Wall clock time and date at job start Tue Mar 31 2020 19:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47164 * 240.00295 * 2 1 3 5 5 C 1.50706 * 109.47267 * 65.00123 * 4 2 1 6 6 O 1.21284 * 119.99693 * 359.97438 * 5 4 2 7 7 N 1.34771 * 120.00154 * 180.02562 * 5 4 2 8 8 C 1.46876 * 120.46708 * 359.71617 * 7 5 4 9 9 C 1.52865 * 109.02145 * 235.49376 * 8 7 5 10 10 C 1.52669 * 109.17060 * 307.81815 * 9 8 7 11 11 C 1.53481 * 113.62175 * 188.99502 * 10 9 8 12 12 N 1.47665 * 85.99069 * 137.70581 * 11 10 9 13 13 C 1.36942 * 134.45818 * 155.66147 * 12 11 10 14 14 H 1.08004 * 119.99728 * 180.02562 * 13 12 11 15 15 C 1.38807 * 120.00044 * 0.02614 * 13 12 11 16 16 N 1.31619 * 120.00193 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99890 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47518 * 90.00452 * 17 15 13 19 19 H 1.48502 * 109.47029 * 210.00351 * 17 15 13 20 20 H 1.48503 * 109.47272 * 330.00005 * 17 15 13 21 21 C 1.47664 * 91.08682 * 335.68043 * 12 11 10 22 22 C 1.52675 * 113.19074 * 57.46099 * 10 9 8 23 23 C 1.46890 * 120.46435 * 180.02562 * 7 5 4 24 24 C 1.52997 * 109.47127 * 120.00132 * 2 1 3 25 25 H 1.08999 * 109.82243 * 60.56746 * 24 2 1 26 26 C 1.54378 * 109.83112 * 299.58919 * 24 2 1 27 27 C 1.55309 * 102.25427 * 219.12791 * 26 24 2 28 28 C 1.54945 * 100.93774 * 34.13528 * 27 26 24 29 29 O 1.43238 * 109.83016 * 181.45295 * 24 2 1 30 30 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 32 32 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 33 33 H 1.09000 * 109.47278 * 184.99561 * 4 2 1 34 34 H 1.08994 * 109.47510 * 305.00071 * 4 2 1 35 35 H 1.09001 * 109.58903 * 355.31851 * 8 7 5 36 36 H 1.08997 * 109.58957 * 115.75021 * 8 7 5 37 37 H 1.08994 * 109.60908 * 187.84441 * 9 8 7 38 38 H 1.09000 * 109.44734 * 67.69525 * 9 8 7 39 39 H 1.09006 * 113.79254 * 251.97403 * 11 10 9 40 40 H 1.09005 * 113.79007 * 23.43783 * 11 10 9 41 41 H 0.96994 * 120.00277 * 179.97438 * 16 15 13 42 42 H 1.08996 * 113.79352 * 270.05229 * 21 12 11 43 43 H 1.09004 * 113.89777 * 138.59063 * 21 12 11 44 44 H 1.08999 * 109.53479 * 182.51565 * 22 10 9 45 45 H 1.09000 * 109.58576 * 62.32880 * 22 10 9 46 46 H 1.09001 * 109.58347 * 244.25056 * 23 7 5 47 47 H 1.08999 * 109.58595 * 4.53775 * 23 7 5 48 48 H 1.09002 * 110.84942 * 337.32136 * 26 24 2 49 49 H 1.09006 * 110.84627 * 100.93880 * 26 24 2 50 50 H 1.08993 * 111.12453 * 276.21838 * 27 26 24 51 51 H 1.08999 * 111.12658 * 152.05339 * 27 26 24 52 52 H 1.08999 * 110.30963 * 204.64000 * 28 27 26 53 53 H 1.08999 * 110.31371 * 82.47009 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6414 0.0572 -2.4766 6 8 1.0110 1.0871 -2.3632 7 7 1.9845 -0.3917 -3.7002 8 6 2.7523 -1.6349 -3.8491 9 6 4.0179 -1.3453 -4.6559 10 6 3.6351 -0.6322 -5.9504 11 6 4.7995 -0.4861 -6.9396 12 7 3.8230 -0.8566 -7.9835 13 6 3.7323 -0.6393 -9.3325 14 1 2.8905 -1.0277 -9.8866 15 6 4.7222 0.0802 -9.9877 16 7 5.7482 0.5531 -9.3125 17 14 4.5980 0.3773 -11.8277 18 1 3.8612 1.6423 -12.0763 19 1 5.9621 0.4771 -12.4061 20 1 3.8722 -0.7515 -12.4635 21 6 2.9833 -1.5550 -6.9897 22 6 2.8644 0.6649 -5.7169 23 6 1.6018 0.3592 -4.9033 24 6 2.0401 -0.7213 1.2492 25 1 1.6882 -1.7529 1.2499 26 6 1.5386 0.0060 2.5153 27 6 2.7718 -0.0804 3.4553 28 6 3.9300 0.0217 2.4311 29 8 3.4720 -0.6962 1.2742 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 3.1264 -0.7993 -1.2057 34 1 1.6055 -1.7197 -1.2953 35 1 3.0271 -2.0148 -2.8651 36 1 2.1495 -2.3760 -4.3739 37 1 4.5238 -2.2816 -4.8915 38 1 4.6828 -0.7088 -4.0720 39 1 5.1743 0.5335 -7.0301 40 1 5.5917 -1.2212 -6.7978 41 1 6.4401 1.0555 -9.7704 42 1 3.2357 -2.6077 -6.8628 43 1 1.9141 -1.3862 -7.1185 44 1 2.5836 1.0997 -6.6762 45 1 3.4904 1.3680 -5.1674 46 1 0.9160 -0.2383 -5.5040 47 1 1.1168 1.2913 -4.6134 48 1 1.2914 1.0443 2.2940 49 1 0.6837 -0.5137 2.9481 50 1 2.7973 -1.0336 3.9833 51 1 2.7916 0.7549 4.1552 52 1 4.8313 -0.4421 2.8317 53 1 4.1206 1.0646 2.1782 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035844187.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:38 Heat of formation + Delta-G solvation = -58.251131 kcal Electronic energy + Delta-G solvation = -30367.091509 eV Core-core repulsion = 26432.059343 eV Total energy + Delta-G solvation = -3935.032166 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.64987 -40.68791 -39.92733 -37.13331 -35.66561 -34.41299 -33.02465 -32.36160 -32.02602 -29.62740 -28.72933 -28.15359 -26.72094 -25.10763 -24.62395 -23.80076 -22.91180 -22.43311 -21.20362 -20.29647 -18.86965 -18.69770 -17.97045 -17.69769 -16.99368 -16.83206 -16.60999 -16.47433 -16.09897 -15.69006 -15.56390 -15.10919 -14.98244 -14.60245 -14.59320 -14.32777 -14.02548 -13.79222 -13.68298 -13.55384 -13.33961 -13.11516 -12.95207 -12.82310 -12.72849 -12.67981 -12.63463 -12.19668 -12.18264 -12.13466 -12.07746 -11.76187 -11.65784 -11.64044 -11.58366 -11.48375 -11.14447 -10.99925 -10.81416 -10.61093 -10.30999 -9.53567 -8.87304 -7.88870 -5.20996 1.43454 1.45450 1.53692 1.70659 2.09252 2.47736 2.96225 3.31747 3.42674 3.51432 3.63757 3.65687 3.82198 3.96673 3.99773 4.04786 4.14827 4.16605 4.23479 4.31316 4.34140 4.44864 4.45122 4.56569 4.65766 4.69655 4.72211 4.76704 4.77012 4.83613 4.85958 4.90018 4.92047 4.95642 4.97042 4.99164 5.05477 5.08424 5.14281 5.19157 5.21876 5.28469 5.29723 5.36065 5.43767 5.49225 5.59270 5.61484 5.77395 5.97352 6.17796 6.52885 6.94260 7.26095 7.63467 8.60822 9.27986 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.027450 B = 0.002214 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.806222 B =12641.968030 C =13048.376535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.080 4.080 3 H 0.053 0.947 4 C -0.125 4.125 5 C 0.510 3.490 6 O -0.583 6.583 7 N -0.608 5.608 8 C 0.112 3.888 9 C -0.114 4.114 10 C -0.082 4.082 11 C 0.168 3.832 12 N -0.641 5.641 13 C -0.228 4.228 14 H 0.082 0.918 15 C -0.071 4.071 16 N -0.955 5.955 17 Si 0.975 3.025 18 H -0.287 1.287 19 H -0.296 1.296 20 H -0.268 1.268 21 C 0.131 3.869 22 C -0.088 4.088 23 C 0.125 3.875 24 C 0.085 3.915 25 H 0.094 0.906 26 C -0.149 4.149 27 C -0.151 4.151 28 C 0.040 3.960 29 O -0.399 6.399 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.104 0.896 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.064 0.936 39 H 0.031 0.969 40 H 0.017 0.983 41 H 0.246 0.754 42 H 0.052 0.948 43 H 0.049 0.951 44 H 0.052 0.948 45 H 0.050 0.950 46 H 0.074 0.926 47 H 0.076 0.924 48 H 0.072 0.928 49 H 0.098 0.902 50 H 0.087 0.913 51 H 0.093 0.907 52 H 0.093 0.907 53 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.793 -6.448 27.952 30.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.099 4.099 3 H 0.071 0.929 4 C -0.165 4.165 5 C 0.300 3.700 6 O -0.464 6.464 7 N -0.340 5.340 8 C -0.009 4.009 9 C -0.153 4.153 10 C -0.083 4.083 11 C 0.042 3.958 12 N -0.367 5.367 13 C -0.357 4.357 14 H 0.099 0.901 15 C -0.264 4.264 16 N -0.605 5.605 17 Si 0.804 3.196 18 H -0.215 1.215 19 H -0.222 1.222 20 H -0.193 1.193 21 C 0.006 3.994 22 C -0.127 4.127 23 C 0.002 3.998 24 C 0.027 3.973 25 H 0.112 0.888 26 C -0.187 4.187 27 C -0.189 4.189 28 C -0.036 4.036 29 O -0.319 6.319 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.122 0.878 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.103 0.897 37 H 0.108 0.892 38 H 0.083 0.917 39 H 0.049 0.951 40 H 0.034 0.966 41 H 0.055 0.945 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.069 0.931 46 H 0.092 0.908 47 H 0.094 0.906 48 H 0.091 0.909 49 H 0.117 0.883 50 H 0.105 0.895 51 H 0.112 0.888 52 H 0.112 0.888 53 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.919 -5.917 27.536 29.543 hybrid contribution 0.525 0.787 -1.673 1.922 sum -8.394 -5.131 25.862 27.670 Atomic orbital electron populations 1.21856 0.93712 1.02370 1.02436 1.21212 0.96664 0.98842 0.93196 0.92859 1.21725 1.03833 1.00435 0.90492 1.21312 0.78220 0.85210 0.85208 1.90621 1.42421 1.26573 1.86740 1.48235 1.54772 1.25498 1.05491 1.21848 0.91743 0.84917 1.02441 1.21717 0.97901 1.01158 0.94484 1.22090 0.96645 0.95676 0.93859 1.22172 0.91359 0.97369 0.84870 1.46345 1.24782 1.62162 1.03389 1.19403 1.05234 1.27585 0.83447 0.90060 1.25597 0.96985 1.01505 1.02303 1.70018 1.12590 1.42093 1.35754 0.85118 0.76366 0.78081 0.80029 1.21462 1.22222 1.19299 1.22766 0.95102 0.94997 0.86520 1.21326 0.96306 0.96079 0.98969 1.21387 0.95827 0.97121 0.85493 1.22880 0.80461 0.99887 0.94030 0.88782 1.23198 0.99412 1.01647 0.94427 1.23270 0.93493 1.04103 0.98009 1.23526 0.98372 0.96471 0.85237 1.88403 1.21027 1.76030 1.46421 0.91486 0.91755 0.93050 0.87820 0.86487 0.86718 0.89684 0.89232 0.91740 0.95055 0.96564 0.94489 0.93079 0.93230 0.92911 0.93116 0.90776 0.90552 0.90891 0.88330 0.89452 0.88829 0.88840 0.92923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 8.70 71.98 0.63 -1.89 16 2 C -0.08 -1.45 1.68 -10.79 -0.02 -1.47 16 3 H 0.05 1.26 7.96 -2.39 -0.02 1.24 16 4 C -0.13 -2.29 3.45 29.85 0.10 -2.19 16 5 C 0.51 13.28 7.41 87.66 0.65 13.93 16 6 O -0.58 -19.39 13.35 -3.04 -0.04 -19.44 16 7 N -0.61 -15.42 2.95 -819.56 -2.42 -17.84 16 8 C 0.11 2.23 6.19 86.26 0.53 2.77 16 9 C -0.11 -2.94 5.24 30.44 0.16 -2.78 16 10 C -0.08 -2.89 0.77 -52.03 -0.04 -2.93 16 11 C 0.17 8.03 6.64 86.31 0.57 8.61 16 12 N -0.64 -32.94 3.53 -722.64 -2.55 -35.49 16 13 C -0.23 -12.99 10.70 84.03 0.90 -12.09 16 14 H 0.08 4.43 7.83 -2.91 -0.02 4.40 16 15 C -0.07 -4.16 5.50 84.86 0.47 -3.70 16 16 N -0.95 -59.18 11.39 21.65 0.25 -58.93 16 17 Si 0.98 46.86 29.55 68.60 2.03 48.89 16 18 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 19 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 20 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 21 C 0.13 5.02 7.73 86.32 0.67 5.69 16 22 C -0.09 -3.16 5.21 30.58 0.16 -3.01 16 23 C 0.12 3.73 6.30 86.40 0.54 4.27 16 24 C 0.08 1.20 3.08 31.06 0.10 1.30 16 25 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 26 C -0.15 -1.59 5.46 31.86 0.17 -1.42 16 27 C -0.15 -1.38 7.16 32.05 0.23 -1.15 16 28 C 0.04 0.54 7.78 72.65 0.56 1.10 16 29 O -0.40 -7.18 10.34 -148.98 -1.54 -8.72 16 30 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.06 0.93 7.06 -2.39 -0.02 0.92 16 32 H 0.05 1.22 5.95 -2.39 -0.01 1.20 16 33 H 0.10 1.89 7.16 -2.39 -0.02 1.87 16 34 H 0.12 1.52 7.91 -2.39 -0.02 1.50 16 35 H 0.11 1.59 5.89 -2.39 -0.01 1.57 16 36 H 0.08 1.51 8.07 -2.39 -0.02 1.49 16 37 H 0.09 2.12 8.12 -2.39 -0.02 2.10 16 38 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.03 1.73 7.12 -2.38 -0.02 1.71 16 40 H 0.02 0.81 8.09 -2.38 -0.02 0.79 16 41 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 42 H 0.05 1.80 8.07 -2.39 -0.02 1.79 16 43 H 0.05 1.82 7.41 -2.38 -0.02 1.80 16 44 H 0.05 2.22 8.01 -2.39 -0.02 2.20 16 45 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 46 H 0.07 2.10 7.49 -2.39 -0.02 2.08 16 47 H 0.08 2.47 6.97 -2.39 -0.02 2.45 16 48 H 0.07 0.89 7.57 -2.39 -0.02 0.87 16 49 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 50 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 51 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 52 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 53 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -74.15 399.71 2.98 -71.17 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 0.87 Total: 15.31 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: 6.39 Total: 5.04 kcal Atomic # 7 Polarization: -107.53 SS G_CDS: -4.72 Total: -112.26 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -1.58 Total: -28.16 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -74.15 2.98 -71.17 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035844187.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.922 kcal (2) G-P(sol) polarization free energy of solvation -74.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds