Wall clock time and date at job start Tue Mar 31 2020 19:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46664 * 2 1 4 4 C 1.52996 * 109.46890 * 239.99955 * 2 1 3 5 5 C 1.50692 * 109.47511 * 64.99792 * 4 2 1 6 6 O 1.21284 * 120.00115 * 359.97438 * 5 4 2 7 7 N 1.34778 * 120.00534 * 180.02562 * 5 4 2 8 8 C 1.46885 * 120.46397 * 359.71839 * 7 5 4 9 9 C 1.52858 * 109.01854 * 235.49463 * 8 7 5 10 10 C 1.52671 * 109.17455 * 307.81335 * 9 8 7 11 11 C 1.53486 * 113.62139 * 188.98884 * 10 9 8 12 12 N 1.47667 * 85.98556 * 137.71387 * 11 10 9 13 13 C 1.36938 * 134.46106 * 155.65983 * 12 11 10 14 14 H 1.07992 * 120.00233 * 180.02562 * 13 12 11 15 15 C 1.38814 * 119.99396 * 0.03366 * 13 12 11 16 16 N 1.31616 * 120.00312 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99775 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47256 * 59.99841 * 17 15 13 19 19 H 1.48506 * 109.47174 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47175 * 299.99816 * 17 15 13 21 21 C 1.47663 * 91.08851 * 335.68353 * 12 11 10 22 22 C 1.52671 * 113.18188 * 57.46663 * 10 9 8 23 23 C 1.46881 * 120.46840 * 180.02562 * 7 5 4 24 24 C 1.52995 * 109.47082 * 119.99965 * 2 1 3 25 25 H 1.09003 * 110.41647 * 177.69372 * 24 2 1 26 26 C 1.54478 * 110.37213 * 299.99744 * 24 2 1 27 27 C 1.54510 * 104.06500 * 142.81344 * 26 24 2 28 28 C 1.54477 * 104.18108 * 359.93120 * 27 26 24 29 29 O 1.44415 * 110.37805 * 55.38068 * 24 2 1 30 30 H 1.09003 * 109.47067 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47188 * 299.99836 * 1 2 3 32 32 H 1.08998 * 109.47107 * 60.00246 * 1 2 3 33 33 H 1.08998 * 109.47158 * 185.00086 * 4 2 1 34 34 H 1.08998 * 109.47117 * 304.99609 * 4 2 1 35 35 H 1.09007 * 109.58666 * 355.31701 * 8 7 5 36 36 H 1.09000 * 109.58931 * 115.75061 * 8 7 5 37 37 H 1.09006 * 109.60364 * 187.84003 * 9 8 7 38 38 H 1.08997 * 109.44943 * 67.70136 * 9 8 7 39 39 H 1.08995 * 113.79225 * 251.97869 * 11 10 9 40 40 H 1.09001 * 113.78442 * 23.45039 * 11 10 9 41 41 H 0.97001 * 120.00262 * 180.02562 * 16 15 13 42 42 H 1.09004 * 113.79243 * 270.05258 * 21 12 11 43 43 H 1.09002 * 113.89972 * 138.59025 * 21 12 11 44 44 H 1.09001 * 109.53033 * 182.51543 * 22 10 9 45 45 H 1.09000 * 109.53482 * 62.29617 * 22 10 9 46 46 H 1.09004 * 109.58474 * 244.25283 * 23 7 5 47 47 H 1.09002 * 109.59187 * 4.53505 * 23 7 5 48 48 H 1.09000 * 110.51268 * 24.16771 * 26 24 2 49 49 H 1.08999 * 110.51553 * 261.45690 * 26 24 2 50 50 H 1.09002 * 110.51305 * 118.64650 * 27 26 24 51 51 H 1.08994 * 110.51141 * 241.21979 * 27 26 24 52 52 H 1.09006 * 110.37498 * 94.92285 * 28 27 26 53 53 H 1.09000 * 110.37254 * 217.25804 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0569 -2.4765 6 8 1.0109 1.0868 -2.3634 7 7 1.9844 -0.3921 -3.7002 8 6 2.7521 -1.6354 -3.8490 9 6 4.0177 -1.3458 -4.6558 10 6 3.6349 -0.6329 -5.9505 11 6 4.7994 -0.4868 -6.9396 12 7 3.8229 -0.8573 -7.9835 13 6 3.7321 -0.6400 -9.3325 14 1 2.8904 -1.0284 -9.8866 15 6 4.7221 0.0794 -9.9877 16 7 5.7477 0.5530 -9.3123 17 14 4.5987 0.3752 -11.8279 18 1 3.3526 1.1260 -12.1262 19 1 5.7721 1.1640 -12.2823 20 1 4.5730 -0.9286 -12.5383 21 6 2.9831 -1.5556 -6.9898 22 6 2.8643 0.6642 -5.7170 23 6 1.6016 0.3586 -4.9033 24 6 2.0400 -0.7212 1.2492 25 1 3.1291 -0.7660 1.2445 26 6 1.5367 -0.0092 2.5244 27 6 1.2437 -1.1639 3.5083 28 6 1.6022 -2.4389 2.7132 29 8 1.4825 -2.0513 1.3248 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 3.1263 -0.7995 -1.2056 34 1 1.6054 -1.7198 -1.2951 35 1 3.0270 -2.0151 -2.8649 36 1 2.1492 -2.3766 -4.3737 37 1 4.5235 -2.2822 -4.8913 38 1 4.6826 -0.7093 -4.0721 39 1 5.1741 0.5327 -7.0301 40 1 5.5915 -1.2219 -6.7977 41 1 6.4393 1.0561 -9.7701 42 1 3.2356 -2.6084 -6.8628 43 1 1.9139 -1.3869 -7.1185 44 1 2.5834 1.0989 -6.6763 45 1 3.4908 1.3664 -5.1670 46 1 0.9157 -0.2389 -5.5039 47 1 1.1165 1.2907 -4.6136 48 1 0.6271 0.5533 2.3139 49 1 2.3088 0.6474 2.9253 50 1 1.8710 -1.0781 4.3956 51 1 0.1898 -1.1708 3.7861 52 1 2.6238 -2.7487 2.9333 53 1 0.9027 -3.2414 2.9473 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035844195.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:51 Heat of formation + Delta-G solvation = -54.559705 kcal Electronic energy + Delta-G solvation = -30311.750934 eV Core-core repulsion = 26376.878841 eV Total energy + Delta-G solvation = -3934.872093 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.64110 -40.65888 -39.90462 -37.11998 -35.56802 -34.40623 -32.92558 -32.35937 -32.01859 -29.58829 -28.68663 -28.18375 -26.71834 -25.21964 -24.75328 -23.96146 -22.90980 -22.21284 -21.07122 -20.24074 -18.84630 -18.69197 -17.98594 -17.21139 -16.96961 -16.80599 -16.61649 -16.44285 -16.09394 -16.00441 -15.61106 -15.09983 -15.05911 -14.72493 -14.53569 -14.38402 -14.03694 -14.00130 -13.68286 -13.59211 -13.14444 -13.09389 -12.89959 -12.79422 -12.61912 -12.60408 -12.43230 -12.28586 -12.22679 -12.11493 -12.06332 -11.71952 -11.66340 -11.64720 -11.49607 -11.25778 -11.13416 -10.99277 -10.79661 -10.60927 -10.51367 -9.52872 -8.86641 -7.88347 -5.20282 1.43728 1.46879 1.52851 1.71660 2.09122 2.48254 3.03648 3.31989 3.43587 3.51142 3.64397 3.76406 3.81249 3.98674 4.01212 4.09030 4.11306 4.14473 4.21591 4.32346 4.40213 4.45586 4.45888 4.54632 4.64861 4.71767 4.74507 4.76502 4.80035 4.82502 4.85455 4.91887 4.92299 4.96534 5.01034 5.02522 5.06614 5.07356 5.16227 5.21168 5.22806 5.28405 5.30487 5.36859 5.40567 5.51871 5.60345 5.62436 5.78603 5.98208 6.02161 6.53560 6.94963 7.26598 7.63973 8.61415 9.28203 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.033569 B = 0.002117 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.908049 B =13220.007302 C =13503.359662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.066 4.066 3 H 0.079 0.921 4 C -0.126 4.126 5 C 0.510 3.490 6 O -0.581 6.581 7 N -0.607 5.607 8 C 0.112 3.888 9 C -0.113 4.113 10 C -0.081 4.081 11 C 0.168 3.832 12 N -0.640 5.640 13 C -0.230 4.230 14 H 0.080 0.920 15 C -0.070 4.070 16 N -0.954 5.954 17 Si 0.975 3.025 18 H -0.278 1.278 19 H -0.295 1.295 20 H -0.278 1.278 21 C 0.129 3.871 22 C -0.088 4.088 23 C 0.124 3.876 24 C 0.081 3.919 25 H 0.080 0.920 26 C -0.158 4.158 27 C -0.152 4.152 28 C 0.038 3.962 29 O -0.387 6.387 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.049 0.951 33 H 0.113 0.887 34 H 0.109 0.891 35 H 0.116 0.884 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.069 0.931 39 H 0.032 0.968 40 H 0.017 0.983 41 H 0.247 0.753 42 H 0.050 0.950 43 H 0.048 0.952 44 H 0.051 0.949 45 H 0.054 0.946 46 H 0.071 0.929 47 H 0.077 0.923 48 H 0.075 0.925 49 H 0.086 0.914 50 H 0.089 0.911 51 H 0.073 0.927 52 H 0.068 0.932 53 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.579 -6.647 27.862 29.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.085 4.085 3 H 0.097 0.903 4 C -0.165 4.165 5 C 0.301 3.699 6 O -0.462 6.462 7 N -0.340 5.340 8 C -0.010 4.010 9 C -0.152 4.152 10 C -0.083 4.083 11 C 0.043 3.957 12 N -0.367 5.367 13 C -0.358 4.358 14 H 0.098 0.902 15 C -0.263 4.263 16 N -0.603 5.603 17 Si 0.804 3.196 18 H -0.204 1.204 19 H -0.222 1.222 20 H -0.204 1.204 21 C 0.005 3.995 22 C -0.126 4.126 23 C 0.001 3.999 24 C 0.023 3.977 25 H 0.098 0.902 26 C -0.195 4.195 27 C -0.190 4.190 28 C -0.038 4.038 29 O -0.307 6.307 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.131 0.869 34 H 0.128 0.872 35 H 0.134 0.866 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.088 0.912 39 H 0.051 0.949 40 H 0.035 0.965 41 H 0.055 0.945 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.073 0.927 46 H 0.089 0.911 47 H 0.096 0.904 48 H 0.094 0.906 49 H 0.104 0.896 50 H 0.107 0.893 51 H 0.092 0.908 52 H 0.086 0.914 53 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.923 -6.138 27.427 29.201 hybrid contribution 0.487 0.561 -1.582 1.748 sum -7.436 -5.577 25.845 27.466 Atomic orbital electron populations 1.21818 0.94924 1.01540 1.01682 1.20905 0.96812 0.98757 0.92015 0.90266 1.21733 1.03918 1.00387 0.90460 1.21279 0.78311 0.85153 0.85186 1.90628 1.42244 1.26600 1.86723 1.48225 1.54811 1.25455 1.05489 1.21846 0.91790 0.84871 1.02481 1.21719 0.97804 1.01204 0.94441 1.22094 0.96610 0.95665 0.93891 1.22177 0.91320 0.97434 0.84786 1.46337 1.24811 1.62161 1.03360 1.19356 1.05270 1.27726 0.83495 0.90198 1.25585 0.96988 1.01462 1.02253 1.70004 1.12579 1.41968 1.35782 0.85200 0.76676 0.77695 0.80071 1.20399 1.22172 1.20370 1.22770 0.95051 0.95013 0.86710 1.21324 0.96238 0.96093 0.98949 1.21385 0.95886 0.97099 0.85496 1.23062 0.97559 0.82578 0.94477 0.90211 1.23096 1.02713 0.98815 0.94892 1.22920 1.02903 0.94118 0.99033 1.23581 1.01873 0.97620 0.80733 1.89134 1.82917 1.31506 1.27150 0.92776 0.92281 0.93239 0.86916 0.87246 0.86590 0.90135 0.89299 0.91238 0.94920 0.96529 0.94458 0.93200 0.93425 0.92998 0.92749 0.91116 0.90450 0.90631 0.89552 0.89273 0.90793 0.91375 0.88531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 8.51 71.98 0.61 -2.29 16 2 C -0.07 -1.18 1.96 -10.79 -0.02 -1.20 16 3 H 0.08 1.57 7.96 -2.39 -0.02 1.55 16 4 C -0.13 -2.20 3.36 29.84 0.10 -2.10 16 5 C 0.51 12.93 7.41 87.65 0.65 13.58 16 6 O -0.58 -18.93 13.35 -3.04 -0.04 -18.97 16 7 N -0.61 -15.12 2.95 -819.55 -2.42 -17.53 16 8 C 0.11 2.18 6.19 86.26 0.53 2.71 16 9 C -0.11 -2.79 5.24 30.44 0.16 -2.63 16 10 C -0.08 -2.83 0.77 -52.03 -0.04 -2.87 16 11 C 0.17 7.94 6.64 86.31 0.57 8.51 16 12 N -0.64 -32.76 3.53 -722.71 -2.55 -35.32 16 13 C -0.23 -13.06 10.70 84.03 0.90 -12.16 16 14 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 15 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 16 N -0.95 -58.64 11.39 21.65 0.25 -58.39 16 17 Si 0.98 46.67 29.55 68.60 2.03 48.70 16 18 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 19 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 21 C 0.13 4.96 7.73 86.32 0.67 5.62 16 22 C -0.09 -3.07 5.21 30.59 0.16 -2.91 16 23 C 0.12 3.68 6.30 86.41 0.54 4.22 16 24 C 0.08 1.13 3.00 31.10 0.09 1.22 16 25 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 26 C -0.16 -1.82 6.46 31.61 0.20 -1.61 16 27 C -0.15 -1.39 7.08 31.61 0.22 -1.17 16 28 C 0.04 0.41 7.65 72.48 0.55 0.96 16 29 O -0.39 -6.22 10.21 -148.98 -1.52 -7.75 16 30 H 0.05 1.10 7.61 -2.39 -0.02 1.08 16 31 H 0.06 1.07 6.11 -2.39 -0.01 1.05 16 32 H 0.05 1.27 5.95 -2.39 -0.01 1.26 16 33 H 0.11 1.52 7.71 -2.39 -0.02 1.50 16 34 H 0.11 1.74 7.76 -2.39 -0.02 1.72 16 35 H 0.12 1.52 5.89 -2.38 -0.01 1.50 16 36 H 0.08 1.47 8.08 -2.39 -0.02 1.45 16 37 H 0.09 2.02 8.12 -2.38 -0.02 2.01 16 38 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.03 1.77 7.12 -2.39 -0.02 1.76 16 40 H 0.02 0.81 8.09 -2.39 -0.02 0.79 16 41 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 42 H 0.05 1.77 8.07 -2.38 -0.02 1.75 16 43 H 0.05 1.76 7.41 -2.39 -0.02 1.74 16 44 H 0.05 2.16 8.01 -2.39 -0.02 2.14 16 45 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 46 H 0.07 2.02 7.49 -2.38 -0.02 2.01 16 47 H 0.08 2.47 6.97 -2.39 -0.02 2.45 16 48 H 0.08 0.99 5.79 -2.39 -0.01 0.97 16 49 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 50 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 51 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 52 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 53 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -72.76 397.44 3.00 -69.76 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: 0.88 Total: 15.21 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: 6.38 Total: 4.28 kcal Atomic # 7 Polarization: -106.51 SS G_CDS: -4.72 Total: -111.24 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -1.56 Total: -26.71 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -72.76 3.00 -69.76 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035844195.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.202 kcal (2) G-P(sol) polarization free energy of solvation -72.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds