Wall clock time and date at job start Tue Mar 31 2020 19:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47625 * 2 1 4 4 C 1.53003 * 109.47370 * 120.00465 * 2 1 3 5 5 C 1.50705 * 109.46553 * 294.99822 * 4 2 1 6 6 O 1.21272 * 120.00096 * 359.97438 * 5 4 2 7 7 N 1.34782 * 119.99416 * 179.97438 * 5 4 2 8 8 C 1.46893 * 120.45644 * 180.02562 * 7 5 4 9 9 C 1.53358 * 108.73891 * 124.38922 * 8 7 5 10 10 C 1.52554 * 109.12956 * 52.25775 * 9 8 7 11 11 C 1.52957 * 114.06569 * 75.53870 * 10 9 8 12 12 N 1.47157 * 87.85289 * 139.44017 * 11 10 9 13 13 C 1.36945 * 135.99790 * 153.33802 * 12 11 10 14 14 H 1.07997 * 119.99756 * 0.02562 * 13 12 11 15 15 C 1.38805 * 119.99878 * 179.97438 * 13 12 11 16 16 N 1.31624 * 120.00257 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99929 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47174 * 270.00277 * 17 15 13 19 19 H 1.48501 * 109.47062 * 30.00228 * 17 15 13 20 20 H 1.48499 * 109.46981 * 150.00382 * 17 15 13 21 21 C 1.47160 * 88.00302 * 333.59473 * 12 11 10 22 22 C 1.52553 * 113.43194 * 302.66591 * 10 9 8 23 23 C 1.46882 * 120.46584 * 0.02562 * 7 5 4 24 24 C 1.53006 * 109.47094 * 240.00219 * 2 1 3 25 25 H 1.08992 * 109.86755 * 299.29997 * 24 2 1 26 26 C 1.54101 * 109.87697 * 60.30765 * 24 2 1 27 27 C 1.54805 * 104.18836 * 121.45504 * 26 24 2 28 28 C 1.54997 * 102.09435 * 20.88027 * 27 26 24 29 29 O 1.43743 * 109.87889 * 178.29000 * 24 2 1 30 30 H 1.09002 * 109.46743 * 300.00075 * 1 2 3 31 31 H 1.09001 * 109.46780 * 59.99423 * 1 2 3 32 32 H 1.09001 * 109.46964 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46876 * 175.00071 * 4 2 1 34 34 H 1.08998 * 109.46977 * 54.99433 * 4 2 1 35 35 H 1.08993 * 109.59570 * 4.60993 * 8 7 5 36 36 H 1.09000 * 109.71377 * 244.23244 * 8 7 5 37 37 H 1.08995 * 109.52630 * 292.35833 * 9 8 7 38 38 H 1.09004 * 109.58293 * 172.18656 * 9 8 7 39 39 H 1.09005 * 113.48544 * 24.69765 * 11 10 9 40 40 H 1.08994 * 113.54680 * 254.20336 * 11 10 9 41 41 H 0.97001 * 119.99885 * 179.97438 * 16 15 13 42 42 H 1.08998 * 113.49089 * 141.15847 * 21 12 11 43 43 H 1.08997 * 113.48905 * 271.66379 * 21 12 11 44 44 H 1.08997 * 109.52904 * 177.21591 * 22 10 9 45 45 H 1.09006 * 109.53128 * 297.43141 * 22 10 9 46 46 H 1.09006 * 109.59005 * 355.38320 * 23 7 5 47 47 H 1.08991 * 109.59376 * 115.67663 * 23 7 5 48 48 H 1.09001 * 110.48417 * 240.12930 * 26 24 2 49 49 H 1.09001 * 110.48875 * 2.77325 * 26 24 2 50 50 H 1.09001 * 110.90920 * 139.07778 * 27 26 24 51 51 H 1.08997 * 110.90935 * 262.64923 * 27 26 24 52 52 H 1.08998 * 110.62190 * 81.47616 * 28 27 26 53 53 H 1.08998 * 110.62028 * 204.31752 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6414 0.0570 2.4766 6 8 1.0118 1.0873 2.3632 7 7 1.9845 -0.3921 3.7001 8 6 1.6008 0.3582 4.9033 9 6 0.8163 -0.5733 5.8354 10 6 1.6233 -1.8477 6.0635 11 6 2.8028 -1.6759 7.0221 12 7 2.4569 -2.9866 7.5946 13 6 3.1311 -3.9880 8.2413 14 1 4.1901 -3.8915 8.4301 15 6 2.4532 -5.1263 8.6550 16 7 1.1625 -5.2437 8.4254 17 14 3.3730 -6.4926 9.5365 18 1 3.8900 -7.4644 8.5398 19 1 4.5085 -5.9134 10.2984 20 1 2.4515 -7.1860 10.4721 21 6 1.0701 -2.7523 7.1617 22 6 1.9718 -2.5841 4.7738 23 6 2.7475 -1.6384 3.8491 24 6 2.0400 -0.7212 -1.2493 25 1 1.6905 -1.7536 -1.2496 26 6 1.5378 0.0024 -2.5138 27 6 2.8326 0.3897 -3.2688 28 6 3.8664 -0.5964 -2.6676 29 8 3.4768 -0.6915 -1.2785 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1263 -0.7995 1.2054 34 1 1.6054 -1.7199 1.2951 35 1 0.9752 1.2052 4.6219 36 1 2.4946 0.7174 5.4133 37 1 -0.1406 -0.8249 5.3781 38 1 0.6444 -0.0752 6.7896 39 1 2.6772 -0.8494 7.7216 40 1 3.7714 -1.6618 6.5225 41 1 0.6888 -6.0394 8.7142 42 1 0.5775 -3.6461 6.7790 43 1 0.4685 -2.2216 7.8996 44 1 2.5874 -3.4533 5.0054 45 1 1.0555 -2.9065 4.2791 46 1 2.8770 -2.1064 2.8732 47 1 3.7235 -1.4199 4.2821 48 1 0.9285 -0.6677 -3.1202 49 1 0.9723 0.8943 -2.2437 50 1 2.7203 0.2295 -4.3411 51 1 3.1114 1.4222 -3.0587 52 1 3.7947 -1.5702 -3.1518 53 1 4.8763 -0.1969 -2.7593 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035844198.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:56 Heat of formation + Delta-G solvation = -53.447034 kcal Electronic energy + Delta-G solvation = -30385.426759 eV Core-core repulsion = 26450.602915 eV Total energy + Delta-G solvation = -3934.823844 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.69872 -40.72213 -39.98012 -37.17400 -35.71454 -34.44567 -33.02777 -32.49837 -31.82637 -29.70322 -28.73784 -28.13713 -26.57355 -25.18889 -24.45914 -24.03359 -23.03165 -22.41797 -21.10579 -20.40952 -18.92686 -18.66437 -18.00126 -17.38268 -16.90252 -16.84295 -16.54413 -16.46762 -16.13728 -16.07749 -15.61724 -15.13731 -14.90641 -14.75639 -14.49474 -14.19155 -14.14783 -13.98484 -13.68536 -13.59188 -13.27555 -13.08531 -12.92191 -12.85369 -12.76865 -12.60678 -12.49550 -12.24955 -12.18109 -12.13172 -12.05953 -11.78134 -11.74809 -11.65210 -11.47009 -11.43787 -11.13124 -10.89638 -10.80701 -10.65500 -10.47732 -9.53442 -8.88663 -7.88812 -5.21493 1.45676 1.47545 1.55889 1.69362 2.08579 2.48258 2.97173 3.32767 3.45605 3.50682 3.61834 3.68990 3.82470 3.89265 4.06072 4.07131 4.12369 4.15335 4.18903 4.33279 4.35501 4.39432 4.45687 4.54409 4.63328 4.68875 4.71384 4.74060 4.76840 4.83825 4.86092 4.86863 4.89756 4.90637 4.96977 5.01093 5.02567 5.09343 5.15419 5.18677 5.23385 5.28403 5.28814 5.35940 5.40731 5.45108 5.56416 5.60560 5.76819 5.95391 6.05261 6.49562 6.92811 7.24310 7.62367 8.64647 9.28847 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.018531 B = 0.002380 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.630805 B =11759.464247 C =12572.826859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.066 4.066 3 H 0.063 0.937 4 C -0.130 4.130 5 C 0.514 3.486 6 O -0.577 6.577 7 N -0.608 5.608 8 C 0.120 3.880 9 C -0.104 4.104 10 C -0.086 4.086 11 C 0.129 3.871 12 N -0.638 5.638 13 C -0.223 4.223 14 H 0.084 0.916 15 C -0.069 4.069 16 N -0.954 5.954 17 Si 0.977 3.023 18 H -0.283 1.283 19 H -0.270 1.270 20 H -0.297 1.297 21 C 0.162 3.838 22 C -0.090 4.090 23 C 0.118 3.882 24 C 0.080 3.920 25 H 0.076 0.924 26 C -0.152 4.152 27 C -0.153 4.153 28 C 0.038 3.962 29 O -0.397 6.397 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.061 0.939 38 H 0.078 0.922 39 H 0.039 0.961 40 H 0.051 0.949 41 H 0.247 0.753 42 H 0.034 0.966 43 H 0.009 0.991 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.108 0.892 47 H 0.077 0.923 48 H 0.090 0.910 49 H 0.079 0.921 50 H 0.097 0.903 51 H 0.071 0.929 52 H 0.070 0.930 53 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.219 11.176 -24.338 26.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.085 4.085 3 H 0.082 0.918 4 C -0.169 4.169 5 C 0.304 3.696 6 O -0.457 6.457 7 N -0.340 5.340 8 C -0.003 4.003 9 C -0.143 4.143 10 C -0.087 4.087 11 C 0.004 3.996 12 N -0.363 5.363 13 C -0.351 4.351 14 H 0.102 0.898 15 C -0.262 4.262 16 N -0.603 5.603 17 Si 0.806 3.194 18 H -0.210 1.210 19 H -0.194 1.194 20 H -0.224 1.224 21 C 0.036 3.964 22 C -0.128 4.128 23 C -0.004 4.004 24 C 0.022 3.978 25 H 0.093 0.907 26 C -0.189 4.189 27 C -0.191 4.191 28 C -0.038 4.038 29 O -0.317 6.317 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.097 0.903 39 H 0.057 0.943 40 H 0.069 0.931 41 H 0.056 0.944 42 H 0.052 0.948 43 H 0.026 0.974 44 H 0.080 0.920 45 H 0.081 0.919 46 H 0.126 0.874 47 H 0.095 0.905 48 H 0.108 0.892 49 H 0.098 0.902 50 H 0.115 0.885 51 H 0.090 0.910 52 H 0.088 0.912 53 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.109 11.394 -24.023 26.672 hybrid contribution -0.035 -0.992 1.187 1.547 sum 2.075 10.403 -22.836 25.180 Atomic orbital electron populations 1.21905 0.93725 1.02186 1.02745 1.20962 0.96389 0.99044 0.92115 0.91849 1.21744 1.03886 1.00194 0.91124 1.21128 0.78095 0.85278 0.85102 1.90609 1.41998 1.26421 1.86707 1.48213 1.55016 1.24870 1.05892 1.21514 0.99696 0.94305 0.84781 1.21639 0.98177 0.94606 0.99896 1.21798 0.97023 0.95512 0.94390 1.22540 0.96862 0.87382 0.92779 1.45916 1.06736 1.15716 1.67973 1.19309 0.92433 0.94560 1.28845 0.89800 1.25613 0.96702 1.00888 1.02979 1.70032 1.08551 1.28831 1.52914 0.85093 0.77325 0.79103 0.77911 1.21017 1.19449 1.22388 1.21948 0.87652 0.95053 0.91733 1.21341 1.00384 0.97570 0.93553 1.21808 0.94267 0.83203 1.01172 1.22849 0.80935 0.99130 0.94843 0.90656 1.23050 0.98611 1.01607 0.95678 1.23134 0.94489 1.00091 1.01351 1.23749 0.99623 0.99155 0.81244 1.88898 1.20996 1.95260 1.26536 0.92613 0.91379 0.92144 0.87702 0.87582 0.89661 0.90593 0.91999 0.90307 0.94295 0.93089 0.94434 0.94754 0.97370 0.91957 0.91941 0.87406 0.90511 0.89180 0.90217 0.88485 0.90998 0.91226 0.88411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 8.68 71.98 0.62 -2.15 16 2 C -0.07 -1.27 1.69 -10.79 -0.02 -1.29 16 3 H 0.06 1.47 7.95 -2.39 -0.02 1.45 16 4 C -0.13 -2.61 3.45 29.85 0.10 -2.50 16 5 C 0.51 13.38 7.41 87.66 0.65 14.03 16 6 O -0.58 -18.31 13.36 -3.00 -0.04 -18.35 16 7 N -0.61 -15.46 2.94 -818.53 -2.41 -17.86 16 8 C 0.12 3.12 6.35 86.42 0.55 3.66 16 9 C -0.10 -3.03 5.31 30.57 0.16 -2.87 16 10 C -0.09 -3.02 0.83 -52.61 -0.04 -3.07 16 11 C 0.13 5.04 7.63 83.32 0.64 5.67 16 12 N -0.64 -32.45 3.55 -738.85 -2.63 -35.07 16 13 C -0.22 -12.48 10.74 84.03 0.90 -11.57 16 14 H 0.08 4.47 7.83 -2.91 -0.02 4.45 16 15 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 16 N -0.95 -58.10 11.52 21.65 0.25 -57.85 16 17 Si 0.98 45.80 29.55 68.60 2.03 47.82 16 18 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 19 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 20 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 21 C 0.16 7.69 6.52 83.22 0.54 8.23 16 22 C -0.09 -2.84 5.25 30.56 0.16 -2.68 16 23 C 0.12 2.82 6.24 86.42 0.54 3.35 16 24 C 0.08 1.26 2.97 30.97 0.09 1.36 16 25 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 26 C -0.15 -1.80 6.03 31.58 0.19 -1.61 16 27 C -0.15 -1.59 7.16 31.89 0.23 -1.36 16 28 C 0.04 0.48 7.72 72.67 0.56 1.04 16 29 O -0.40 -7.44 10.54 -148.98 -1.57 -9.01 16 30 H 0.05 1.37 5.95 -2.39 -0.01 1.35 16 31 H 0.07 1.06 6.55 -2.39 -0.02 1.04 16 32 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.10 2.02 7.36 -2.39 -0.02 2.01 16 34 H 0.11 1.84 7.72 -2.39 -0.02 1.82 16 35 H 0.09 2.31 6.97 -2.39 -0.02 2.29 16 36 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.06 1.83 8.14 -2.39 -0.02 1.82 16 38 H 0.08 2.22 8.10 -2.39 -0.02 2.20 16 39 H 0.04 1.48 8.06 -2.38 -0.02 1.46 16 40 H 0.05 1.84 7.54 -2.39 -0.02 1.82 16 41 H 0.25 14.64 8.31 -92.71 -0.77 13.86 16 42 H 0.03 1.85 7.12 -2.39 -0.02 1.83 16 43 H 0.01 0.42 8.09 -2.39 -0.02 0.40 16 44 H 0.06 2.32 7.95 -2.39 -0.02 2.30 16 45 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 46 H 0.11 2.04 5.89 -2.38 -0.01 2.03 16 47 H 0.08 1.79 7.61 -2.39 -0.02 1.77 16 48 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 49 H 0.08 1.00 6.51 -2.39 -0.02 0.98 16 50 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 51 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 52 H 0.07 0.71 8.14 -2.39 -0.02 0.70 16 53 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -70.70 399.19 2.85 -67.85 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 0.87 Total: 17.71 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: 6.35 Total: 4.76 kcal Atomic # 7 Polarization: -106.00 SS G_CDS: -4.78 Total: -110.78 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -1.61 Total: -27.36 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.82 kcal Total: -70.70 2.85 -67.85 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035844198.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.402 kcal (2) G-P(sol) polarization free energy of solvation -70.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds