 5.351 13 C -0.365 4.365 14 H 0.096 0.904 15 C -0.261 4.261 16 N -0.599 5.599 17 Si 0.806 3.194 18 H -0.221 1.221 19 H -0.208 1.208 20 H -0.201 1.201 21 C 0.020 3.980 22 C -0.141 4.141 23 C -0.004 4.004 24 C 0.029 3.971 25 H 0.069 0.931 26 C -0.183 4.183 27 C -0.184 4.184 28 C -0.047 4.047 29 O -0.301 6.301 30 H 0.066 0.934 31 H 0.115 0.885 32 H 0.083 0.917 33 H 0.139 0.861 34 H 0.088 0.912 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.088 0.912 38 H 0.094 0.906 39 H -0.002 1.002 40 H 0.087 0.913 41 H 0.055 0.945 42 H 0.049 0.951 43 H 0.033 0.967 44 H 0.070 0.930 45 H 0.091 0.909 46 H 0.091 0.909 47 H 0.077 0.923 48 H 0.107 0.893 49 H 0.120 0.880 50 H 0.115 0.885 51 H 0.100 0.900 52 H 0.076 0.924 53 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.913 -1.456 27.270 28.170 hybrid contribution 0.186 -0.341 -1.695 1.739 sum -6.727 -1.797 25.575 26.506 Atomic orbital electron populations 1.21722 0.90988 1.02882 1.03742 1.21693 0.99451 1.00904 0.90549 0.84869 1.21256 0.77016 0.86800 0.84949 1.90702 1.51211 1.17897 1.85428 1.48230 1.61060 1.14594 1.10144 1.22067 0.96697 0.79188 1.03787 1.21789 0.98571 0.99259 0.95168 1.20923 0.95277 0.94818 0.94918 1.22900 0.98059 0.99214 0.95765 1.21747 0.84380 0.97835 0.92987 1.44862 1.04416 1.81301 1.04535 1.19405 0.92492 1.38891 0.85754 0.90376 1.25605 0.96397 1.02704 1.01413 1.70059 1.05728 1.55489 1.28673 0.85160 0.77047 0.78026 0.79151 1.22051 1.20803 1.20051 1.21517 0.94449 0.96474 0.85573 1.21602 0.97495 0.94666 1.00341 1.21420 0.95532 0.96403 0.87061 1.22586 0.96898 0.82955 0.94615 0.93108 1.23057 1.01391 0.99312 0.94545 1.23108 1.00764 0.93353 1.01161 1.23748 1.00157 0.98804 0.82004 1.89110 1.85233 1.30397 1.25401 0.93412 0.88463 0.91657 0.86108 0.91173 0.89855 0.89240 0.91202 0.90608 1.00226 0.91343 0.94472 0.95089 0.96724 0.92982 0.90943 0.90878 0.92341 0.89257 0.88010 0.88514 0.90042 0.92426 0.88973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 8.47 71.98 0.61 -1.35 16 2 C -0.11 -1.80 1.65 -11.54 -0.02 -1.82 16 3 H 0.13 1.41 6.53 -2.39 -0.02 1.40 16 4 C 0.51 13.75 6.79 87.66 0.60 14.35 16 5 O -0.57 -21.05 14.61 16.32 0.24 -20.82 16 6 N -0.61 -15.44 2.96 -818.40 -2.42 -17.86 16 7 C 0.10 2.00 5.48 86.40 0.47 2.47 16 8 C -0.11 -2.38 4.70 30.46 0.14 -2.23 16 9 C -0.06 -1.84 0.53 -51.92 -0.03 -1.87 16 10 C -0.12 -4.33 6.00 31.88 0.19 -4.14 16 11 C 0.16 7.70 5.58 86.96 0.49 8.18 16 12 N -0.63 -32.16 3.40 -692.03 -2.35 -34.51 16 13 C -0.24 -13.36 10.28 84.03 0.86 -12.49 16 14 H 0.08 4.24 7.83 -2.91 -0.02 4.21 16 15 C -0.07 -3.95 5.49 84.86 0.47 -3.49 16 16 N -0.95 -57.30 10.09 21.65 0.22 -57.08 16 17 Si 0.98 46.18 29.55 68.60 2.03 48.21 16 18 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 19 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 20 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 21 C 0.14 5.75 5.43 86.49 0.47 6.22 16 22 C -0.10 -3.24 4.78 30.46 0.15 -3.09 16 23 C 0.12 3.65 6.12 86.40 0.53 4.18 16 24 C 0.09 1.61 2.91 30.96 0.09 1.70 16 25 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 26 C -0.15 -1.41 6.20 31.58 0.20 -1.22 16 27 C -0.15 -1.41 7.15 31.90 0.23 -1.18 16 28 C 0.03 0.47 7.72 72.67 0.56 1.03 16 29 O -0.38 -9.43 8.95 -129.64 -1.16 -10.59 16 30 H 0.05 0.94 7.44 -2.39 -0.02 0.92 16 31 H 0.10 0.79 6.63 -2.39 -0.02 0.77 16 32 H 0.06 0.90 7.34 -2.39 -0.02 0.88 16 33 H 0.12 1.40 5.11 -2.39 -0.01 1.38 16 34 H 0.07 1.44 7.48 -2.38 -0.02 1.42 16 35 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.09 1.80 8.10 -2.38 -0.02 1.78 16 37 H 0.07 2.38 8.01 -2.38 -0.02 2.36 16 38 H 0.08 2.42 8.01 -2.39 -0.02 2.40 16 39 H -0.02 -1.10 7.74 -2.39 -0.02 -1.11 16 40 H 0.07 3.89 5.86 -2.39 -0.01 3.87 16 41 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 42 H 0.03 1.18 7.59 -2.39 -0.02 1.16 16 43 H 0.01 0.61 6.08 -2.39 -0.01 0.60 16 44 H 0.05 1.93 7.47 -2.39 -0.02 1.91 16 45 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 46 H 0.07 2.45 7.02 -2.39 -0.02 2.43 16 47 H 0.06 1.92 6.54 -2.39 -0.02 1.90 16 48 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 49 H 0.10 0.61 6.27 -2.39 -0.01 0.59 16 50 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 51 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 52 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 53 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -76.79 386.66 3.44 -73.36 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 0.89 Total: 14.06 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: 6.00 Total: 5.24 kcal Atomic # 7 Polarization: -104.90 SS G_CDS: -4.56 Total: -109.46 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -0.92 Total: -31.40 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -76.79 3.44 -73.36 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035227859.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.046 kcal (2) G-P(sol) polarization free energy of solvation -76.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds